One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=10; shift=0; ncol=10; ryATGTGCdt
; Alignment reference
a 1622 1218 4687 102 176 159 208 87 1434 1234
c 1071 1533 137 576 73 273 55 5079 1165 1150
g 1414 1214 395 73 5022 108 4977 21 1363 1201
t 1224 1366 112 4580 60 4791 91 144 1369 1746
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| oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ryATGTGCdt
; cor=; Ncor=
a 1622 1218 4687 102 176 159 208 87 1434 1234
c 1071 1533 137 576 73 273 55 5079 1165 1150
g 1414 1214 395 73 5022 108 4977 21 1363 1201
t 1224 1366 112 4580 60 4791 91 144 1369 1746
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; wwGAAAAGAww
; Alignment reference
a 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510
c 1000 626 33 54 69 110 179 120 95 1069 1006
g 1373 1279 5897 132 103 109 108 5368 100 1147 1162
t 1755 1806 300 397 407 506 495 746 172 1948 1674
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwGAAAAGAww
; cor=; Ncor=
a 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510
c 1000 626 33 54 69 110 179 120 95 1069 1006
g 1373 1279 5897 132 103 109 108 5368 100 1147 1162
t 1755 1806 300 397 407 506 495 746 172 1948 1674
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; wwACTAAGAww
; Alignment reference
a 2343 2054 7053 522 264 6759 6637 600 6842 2551 2461
c 1135 1108 161 6557 179 300 92 304 262 1318 1507
g 1471 1388 135 308 153 243 231 6137 175 1319 1224
t 2777 3176 377 339 7130 424 766 685 447 2538 2534
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| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwACTAAGAww
; cor=; Ncor=
a 2343 2054 7053 522 264 6759 6637 600 6842 2551 2461
c 1135 1108 161 6557 179 300 92 304 262 1318 1507
g 1471 1388 135 308 153 243 231 6137 175 1319 1224
t 2777 3176 377 339 7130 424 766 685 447 2538 2534
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; wmATGCTCATtw
; Alignment reference
a 1630 1325 4022 173 271 194 241 170 4388 199 1086 1334
c 935 1371 254 71 214 4243 127 4243 164 180 1000 1048
g 901 979 192 158 4023 120 70 247 66 242 1202 871
t 1378 1169 376 4442 336 287 4406 184 226 4223 1556 1591
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| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wmATGCTCATtw
; cor=; Ncor=
a 1630 1325 4022 173 271 194 241 170 4388 199 1086 1334
c 935 1371 254 71 214 4243 127 4243 164 180 1000 1048
g 901 979 192 158 4023 120 70 247 66 242 1202 871
t 1378 1169 376 4442 336 287 4406 184 226 4223 1556 1591
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wtTTAAGAAGww
; Alignment reference
a 1730 1487 221 298 5169 5716 548 5640 5714 557 1905 2146
c 1214 1224 232 256 421 38 196 188 47 192 1270 1166
g 1196 1148 222 347 307 190 5258 172 187 5147 1373 1237
t 2030 2311 5495 5269 273 226 168 170 222 274 1622 1621
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| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wtTTAAGAAGww
; cor=; Ncor=
a 1730 1487 221 298 5169 5716 548 5640 5714 557 1905 2146
c 1214 1224 232 256 421 38 196 188 47 192 1270 1166
g 1196 1148 222 347 307 190 5258 172 187 5147 1373 1237
t 2030 2311 5495 5269 273 226 168 170 222 274 1622 1621
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; wtATGTAGww
; Alignment reference
a 1449 1012 4118 51 373 18 4017 89 1337 1269
c 871 973 54 478 24 10 254 127 962 910
g 909 931 102 68 3899 15 21 3788 813 896
t 1094 1407 49 3726 27 4280 31 319 1211 1248
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; wtATGTAGww
; cor=; Ncor=
a 1449 1012 4118 51 373 18 4017 89 1337 1269
c 871 973 54 478 24 10 254 127 962 910
g 909 931 102 68 3899 15 21 3788 813 896
t 1094 1407 49 3726 27 4280 31 319 1211 1248
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; asAGAGAGar
; Alignment reference
a 3254 1954 7916 11 7890 19 7997 10 3447 2295
c 1515 2150 354 33 431 11 337 131 1538 1515
g 1957 3079 95 8316 25 8318 34 8234 1953 2927
t 1676 1219 37 42 56 54 34 27 1464 1665
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| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; asAGAGAGar
; cor=; Ncor=
a 3254 1954 7916 11 7890 19 7997 10 3447 2295
c 1515 2150 354 33 431 11 337 131 1538 1515
g 1957 3079 95 8316 25 8318 34 8234 1953 2927
t 1676 1219 37 42 56 54 34 27 1464 1665
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; wwAAACTGTww
; Alignment reference
a 2455 2281 6683 6199 6810 614 446 562 283 3077 2461
c 1169 1058 168 355 199 6562 173 111 127 1042 1485
g 1672 1546 163 201 173 162 115 6769 118 1521 1134
t 2298 2709 580 839 412 256 6860 152 7066 1954 2514
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwAAACTGTww
; cor=; Ncor=
a 2455 2281 6683 6199 6810 614 446 562 283 3077 2461
c 1169 1058 168 355 199 6562 173 111 127 1042 1485
g 1672 1546 163 201 173 162 115 6769 118 1521 1134
t 2298 2709 580 839 412 256 6860 152 7066 1954 2514
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; hwCATGACACwt
; Alignment reference
a 1513 1586 389 4860 160 155 4701 290 4598 230 2320 1301
c 1362 1233 4403 227 129 279 245 4764 138 4587 1115 1145
g 1102 1068 298 137 214 4797 178 186 104 304 575 1312
t 1404 1494 291 157 4878 150 257 141 541 260 1371 1623
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| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; hwCATGACACwt
; cor=; Ncor=
a 1513 1586 389 4860 160 155 4701 290 4598 230 2320 1301
c 1362 1233 4403 227 129 279 245 4764 138 4587 1115 1145
g 1102 1068 298 137 214 4797 178 186 104 304 575 1312
t 1404 1494 291 157 4878 150 257 141 541 260 1371 1623
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; wwAGCTAATww
; Alignment reference
a 2105 1768 6036 373 681 330 6023 5704 290 2389 2096
c 1159 1421 57 251 5390 153 208 347 216 969 1486
g 1455 1138 234 5702 326 97 180 235 175 1318 944
t 2040 2432 432 433 362 6179 348 473 6078 2083 2233
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| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwAGCTAATww
; cor=; Ncor=
a 2105 1768 6036 373 681 330 6023 5704 290 2389 2096
c 1159 1421 57 251 5390 153 208 347 216 969 1486
g 1455 1138 234 5702 326 97 180 235 175 1318 944
t 2040 2432 432 433 362 6179 348 473 6078 2083 2233
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