One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.175405_2026-01-04.175405_YulKOI/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --asAGAGAGar ; Alignment reference a 0 0 3254 1954 7916 11 7890 19 7997 10 3447 2295 c 0 0 1515 2150 354 33 431 11 337 131 1538 1515 g 0 0 1957 3079 95 8316 25 8318 34 8234 1953 2927 t 0 0 1676 1219 37 42 56 54 34 27 1464 1665

MA1731.2_rc_shift3 (ZNF768_rc)
; oligos_6nt_test_vs_ctrl_m2 versus MA1731.2_rc (ZNF768_rc); m=1/3; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.766345; ---CAGAGAgGs ; cor=; Ncor= a 0 0 0 1.0 987.0 1.0 945.0 20.0 917.0 123.0 141.0 43.0 c 0 0 0 973.0 11.0 11.0 43.0 29.0 11.0 179.0 62.0 268.0 g 0 0 0 25.0 1.0 987.0 6.0 950.0 39.0 655.0 768.0 478.0 t 0 0 0 1.0 1.0 1.0 6.0 1.0 34.0 43.0 29.0 211.0

MA0508.4_rc_shift3 (PRDM1_rc)
; oligos_6nt_test_vs_ctrl_m2 versus MA0508.4_rc (PRDM1_rc); m=2/3; ncol2=7; w=0; offset=1; strand=R; shift=3; score=0.516452; ---GAGAAAG-- ; cor=; Ncor= a 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0

MA1982.2_shift0 (ZNF574)
; oligos_6nt_test_vs_ctrl_m2 versus MA1982.2 (ZNF574); m=3/3; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.510873; ksCTAGAGmGGC ; cor=; Ncor= a 97.0 33.0 68.0 43.0 997.0 1.0 983.0 58.0 302.0 19.0 58.0 121.0 c 26.0 409.0 877.0 231.0 1.0 4.0 8.0 12.0 512.0 15.0 118.0 802.0 g 618.0 540.0 54.0 19.0 1.0 994.0 8.0 930.0 129.0 965.0 689.0 12.0 t 260.0 19.0 1.0 707.0 1.0 1.0 1.0 1.0 58.0 1.0 136.0 65.0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift1 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=1; ncol=13; -wmATGCTCATtw ; Alignment reference a 0 1630 1325 4022 173 271 194 241 170 4388 199 1086 1334 c 0 935 1371 254 71 214 4243 127 4243 164 180 1000 1048 g 0 901 979 192 158 4023 120 70 247 66 242 1202 871 t 0 1378 1169 376 4442 336 287 4406 184 226 4223 1556 1591

MA0787.1_shift1 (POU3F2)
; oligos_7nt_test_vs_ctrl_m5 versus MA0787.1 (POU3F2); m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=1; score=0.710208; -wTATGCwAATka ; cor=; Ncor= a 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 c 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 g 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 t 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0

MA0788.1_shift0 (POU3F3)
; oligos_7nt_test_vs_ctrl_m5 versus MA0788.1 (POU3F3); m=2/5; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.668631; wwTATGCwAATtw ; cor=; Ncor= a 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 c 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 g 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 t 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0

MA0786.2_shift1 (POU3F1)
; oligos_7nt_test_vs_ctrl_m5 versus MA0786.2 (POU3F1); m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.597241; -wTATGywAAT-- ; cor=; Ncor= a 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 0 0 c 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 0 0 g 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 0 0 t 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 0 0

MA0789.1_shift2 (POU3F4)
; oligos_7nt_test_vs_ctrl_m5 versus MA0789.1 (POU3F4); m=4/5; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.54222; --TATGCwAAT-- ; cor=; Ncor= a 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 c 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 g 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 t 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0

MA1549.2_rc_shift6 (POU6F1_rc)
; oligos_7nt_test_vs_ctrl_m5 versus MA1549.2_rc (POU6F1_rc); m=5/5; ncol2=7; w=0; offset=5; strand=R; shift=6; score=0.489507; ------CTCATTA ; cor=; Ncor= a 0 0 0 0 0 0 1855.0 411.0 615.0 6413.0 0.0 0.0 6413.0 c 0 0 0 0 0 0 6413.0 0.0 5799.0 298.0 0.0 255.0 10.0 g 0 0 0 0 0 0 851.0 96.0 206.0 0.0 0.0 179.0 273.0 t 0 0 0 0 0 0 314.0 6413.0 67.0 0.0 6413.0 6413.0 164.0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift6 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=10; shift=6; ncol=16; ------ryATGTGCdt ; Alignment reference a 0 0 0 0 0 0 1622 1218 4687 102 176 159 208 87 1434 1234 c 0 0 0 0 0 0 1071 1533 137 576 73 273 55 5079 1165 1150 g 0 0 0 0 0 0 1414 1214 395 73 5022 108 4977 21 1363 1201 t 0 0 0 0 0 0 1224 1366 112 4580 60 4791 91 144 1369 1746

MA2325.1_rc_shift6 (EPAS1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA2325.1_rc (EPAS1_rc); m=1/16; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.67162; ------skACGTGCg- ; cor=; Ncor= a 0 0 0 0 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 c 0 0 0 0 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 g 0 0 0 0 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 t 0 0 0 0 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0

MA1560.2_shift6 (SOHLH2)
; oligos_6nt_test_vs_ctrl_m4 versus MA1560.2 (SOHLH2); m=2/16; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.570062; ------gCACGTGc-- ; cor=; Ncor= a 0 0 0 0 0 0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 0 0 c 0 0 0 0 0 0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 0 0 g 0 0 0 0 0 0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 0 0 t 0 0 0 0 0 0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 0 0

MA1108.3_rc_shift7 (MXI1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1108.3_rc (MXI1_rc); m=3/16; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.554053; -------CATGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 c 0 0 0 0 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 g 0 0 0 0 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 t 0 0 0 0 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0

MA0819.3_shift6 (CLOCK)
; oligos_6nt_test_vs_ctrl_m4 versus MA0819.3 (CLOCK); m=4/16; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.514584; ------aCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 2009.0 146.0 2009.0 0.0 244.0 7.0 5.0 0 0 0 c 0 0 0 0 0 0 584.0 2009.0 3.0 2009.0 11.0 87.0 1.0 0 0 0 g 0 0 0 0 0 0 383.0 0.0 52.0 4.0 2009.0 6.0 2009.0 0 0 0 t 0 0 0 0 0 0 89.0 0.0 0.0 302.0 0.0 2009.0 52.0 0 0 0

MA0692.2_rc_shift5 (TFEB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0692.2_rc (TFEB_rc); m=5/16; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.473218; -----rTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 2826.0 807.0 11.0 8715.0 5.0 1155.0 274.0 3.0 0 0 0 c 0 0 0 0 0 558.0 872.0 8715.0 150.0 8715.0 83.0 62.0 0.0 0 0 0 g 0 0 0 0 0 5889.0 2342.0 10.0 169.0 288.0 8715.0 286.0 8715.0 0 0 0 t 0 0 0 0 0 283.0 8715.0 9.0 454.0 2762.0 0.0 8715.0 17.0 0 0 0

MA1106.2_shift8 (HIF1A)
; oligos_6nt_test_vs_ctrl_m4 versus MA1106.2 (HIF1A); m=6/16; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.472247; --------ACGTGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 976.0 0.0 1.0 2.0 84.0 88.0 0 0 c 0 0 0 0 0 0 0 0 0.0 979.0 0.0 33.0 41.0 837.0 0 0 g 0 0 0 0 0 0 0 0 2.0 0.0 979.0 11.0 844.0 20.0 0 0 t 0 0 0 0 0 0 0 0 2.0 1.0 0.0 934.0 11.0 35.0 0 0

MA0004.1_shift7 (Arnt)
; oligos_6nt_test_vs_ctrl_m4 versus MA0004.1 (Arnt); m=7/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.438619; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0

MA1121.2_rc_shift5 (TEAD2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1121.2_rc (TEAD2_rc); m=8/16; ncol2=7; w=-1; offset=-1; strand=R; shift=5; score=0.433611; -----GGAATGT---- ; cor=; Ncor= a 0 0 0 0 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 0 0 0 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 0 0 0 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 0 0 0 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0

MA0058.4_rc_shift7 (MAX_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0058.4_rc (MAX_rc); m=9/16; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.433436; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.0 6876.0 19.0 229.0 38.0 0.0 0 0 0 c 0 0 0 0 0 0 0 6876.0 20.0 6876.0 7.0 87.0 0.0 0 0 0 g 0 0 0 0 0 0 0 27.0 159.0 39.0 6876.0 0.0 6876.0 0 0 0 t 0 0 0 0 0 0 0 0.0 69.0 329.0 0.0 6876.0 39.0 0 0 0

MA0738.2_shift10 (HIC2)
; oligos_6nt_test_vs_ctrl_m4 versus MA0738.2 (HIC2); m=10/16; ncol2=6; w=0; offset=4; strand=D; shift=10; score=0.431414; ----------rTGCCM ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 c 0 0 0 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 g 0 0 0 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0

MA0825.2_shift7 (MNT)
; oligos_6nt_test_vs_ctrl_m4 versus MA0825.2 (MNT); m=11/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.430336; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 27.0 681.0 0.0 15.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 681.0 0.0 681.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 7.0 681.0 15.0 681.0 0 0 0 t 0 0 0 0 0 0 0 5.0 21.0 16.0 0.0 681.0 25.0 0 0 0

MA0622.2_shift7 (Mlxip)
; oligos_6nt_test_vs_ctrl_m4 versus MA0622.2 (Mlxip); m=12/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.426619; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 999.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 999.0 0.0 999.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 999.0 0.0 999.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 999.0 0.0 0 0 0

MA0727.2_shift0 (NR3C2)
; oligos_6nt_test_vs_ctrl_m4 versus MA0727.2 (NR3C2); m=13/16; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.41847; rGwACAywrTGTwCy- ; cor=; Ncor= a 15033.0 57.0 17523.0 30042.0 0.0 33515.0 7347.0 17996.0 22920.0 401.0 0.0 4.0 13789.0 16.0 560.0 0 c 226.0 8.0 1377.0 15.0 49953.0 28.0 18273.0 4833.0 1933.0 996.0 9.0 23.0 7366.0 42687.0 25680.0 0 g 26931.0 55731.0 6650.0 13.0 5.0 1053.0 3144.0 8538.0 14022.0 22.0 58888.0 3.0 1346.0 9.0 582.0 0 t 535.0 60.0 13654.0 9.0 0.0 221.0 16489.0 11062.0 4023.0 43465.0 0.0 44513.0 18547.0 83.0 16504.0 0

MA0113.4_shift0 (NR3C1)
; oligos_6nt_test_vs_ctrl_m4 versus MA0113.4 (NR3C1); m=14/16; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.414127; rGwACAywrTGTwCy- ; cor=; Ncor= a 8885.0 40.0 8932.0 18207.0 0.0 18421.0 2470.0 7736.0 11413.0 81.0 0.0 8.0 8832.0 33.0 234.0 0 c 107.0 7.0 599.0 8.0 24481.0 18.0 9569.0 3656.0 964.0 565.0 11.0 9.0 3149.0 24380.0 14665.0 0 g 12768.0 27337.0 2854.0 9.0 14.0 698.0 1583.0 5589.0 7861.0 50.0 27160.0 50.0 648.0 5.0 188.0 0 t 225.0 38.0 10448.0 10.0 0.0 71.0 10711.0 5972.0 1822.0 23751.0 5.0 24434.0 10375.0 58.0 9821.0 0

MA2327.1_shift3 (PGR)
; oligos_6nt_test_vs_ctrl_m4 versus MA2327.1 (PGR); m=15/16; ncol2=9; w=-3; offset=-3; strand=D; shift=3; score=0.404481; ---ACAkwmTGT---- ; cor=; Ncor= a 0 0 0 29390.0 299.0 27485.0 5276.0 8275.0 8527.0 328.0 765.0 173.0 0 0 0 0 c 0 0 0 121.0 28612.0 363.0 6470.0 6654.0 9602.0 1695.0 185.0 190.0 0 0 0 0 g 0 0 0 189.0 185.0 1689.0 9598.0 6656.0 6465.0 364.0 28617.0 122.0 0 0 0 0 t 0 0 0 164.0 768.0 327.0 8520.0 8279.0 5270.0 27477.0 297.0 29379.0 0 0 0 0

MA1155.1_rc_shift0 (ZSCAN4_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1155.1_rc (ZSCAN4_rc); m=16/16; ncol2=15; w=-6; offset=-6; strand=R; shift=0; score=0.403908; tTTtCAGkGTGTGCa- ; cor=; Ncor= a 229.0 1.0 6.0 362.0 218.0 1699.0 2.0 8.0 73.0 2.0 0.0 2.0 0.0 0.0 1373.0 0 c 365.0 2.0 0.0 230.0 1873.0 75.0 0.0 320.0 0.0 2.0 0.0 0.0 1.0 1737.0 112.0 0 g 200.0 0.0 279.0 107.0 50.0 11.0 1684.0 374.0 1702.0 0.0 1665.0 0.0 1676.0 2.0 383.0 0 t 1000.0 1269.0 1225.0 1118.0 3.0 8.0 7.0 772.0 3.0 1281.0 0.0 1292.0 0.0 290.0 257.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwGAAAAGAww ; Alignment reference a 0 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510 c 0 1000 626 33 54 69 110 179 120 95 1069 1006 g 0 1373 1279 5897 132 103 109 108 5368 100 1147 1162 t 0 1755 1806 300 397 407 506 495 746 172 1948 1674

MA0029.2_shift2 (Mecom)
; oligos_7nt_test_vs_ctrl_m3 versus MA0029.2 (Mecom); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.660053; --AGAyAAGATA ; cor=; Ncor= a 0 0 20.0 0.0 27.0 1.0 27.0 26.0 0.0 27.0 0.0 24.0 c 0 0 1.0 1.0 0.0 10.0 0.0 0.0 0.0 0.0 3.0 1.0 g 0 0 2.0 25.0 0.0 0.0 0.0 1.0 27.0 0.0 0.0 0.0 t 0 0 4.0 1.0 0.0 16.0 0.0 0.0 0.0 0.0 24.0 2.0

MA1125.2_shift4 (ZNF384)
; oligos_7nt_test_vs_ctrl_m3 versus MA1125.2 (ZNF384); m=2/10; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.563802; ----AAAAAAaa ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0

MA0037.5_rc_shift2 (Gata3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0037.5_rc (Gata3_rc); m=3/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.561037; --AGATAAGa-- ; cor=; Ncor= a 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 c 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 g 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 t 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0

MA1104.3_rc_shift2 (GATA6_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1104.3_rc (GATA6_rc); m=4/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.560641; --AGATAAGA-- ; cor=; Ncor= a 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 c 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 g 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 t 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0

MA1970.2_rc_shift2 (TRPS1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1970.2_rc (TRPS1_rc); m=5/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.559944; --AGATAAGA-- ; cor=; Ncor= a 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 c 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 g 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 t 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0

MA0606.3_shift0 (Nfat5)
; oligos_7nt_test_vs_ctrl_m3 versus MA0606.3 (Nfat5); m=6/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.48958; ATGGAAAA---- ; cor=; Ncor= a 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0

MA0036.4_rc_shift2 (GATA2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0036.4_rc (GATA2_rc); m=7/10; ncol2=7; w=0; offset=1; strand=R; shift=2; score=0.478139; --AGATAAG--- ; cor=; Ncor= a 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 c 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 g 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 t 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0

MA2101.1_shift3 (ZNF677)
; oligos_7nt_test_vs_ctrl_m3 versus MA2101.1 (ZNF677); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.45668; ---ratAAGAAC ; cor=; Ncor= a 0 0 0 515.0 1022.0 254.0 1498.0 1515.0 31.0 1499.0 1339.0 34.0 c 0 0 0 98.0 145.0 373.0 18.0 6.0 10.0 51.0 43.0 1447.0 g 0 0 0 811.0 271.0 125.0 49.0 22.0 1511.0 17.0 65.0 40.0 t 0 0 0 157.0 143.0 829.0 16.0 38.0 29.0 14.0 134.0 60.0

MA0624.3_shift1 (Nfatc1)
; oligos_7nt_test_vs_ctrl_m3 versus MA0624.3 (Nfatc1); m=9/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.437099; -TGGAAA----- ; cor=; Ncor= a 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 0 0 0 c 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 0 0 0 g 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 0 0 0 t 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0 0 0 0

MA0625.3_shift1 (NFATC3)
; oligos_7nt_test_vs_ctrl_m3 versus MA0625.3 (NFATC3); m=10/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.424449; -yGGAAa----- ; cor=; Ncor= a 0 289.0 0.0 0.0 5866.0 5866.0 5866.0 0 0 0 0 0 c 0 2313.0 0.0 0.0 261.0 0.0 1586.0 0 0 0 0 0 g 0 451.0 5866.0 5866.0 825.0 184.0 475.0 0 0 0 0 0 t 0 3553.0 0.0 0.0 8.0 0.0 1089.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 100 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; wwAGCTAATww ; Alignment reference a 2105 1768 6036 373 681 330 6023 5704 290 2389 2096 c 1159 1421 57 251 5390 153 208 347 216 969 1486 g 1455 1138 234 5702 326 97 180 235 175 1318 944 t 2040 2432 432 433 362 6179 348 473 6078 2083 2233

MA1480.2_shift2 (DPRX)
; oligos_6nt_test_vs_ctrl_m5 versus MA1480.2 (DPRX); m=1/99; ncol2=9; w=0; offset=2; strand=D; shift=2; score=0.627569; --aGmTAATCy ; cor=; Ncor= a 0 0 4696.0 936.0 5801.0 0.0 8562.0 8562.0 0.0 1014.0 303.0 c 0 0 1411.0 1011.0 2761.0 0.0 1730.0 0.0 0.0 8562.0 8562.0 g 0 0 1509.0 8562.0 110.0 0.0 1121.0 0.0 198.0 222.0 754.0 t 0 0 945.0 437.0 370.0 8562.0 1071.0 0.0 8562.0 350.0 3231.0

MA0793.2_shift2 (POU6F2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0793.2 (POU6F2); m=2/99; ncol2=9; w=0; offset=2; strand=D; shift=2; score=0.591694; --asCTmATTA ; cor=; Ncor= a 0 0 1848.0 714.0 239.0 75.0 1192.0 3297.0 0.0 0.0 3297.0 c 0 0 321.0 1181.0 3297.0 64.0 2105.0 75.0 4.0 12.0 27.0 g 0 0 582.0 2116.0 219.0 114.0 50.0 0.0 0.0 41.0 22.0 t 0 0 546.0 266.0 257.0 3297.0 81.0 21.0 3297.0 3297.0 53.0

MA1963.2_shift4 (SATB1)
; oligos_6nt_test_vs_ctrl_m5 versus MA1963.2 (SATB1); m=3/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.570398; ----CTAATAA ; cor=; Ncor= a 0 0 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 c 0 0 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 g 0 0 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 t 0 0 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0

MA0726.2_shift4 (VSX2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0726.2 (VSX2); m=4/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.541776; ----yTAATTA ; cor=; Ncor= a 0 0 0 0 427.0 1080.0 13809.0 13809.0 118.0 626.0 13809.0 c 0 0 0 0 9554.0 2725.0 397.0 124.0 186.0 567.0 321.0 g 0 0 0 0 445.0 363.0 343.0 123.0 92.0 447.0 2109.0 t 0 0 0 0 4255.0 13809.0 402.0 63.0 13809.0 13809.0 1014.0

MA0725.2_shift4 (VSX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0725.2 (VSX1); m=5/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.539648; ----yTAATTA ; cor=; Ncor= a 0 0 0 0 756.0 1836.0 13572.0 13572.0 172.0 898.0 13572.0 c 0 0 0 0 8453.0 3131.0 626.0 154.0 199.0 761.0 516.0 g 0 0 0 0 561.0 572.0 553.0 172.0 103.0 984.0 3337.0 t 0 0 0 0 5119.0 13572.0 554.0 90.0 13572.0 13572.0 1372.0

MA0722.2_shift4 (VAX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0722.2 (VAX1); m=6/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.534331; ----yTAATtA ; cor=; Ncor= a 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 c 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 g 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 t 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0

MA0035.5_shift4 (GATA1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0035.5 (GATA1); m=7/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.519104; ----CTWATCT ; cor=; Ncor= a 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 7397.0 c 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 3025.0 g 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 765.0 t 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0 60641.0

MA0912.2_shift4 (HOXD3)
; oligos_6nt_test_vs_ctrl_m5 versus MA0912.2 (HOXD3); m=8/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.517537; ----CTAATTA ; cor=; Ncor= a 0 0 0 0 276.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 c 0 0 0 0 11615.0 94.0 742.0 0.0 0.0 0.0 0.0 g 0 0 0 0 827.0 0.0 0.0 0.0 0.0 4453.0 2198.0 t 0 0 0 0 2947.0 14562.0 0.0 0.0 14562.0 14562.0 0.0

MA1608.2_rc_shift4 (Isl1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1608.2_rc (Isl1_rc); m=9/99; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.516699; ----cTAATGG ; cor=; Ncor= a 0 0 0 0 436.0 110.0 5430.0 5482.0 32.0 266.0 379.0 c 0 0 0 0 3702.0 20.0 39.0 34.0 99.0 54.0 192.0 g 0 0 0 0 410.0 45.0 104.0 54.0 30.0 4885.0 4710.0 t 0 0 0 0 1089.0 5462.0 64.0 67.0 5476.0 432.0 356.0

MA1518.3_rc_shift3 (Lhx1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1518.3_rc (Lhx1_rc); m=10/99; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.516423; ---gcTAATTA ; cor=; Ncor= a 0 0 0 45.0 36.0 13.0 407.0 438.0 10.0 3.0 411.0 c 0 0 0 59.0 260.0 24.0 28.0 1.0 5.0 16.0 6.0 g 0 0 0 276.0 64.0 5.0 16.0 5.0 2.0 30.0 24.0 t 0 0 0 74.0 94.0 412.0 3.0 10.0 437.0 405.0 13.0

MA0661.2_shift4 (MEOX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0661.2 (MEOX1); m=11/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.511165; ----sTAATTA ; cor=; Ncor= a 0 0 0 0 150.0 64.0 3000.0 3000.0 8.0 14.0 3000.0 c 0 0 0 0 1637.0 406.0 848.0 0.0 29.0 242.0 0.0 g 0 0 0 0 1363.0 53.0 151.0 2.0 0.0 328.0 338.0 t 0 0 0 0 115.0 3000.0 39.0 3.0 3000.0 3000.0 6.0

MA0701.3_shift4 (LHX9)
; oligos_6nt_test_vs_ctrl_m5 versus MA0701.3 (LHX9); m=12/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.509495; ----CyAATTA ; cor=; Ncor= a 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 c 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 g 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 t 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0

MA0903.2_rc_shift5 (HOXB3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0903.2_rc (HOXB3_rc); m=13/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.509203; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 574.0 12899.0 12899.0 242.0 697.0 7920.0 c 0 0 0 0 0 0.0 0.0 0.0 640.0 838.0 604.0 g 0 0 0 0 0 119.0 839.0 150.0 545.0 5106.0 4979.0 t 0 0 0 0 0 12899.0 441.0 0.0 12899.0 7793.0 1744.0

MA0075.4_shift4 (PRRX2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0075.4 (PRRX2); m=14/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.508859; ----cyAATTA ; cor=; Ncor= a 0 0 0 0 778.0 122.0 6720.0 6720.0 0.0 0.0 6720.0 c 0 0 0 0 6720.0 2008.0 29.0 0.0 0.0 0.0 1.0 g 0 0 0 0 1613.0 131.0 3.0 0.0 0.0 0.0 399.0 t 0 0 0 0 1933.0 4711.0 0.0 0.0 6720.0 6720.0 0.0

MA0887.2_rc_shift5 (EVX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0887.2_rc (EVX1_rc); m=15/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.506285; -----TAATta ; cor=; Ncor= a 0 0 0 0 0 172.0 7894.0 7894.0 0.0 358.0 7894.0 c 0 0 0 0 0 725.0 171.0 267.0 236.0 1885.0 269.0 g 0 0 0 0 0 14.0 463.0 67.0 29.0 1752.0 2343.0 t 0 0 0 0 0 7894.0 232.0 0.0 7894.0 3899.0 1196.0

MA0888.2_rc_shift5 (EVX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0888.2_rc (EVX2_rc); m=16/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.505613; -----TAATtA ; cor=; Ncor= a 0 0 0 0 0 446.0 20419.0 20419.0 0.0 752.0 20419.0 c 0 0 0 0 0 1559.0 445.0 702.0 881.0 4541.0 969.0 g 0 0 0 0 0 0.0 863.0 166.0 156.0 5018.0 5669.0 t 0 0 0 0 0 20419.0 303.0 5.0 20419.0 10108.0 2541.0

MA0892.2_rc_shift5 (GSX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0892.2_rc (GSX1_rc); m=17/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.505446; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 103.0 1183.0 1183.0 50.0 177.0 733.0 c 0 0 0 0 0 9.0 0.0 3.0 123.0 60.0 48.0 g 0 0 0 0 0 0.0 106.0 79.0 106.0 402.0 450.0 t 0 0 0 0 0 1183.0 106.0 90.0 1183.0 781.0 124.0

MA0675.2_rc_shift5 (NKX6-2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0675.2_rc (NKX6-2_rc); m=18/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.504307; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 678.0 18935.0 18935.0 546.0 2582.0 11104.0 c 0 0 0 0 0 775.0 551.0 0.0 191.0 1053.0 814.0 g 0 0 0 0 0 370.0 2233.0 0.0 310.0 7581.0 7831.0 t 0 0 0 0 0 18935.0 2468.0 584.0 18935.0 11354.0 1172.0

MA0132.3_rc_shift5 (PDX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0132.3_rc (PDX1_rc); m=19/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.500641; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 7130.0 7130.0 0.0 78.0 4661.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 185.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 45.0 2291.0 2469.0 t 0 0 0 0 0 7130.0 0.0 0.0 7130.0 4839.0 292.0

MA1463.2_shift4 (ARGFX)
; oligos_6nt_test_vs_ctrl_m5 versus MA1463.2 (ARGFX); m=20/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.49975; ----cTAATTA ; cor=; Ncor= a 0 0 0 0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 c 0 0 0 0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 g 0 0 0 0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 t 0 0 0 0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0

MA2119.1_shift4 (HOXA3)
; oligos_6nt_test_vs_ctrl_m5 versus MA2119.1 (HOXA3); m=21/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.498221; ----sTMATTA ; cor=; Ncor= a 0 0 0 0 93.0 0.0 2540.0 2540.0 0.0 0.0 2540.0 c 0 0 0 0 1246.0 502.0 1022.0 0.0 0.0 0.0 0.0 g 0 0 0 0 1294.0 0.0 10.0 0.0 0.0 517.0 361.0 t 0 0 0 0 138.0 2540.0 0.0 0.0 2540.0 2540.0 0.0

MA1498.3_rc_shift5 (HOXA7_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1498.3_rc (HOXA7_rc); m=22/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.497579; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 806.0 8075.0 8075.0 306.0 815.0 3085.0 c 0 0 0 0 0 252.0 0.0 0.0 622.0 525.0 310.0 g 0 0 0 0 0 478.0 439.0 0.0 199.0 3628.0 4990.0 t 0 0 0 0 0 8075.0 994.0 2.0 8075.0 4447.0 1082.0

MA0710.2_shift4 (NOTO)
; oligos_6nt_test_vs_ctrl_m5 versus MA0710.2 (NOTO); m=23/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.497289; ----ytMATTA ; cor=; Ncor= a 0 0 0 0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 c 0 0 0 0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 g 0 0 0 0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 t 0 0 0 0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0

MA0876.2_rc_shift5 (BSX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0876.2_rc (BSX_rc); m=24/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.497156; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 8832.0 8832.0 66.0 116.0 3247.0 c 0 0 0 0 0 0.0 0.0 0.0 1078.0 2197.0 103.0 g 0 0 0 0 0 0.0 0.0 0.0 194.0 2483.0 5585.0 t 0 0 0 0 0 8832.0 96.0 0.0 8832.0 4036.0 688.0

MA0630.2_shift5 (SHOX)
; oligos_6nt_test_vs_ctrl_m5 versus MA0630.2 (SHOX); m=25/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.495581; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 74.0 852.0 991.0 15.0 98.0 416.0 c 0 0 0 0 0 30.0 48.0 2.0 15.0 50.0 48.0 g 0 0 0 0 0 9.0 55.0 5.0 27.0 84.0 424.0 t 0 0 0 0 0 886.0 45.0 2.0 943.0 768.0 111.0

MA0723.3_rc_shift5 (VAX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0723.3_rc (VAX2_rc); m=26/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.49406; -----TAATtr ; cor=; Ncor= a 0 0 0 0 0 1082.0 13498.0 13498.0 1850.0 2652.0 7807.0 c 0 0 0 0 0 0.0 2988.0 0.0 0.0 962.0 117.0 g 0 0 0 0 0 0.0 133.0 0.0 422.0 5627.0 5691.0 t 0 0 0 0 0 13498.0 1361.0 357.0 13498.0 13498.0 857.0

MA0875.2_rc_shift5 (BARX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0875.2_rc (BARX1_rc); m=27/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.493122; -----TAATkg ; cor=; Ncor= a 0 0 0 0 0 0.0 6805.0 6805.0 0.0 87.0 1667.0 c 0 0 0 0 0 0.0 0.0 0.0 192.0 1386.0 246.0 g 0 0 0 0 0 0.0 0.0 0.0 207.0 1992.0 5138.0 t 0 0 0 0 0 6805.0 0.0 0.0 6805.0 3339.0 590.0

MA0618.2_rc_shift4 (LBX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0618.2_rc (LBX1_rc); m=28/99; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.493035; ----CYARTTA ; cor=; Ncor= a 0 0 0 0 57.0 0.0 738.0 738.0 0.0 0.0 951.0 c 0 0 0 0 799.0 268.0 119.0 0.0 0.0 0.0 0.0 g 0 0 0 0 114.0 0.0 0.0 262.0 0.0 0.0 49.0 t 0 0 0 0 29.0 731.0 143.0 0.0 999.0 999.0 0.0

MA0068.2_shift4 (PAX4)
; oligos_6nt_test_vs_ctrl_m5 versus MA0068.2 (PAX4); m=29/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.491395; ----ctAATTA ; cor=; Ncor= a 0 0 0 0 37.0 58.0 333.0 333.0 0.0 18.0 333.0 c 0 0 0 0 333.0 30.0 2.0 0.0 0.0 11.0 89.0 g 0 0 0 0 47.0 120.0 0.0 0.0 5.0 10.0 11.0 t 0 0 0 0 105.0 333.0 3.0 0.0 333.0 333.0 12.0

MA0644.3_shift4 (ESX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0644.3 (ESX1); m=30/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.490882; ----yyAATTA ; cor=; Ncor= a 0 0 0 0 1070.0 589.0 19670.0 19670.0 0.0 47.0 19670.0 c 0 0 0 0 11980.0 7595.0 634.0 95.0 0.0 1009.0 0.0 g 0 0 0 0 2110.0 0.0 821.0 0.0 0.0 225.0 925.0 t 0 0 0 0 7690.0 12075.0 181.0 0.0 19670.0 19670.0 557.0

MA0707.3_rc_shift5 (MNX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0707.3_rc (MNX1_rc); m=31/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.490698; -----TAATyr ; cor=; Ncor= a 0 0 0 0 0 0.0 19178.0 19178.0 0.0 0.0 11058.0 c 0 0 0 0 0 0.0 797.0 0.0 0.0 16561.0 0.0 g 0 0 0 0 0 0.0 2158.0 0.0 0.0 3243.0 8120.0 t 0 0 0 0 0 19178.0 0.0 0.0 19178.0 19178.0 0.0

MA0706.2_shift4 (MEOX2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0706.2 (MEOX2); m=32/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.48928; ----sTaATtA ; cor=; Ncor= a 0 0 0 0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 c 0 0 0 0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 g 0 0 0 0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 t 0 0 0 0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0

MA1481.2_rc_shift5 (DRGX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1481.2_rc (DRGX_rc); m=33/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.489042; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 144.0 14867.0 14867.0 0.0 0.0 8870.0 c 0 0 0 0 0 962.0 209.0 0.0 0.0 2037.0 1111.0 g 0 0 0 0 0 17.0 813.0 0.0 0.0 501.0 5997.0 t 0 0 0 0 0 14867.0 0.0 0.0 14867.0 14867.0 1079.0

MA2093.1_shift4 (HOXB1)
; oligos_6nt_test_vs_ctrl_m5 versus MA2093.1 (HOXB1); m=34/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.488794; ----sTAATTA ; cor=; Ncor= a 0 0 0 0 71.0 0.0 2003.0 2003.0 0.0 0.0 2003.0 c 0 0 0 0 705.0 412.0 450.0 0.0 0.0 253.0 47.0 g 0 0 0 0 1298.0 0.0 307.0 0.0 1.0 262.0 633.0 t 0 0 0 0 0.0 2003.0 0.0 0.0 2003.0 2003.0 0.0

MA1507.2_rc_shift5 (HOXD4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1507.2_rc (HOXD4_rc); m=35/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.488335; -----TAATkR ; cor=; Ncor= a 0 0 0 0 0 0.0 3405.0 3405.0 0.0 0.0 3405.0 c 0 0 0 0 0 194.0 0.0 0.0 176.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1862.0 1184.0 t 0 0 0 0 0 3405.0 0.0 0.0 3405.0 1542.0 0.0

MA0702.3_shift4 (LMX1A)
; oligos_6nt_test_vs_ctrl_m5 versus MA0702.3 (LMX1A); m=36/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.487054; ----yTAATTA ; cor=; Ncor= a 0 0 0 0 90.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 c 0 0 0 0 2222.0 31.0 0.0 9.0 50.0 0.0 102.0 g 0 0 0 0 305.0 19.0 0.0 0.0 0.0 0.0 501.0 t 0 0 0 0 5133.0 7355.0 0.0 0.0 7355.0 7355.0 0.0

MA0658.2_shift4 (LHX6)
; oligos_6nt_test_vs_ctrl_m5 versus MA0658.2 (LHX6); m=37/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.486285; ----cTAATTA ; cor=; Ncor= a 0 0 0 0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 c 0 0 0 0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 g 0 0 0 0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 t 0 0 0 0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0

MA0721.2_rc_shift5 (UNCX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0721.2_rc (UNCX_rc); m=38/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.486171; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 3885.0 36926.0 36926.0 890.0 2629.0 20126.0 c 0 0 0 0 0 731.0 1782.0 117.0 420.0 4582.0 2086.0 g 0 0 0 0 0 2211.0 3958.0 806.0 1302.0 2540.0 16800.0 t 0 0 0 0 0 36926.0 3111.0 481.0 36926.0 36926.0 3975.0

MA1504.2_rc_shift5 (HOXC4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1504.2_rc (HOXC4_rc); m=39/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.485987; -----TAATkR ; cor=; Ncor= a 0 0 0 0 0 0.0 8759.0 8759.0 0.0 0.0 8759.0 c 0 0 0 0 0 825.0 0.0 0.0 583.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5152.0 3111.0 t 0 0 0 0 0 8759.0 0.0 0.0 8759.0 3607.0 188.0

MA0634.2_rc_shift5 (ALX3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0634.2_rc (ALX3_rc); m=40/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.485835; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 977.0 7877.0 7877.0 231.0 629.0 4510.0 c 0 0 0 0 0 87.0 239.0 8.0 141.0 885.0 345.0 g 0 0 0 0 0 449.0 729.0 72.0 317.0 506.0 3367.0 t 0 0 0 0 0 7877.0 697.0 76.0 7877.0 7877.0 794.0

MA1499.2_rc_shift5 (HOXB4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1499.2_rc (HOXB4_rc); m=41/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.484967; -----TAATkA ; cor=; Ncor= a 0 0 0 0 0 0.0 9080.0 9080.0 0.0 0.0 9080.0 c 0 0 0 0 0 55.0 271.0 0.0 265.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5459.0 2103.0 t 0 0 0 0 0 9080.0 0.0 0.0 9080.0 3621.0 0.0

MA0902.3_rc_shift5 (HOXB2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0902.3_rc (HOXB2_rc); m=42/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.484511; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 6827.0 6827.0 0.0 0.0 3993.0 c 0 0 0 0 0 0.0 1876.0 0.0 0.0 199.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3276.0 2834.0 t 0 0 0 0 0 6827.0 0.0 0.0 6827.0 6827.0 51.0

MA0882.2_rc_shift5 (DLX6_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0882.2_rc (DLX6_rc); m=43/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.484493; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 193.0 2623.0 2623.0 56.0 184.0 1212.0 c 0 0 0 0 0 16.0 68.0 0.0 0.0 143.0 21.0 g 0 0 0 0 0 30.0 140.0 0.0 124.0 273.0 1410.0 t 0 0 0 0 0 2623.0 48.0 12.0 2623.0 2623.0 137.0

MA0704.2_rc_shift5 (Lhx4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0704.2_rc (Lhx4_rc); m=44/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.48434; -----TAATTA ; cor=; Ncor= a 0 0 0 0 0 135.0 2896.0 2896.0 155.0 255.0 2896.0 c 0 0 0 0 0 316.0 57.0 0.0 0.0 309.0 0.0 g 0 0 0 0 0 39.0 446.0 0.0 0.0 428.0 912.0 t 0 0 0 0 0 2896.0 0.0 0.0 2896.0 2896.0 217.0

MA0880.2_rc_shift5 (Dlx3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0880.2_rc (Dlx3_rc); m=45/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.483726; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 691.0 7323.0 7323.0 299.0 643.0 3190.0 c 0 0 0 0 0 101.0 452.0 60.0 62.0 587.0 164.0 g 0 0 0 0 0 202.0 535.0 66.0 536.0 995.0 4133.0 t 0 0 0 0 0 7323.0 399.0 173.0 7323.0 7323.0 572.0

MA0716.2_rc_shift5 (PRRX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0716.2_rc (PRRX1_rc); m=46/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.483634; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 1229.0 23897.0 23897.0 209.0 810.0 12775.0 c 0 0 0 0 0 136.0 1004.0 0.0 202.0 1776.0 1121.0 g 0 0 0 0 0 644.0 2302.0 3.0 503.0 1088.0 11122.0 t 0 0 0 0 0 23897.0 1264.0 0.0 23897.0 23897.0 2373.0

MA0885.3_rc_shift4 (Dlx2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0885.3_rc (Dlx2_rc); m=47/99; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.483316; ----CTAATTG ; cor=; Ncor= a 0 0 0 0 723.0 377.0 6948.0 7175.0 143.0 138.0 908.0 c 0 0 0 0 5246.0 114.0 103.0 61.0 114.0 47.0 159.0 g 0 0 0 0 537.0 22.0 316.0 45.0 135.0 164.0 6082.0 t 0 0 0 0 931.0 6924.0 70.0 156.0 7045.0 7088.0 288.0

MA0879.3_rc_shift5 (DLX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0879.3_rc (DLX1_rc); m=48/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.483167; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 614.0 6231.0 6231.0 0.0 540.0 2171.0 c 0 0 0 0 0 168.0 155.0 0.0 0.0 954.0 0.0 g 0 0 0 0 0 0.0 639.0 0.0 222.0 1212.0 4059.0 t 0 0 0 0 0 6231.0 0.0 0.0 6231.0 6231.0 265.0

MA0886.2_rc_shift5 (EMX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0886.2_rc (EMX2_rc); m=49/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.482654; -----TAATTA ; cor=; Ncor= a 0 0 0 0 0 0.0 37262.0 37262.0 0.0 1236.0 29501.0 c 0 0 0 0 0 0.0 4025.0 0.0 0.0 678.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 4938.0 7761.0 t 0 0 0 0 0 37262.0 0.0 0.0 37262.0 37262.0 834.0

MA0717.2_rc_shift5 (RAX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0717.2_rc (RAX2_rc); m=50/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.482232; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 c 0 0 0 0 0 360.0 2513.0 125.0 757.0 4490.0 1688.0 g 0 0 0 0 0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 t 0 0 0 0 0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0

MA1577.2_rc_shift5 (TLX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1577.2_rc (TLX2_rc); m=51/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.482175; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 7799.0 7799.0 0.0 0.0 8156.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 80.0 1112.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7799.0 t 0 0 0 0 0 7799.0 0.0 0.0 7799.0 7799.0 1435.0

MA1519.2_shift4 (LHX5)
; oligos_6nt_test_vs_ctrl_m5 versus MA1519.2 (LHX5); m=52/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.482172; ----sYAATTA ; cor=; Ncor= a 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 c 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 g 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 t 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0

MA0674.2_rc_shift4 (NKX6-1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0674.2_rc (NKX6-1_rc); m=53/99; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.481081; ----tTAATkR ; cor=; Ncor= a 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 c 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 g 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 t 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0

MA0158.2_rc_shift4 (HOXA5_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0158.2_rc (HOXA5_rc); m=54/99; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.481051; ----sTAATkr ; cor=; Ncor= a 0 0 0 0 54.0 0.0 3130.0 3130.0 0.0 0.0 2078.0 c 0 0 0 0 1133.0 0.0 885.0 0.0 0.0 81.0 0.0 g 0 0 0 0 1463.0 0.0 0.0 0.0 0.0 1632.0 1052.0 t 0 0 0 0 480.0 3130.0 0.0 0.0 3130.0 3130.0 0.0

MA0662.2_rc_shift5 (MIXL1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0662.2_rc (MIXL1_rc); m=55/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.480842; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 2895.0 27042.0 27042.0 736.0 1038.0 15403.0 c 0 0 0 0 0 115.0 2031.0 181.0 556.0 3660.0 1245.0 g 0 0 0 0 0 1903.0 4270.0 510.0 662.0 1911.0 11639.0 t 0 0 0 0 0 27042.0 1385.0 0.0 27042.0 27042.0 2635.0

MA0881.2_rc_shift5 (Dlx4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0881.2_rc (Dlx4_rc); m=56/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.480699; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 1127.0 12054.0 12054.0 499.0 883.0 5213.0 c 0 0 0 0 0 134.0 542.0 38.0 55.0 739.0 145.0 g 0 0 0 0 0 316.0 868.0 85.0 744.0 1500.0 6841.0 t 0 0 0 0 0 12054.0 440.0 88.0 12054.0 12054.0 724.0

MA0900.3_rc_shift5 (HOXA2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0900.3_rc (HOXA2_rc); m=57/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.480521; -----TAATKA ; cor=; Ncor= a 0 0 0 0 0 0.0 56949.0 56949.0 0.0 0.0 56949.0 c 0 0 0 0 0 2052.0 0.0 0.0 0.0 290.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 17275.0 3636.0 t 0 0 0 0 0 56949.0 0.0 0.0 56949.0 39674.0 0.0

MA1476.3_rc_shift4 (Dlx5_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1476.3_rc (Dlx5_rc); m=58/99; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.480174; ----cTAATTG ; cor=; Ncor= a 0 0 0 0 561.0 198.0 3849.0 3960.0 58.0 64.0 494.0 c 0 0 0 0 2658.0 37.0 52.0 23.0 59.0 19.0 78.0 g 0 0 0 0 304.0 6.0 143.0 26.0 62.0 88.0 3363.0 t 0 0 0 0 554.0 3836.0 33.0 68.0 3898.0 3906.0 142.0

MA0720.2_rc_shift5 (Shox2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0720.2_rc (Shox2_rc); m=59/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.47971; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 895.0 18179.0 18179.0 79.0 766.0 9152.0 c 0 0 0 0 0 36.0 870.0 0.0 3.0 426.0 228.0 g 0 0 0 0 0 193.0 545.0 12.0 138.0 626.0 9027.0 t 0 0 0 0 0 18179.0 597.0 29.0 18179.0 18179.0 979.0

MA0125.2_shift5 (Nobox)
; oligos_6nt_test_vs_ctrl_m5 versus MA0125.2 (Nobox); m=60/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.478525; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 36.0 38.0 1.0 2.0 15.0 c 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 2.0 4.0 22.0 t 0 0 0 0 0 37.0 2.0 0.0 34.0 32.0 1.0

MA0612.3_rc_shift5 (EMX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0612.3_rc (EMX1_rc); m=61/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.478063; -----TAATTA ; cor=; Ncor= a 0 0 0 0 0 0.0 9544.0 9544.0 0.0 0.0 7281.0 c 0 0 0 0 0 0.0 933.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1235.0 2263.0 t 0 0 0 0 0 9544.0 0.0 0.0 9544.0 9544.0 19.0

MA0654.2_rc_shift5 (ISX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0654.2_rc (ISX_rc); m=62/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.474977; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 49.0 2065.0 2065.0 10.0 24.0 1061.0 c 0 0 0 0 0 0.0 24.0 0.0 0.0 5.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 16.0 48.0 1003.0 t 0 0 0 0 0 2065.0 0.0 0.0 2065.0 2065.0 10.0

MA0699.2_rc_shift5 (LBX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0699.2_rc (LBX2_rc); m=63/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.474954; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 148.0 2996.0 2996.0 89.0 57.0 1362.0 c 0 0 0 0 0 106.0 293.0 118.0 130.0 325.0 109.0 g 0 0 0 0 0 34.0 258.0 29.0 290.0 338.0 1634.0 t 0 0 0 0 0 2996.0 150.0 0.0 2996.0 2996.0 157.0

MA0890.2_rc_shift5 (GBX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0890.2_rc (GBX2_rc); m=64/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.474036; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 650.0 27366.0 27366.0 25.0 227.0 11855.0 c 0 0 0 0 0 30.0 673.0 65.0 114.0 1113.0 106.0 g 0 0 0 0 0 73.0 570.0 61.0 250.0 570.0 15511.0 t 0 0 0 0 0 27366.0 318.0 0.0 27366.0 27366.0 699.0

MA0718.2_rc_shift5 (RAX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0718.2_rc (RAX_rc); m=65/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.472874; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 126.0 2412.0 2412.0 24.0 40.0 1131.0 c 0 0 0 0 0 20.0 49.0 0.0 12.0 3.0 25.0 g 0 0 0 0 0 0.0 71.0 0.0 38.0 17.0 1281.0 t 0 0 0 0 0 2412.0 71.0 123.0 2412.0 2412.0 214.0

MA0889.2_shift4 (GBX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0889.2 (GBX1); m=66/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.472111; ----syAATTA ; cor=; Ncor= a 0 0 0 0 1674.0 243.0 27339.0 27339.0 45.0 312.0 27339.0 c 0 0 0 0 14978.0 13543.0 589.0 172.0 128.0 438.0 50.0 g 0 0 0 0 6964.0 15.0 758.0 29.0 1.0 246.0 8.0 t 0 0 0 0 3723.0 13796.0 157.0 23.0 27339.0 27339.0 321.0

MA0621.2_shift4 (mix-a)
; oligos_6nt_test_vs_ctrl_m5 versus MA0621.2 (mix-a); m=67/99; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.471047; ----tTAATTA ; cor=; Ncor= a 0 0 0 0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 c 0 0 0 0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 g 0 0 0 0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 t 0 0 0 0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0

MA0894.2_shift5 (HESX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0894.2 (HESX1); m=68/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.470311; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 187.0 4072.0 4072.0 0.0 0.0 1892.0 c 0 0 0 0 0 0.0 0.0 7.0 0.0 15.0 38.0 g 0 0 0 0 0 34.0 53.0 9.0 15.0 0.0 2180.0 t 0 0 0 0 0 4072.0 31.0 0.0 4072.0 4072.0 97.0

MA0027.3_rc_shift5 (EN1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0027.3_rc (EN1_rc); m=69/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.467972; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 132.0 2891.0 2891.0 0.0 0.0 1562.0 c 0 0 0 0 0 30.0 162.0 0.0 0.0 71.0 5.0 g 0 0 0 0 0 0.0 483.0 0.0 28.0 99.0 1328.0 t 0 0 0 0 0 2891.0 57.0 0.0 2891.0 2891.0 104.0

MA0709.2_rc_shift5 (Msx3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0709.2_rc (Msx3_rc); m=70/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.466015; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 213.0 8380.0 8380.0 5.0 94.0 2582.0 c 0 0 0 0 0 88.0 105.0 0.0 38.0 237.0 29.0 g 0 0 0 0 0 59.0 215.0 0.0 89.0 160.0 5798.0 t 0 0 0 0 0 8380.0 121.0 0.0 8380.0 8380.0 312.0

MA0666.3_rc_shift5 (MSX1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0666.3_rc (MSX1_rc); m=71/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.46593; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 5064.0 5064.0 0.0 0.0 2415.0 c 0 0 0 0 0 159.0 0.0 0.0 0.0 146.0 0.0 g 0 0 0 0 0 0.0 280.0 0.0 42.0 125.0 5064.0 t 0 0 0 0 0 5064.0 0.0 0.0 5064.0 5064.0 227.0

MA0648.2_shift5 (GSC)
; oligos_6nt_test_vs_ctrl_m5 versus MA0648.2 (GSC); m=72/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.463109; -----TAATCC ; cor=; Ncor= a 0 0 0 0 0 0.0 6081.0 6081.0 0.0 416.0 315.0 c 0 0 0 0 0 54.0 71.0 0.0 25.0 6081.0 6081.0 g 0 0 0 0 0 0.0 176.0 0.0 144.0 452.0 828.0 t 0 0 0 0 0 6081.0 89.0 0.0 6081.0 787.0 1099.0

MA0891.2_shift5 (GSC2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0891.2 (GSC2); m=73/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.462352; -----TAATCc ; cor=; Ncor= a 0 0 0 0 0 116.0 2016.0 2016.0 0.0 255.0 182.0 c 0 0 0 0 0 0.0 87.0 11.0 41.0 2016.0 2016.0 g 0 0 0 0 0 0.0 56.0 0.0 145.0 179.0 422.0 t 0 0 0 0 0 2016.0 201.0 132.0 2016.0 204.0 439.0

MA0708.3_rc_shift5 (MSX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0708.3_rc (MSX2_rc); m=74/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.461827; -----TAATTR ; cor=; Ncor= a 0 0 0 0 0 0.0 6353.0 6353.0 0.0 0.0 2737.0 c 0 0 0 0 0 243.0 0.0 0.0 0.0 259.0 0.0 g 0 0 0 0 0 0.0 600.0 0.0 112.0 175.0 6353.0 t 0 0 0 0 0 6353.0 62.0 0.0 6353.0 6353.0 220.0

MA1495.2_shift5 (HOXA1)
; oligos_6nt_test_vs_ctrl_m5 versus MA1495.2 (HOXA1); m=75/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.461812; -----TAATtA ; cor=; Ncor= a 0 0 0 0 0 0.0 7406.0 7406.0 0.0 0.0 7406.0 c 0 0 0 0 0 1546.0 2083.0 0.0 0.0 1310.0 0.0 g 0 0 0 0 0 0.0 1244.0 0.0 0.0 2265.0 1576.0 t 0 0 0 0 0 7406.0 0.0 0.0 7406.0 7406.0 0.0

MA0904.3_shift5 (HOXB5)
; oligos_6nt_test_vs_ctrl_m5 versus MA0904.3 (HOXB5); m=76/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.461377; -----TMATKA ; cor=; Ncor= a 0 0 0 0 0 0.0 3067.0 3067.0 0.0 6.0 3067.0 c 0 0 0 0 0 537.0 1031.0 0.0 0.0 26.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1061.0 564.0 t 0 0 0 0 0 3067.0 0.0 0.0 3067.0 3067.0 0.0

MA0628.2_shift5 (POU6F1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0628.2 (POU6F1); m=77/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.460855; -----TAATTA ; cor=; Ncor= a 0 0 0 0 0 32.0 905.0 938.0 14.0 18.0 950.0 c 0 0 0 0 0 10.0 70.0 34.0 14.0 8.0 8.0 g 0 0 0 0 0 8.0 8.0 14.0 34.0 70.0 10.0 t 0 0 0 0 0 950.0 18.0 14.0 938.0 905.0 32.0

MA0854.2_shift4 (Alx1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0854.2 (Alx1); m=78/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.460389; ----yTAATTA ; cor=; Ncor= a 0 0 0 0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 c 0 0 0 0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 g 0 0 0 0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 t 0 0 0 0 53.0 92.0 0.0 1.0 98.0 98.0 1.0

MA1505.2_rc_shift5 (HOXC8_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1505.2_rc (HOXC8_rc); m=79/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.455491; -----YAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 9273.0 9273.0 0.0 983.0 9273.0 c 0 0 0 0 0 4325.0 2656.0 211.0 0.0 19.0 0.0 g 0 0 0 0 0 0.0 99.0 0.0 20.0 2727.0 4555.0 t 0 0 0 0 0 9273.0 961.0 0.0 9273.0 9273.0 0.0

MA0705.2_shift5 (Lhx8)
; oligos_6nt_test_vs_ctrl_m5 versus MA0705.2 (Lhx8); m=80/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.451761; -----YAATYR ; cor=; Ncor= a 0 0 0 0 0 0.0 5092.0 5092.0 0.0 0.0 5092.0 c 0 0 0 0 0 1996.0 160.0 0.0 0.0 2083.0 0.0 g 0 0 0 0 0 0.0 1670.0 0.0 0.0 88.0 1929.0 t 0 0 0 0 0 5092.0 0.0 0.0 5092.0 5092.0 0.0

MA0893.3_rc_shift5 (GSX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0893.3_rc (GSX2_rc); m=81/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.450654; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 20.0 4998.0 4998.0 0.0 29.0 4998.0 c 0 0 0 0 0 1005.0 77.0 0.0 708.0 95.0 400.0 g 0 0 0 0 0 0.0 0.0 121.0 0.0 2223.0 2611.0 t 0 0 0 0 0 4998.0 0.0 0.0 4998.0 2775.0 503.0

MA0724.1_rc_shift4 (VENTX_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0724.1_rc (VENTX_rc); m=82/99; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.45038; ----yTAATyG ; cor=; Ncor= a 0 0 0 0 2189.0 0.0 23923.0 23923.0 74.0 626.0 3964.0 c 0 0 0 0 15103.0 0.0 0.0 0.0 0.0 16128.0 0.0 g 0 0 0 0 706.0 0.0 0.0 0.0 203.0 5650.0 23923.0 t 0 0 0 0 8820.0 23923.0 0.0 0.0 23923.0 7795.0 562.0

MA0700.3_rc_shift5 (LHX2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0700.3_rc (LHX2_rc); m=83/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.447865; -----TAATTG ; cor=; Ncor= a 0 0 0 0 0 39.0 6256.0 6082.0 133.0 420.0 640.0 c 0 0 0 0 0 6.0 5.0 64.0 77.0 52.0 37.0 g 0 0 0 0 0 13.0 5.0 58.0 101.0 71.0 5612.0 t 0 0 0 0 0 6275.0 67.0 129.0 6022.0 5790.0 44.0

MA1502.2_rc_shift5 (HOXB8_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1502.2_rc (HOXB8_rc); m=84/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.445032; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 4474.0 4474.0 0.0 0.0 1914.0 c 0 0 0 0 0 0.0 542.0 0.0 0.0 89.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3374.0 2560.0 t 0 0 0 0 0 4474.0 284.0 0.0 4474.0 4474.0 0.0

MA1497.2_rc_shift5 (HOXA6_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1497.2_rc (HOXA6_rc); m=85/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.444171; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 663.0 7201.0 7201.0 11.0 1482.0 4234.0 c 0 0 0 0 0 502.0 553.0 0.0 908.0 833.0 100.0 g 0 0 0 0 0 94.0 233.0 0.0 745.0 3768.0 2967.0 t 0 0 0 0 0 7201.0 1911.0 0.0 7201.0 7201.0 87.0

MA1500.2_shift5 (HOXB6)
; oligos_6nt_test_vs_ctrl_m5 versus MA1500.2 (HOXB6); m=86/99; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.44416; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 6192.0 6192.0 0.0 403.0 3128.0 c 0 0 0 0 0 710.0 647.0 0.0 436.0 926.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 727.0 4139.0 3064.0 t 0 0 0 0 0 6192.0 564.0 0.0 6192.0 6192.0 0.0

MA0910.3_rc_shift5 (HOXD8_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0910.3_rc (HOXD8_rc); m=87/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.443298; -----TAATkr ; cor=; Ncor= a 0 0 0 0 0 0.0 3629.0 3629.0 0.0 0.0 1480.0 c 0 0 0 0 0 0.0 507.0 0.0 0.0 47.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3006.0 2150.0 t 0 0 0 0 0 3629.0 178.0 0.0 3629.0 3629.0 0.0

MA0711.2_shift5 (OTX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0711.2 (OTX1); m=88/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.439117; -----TAATCc ; cor=; Ncor= a 0 0 0 0 0 745.0 23441.0 23441.0 243.0 647.0 789.0 c 0 0 0 0 0 90.0 0.0 0.0 0.0 23441.0 23441.0 g 0 0 0 0 0 0.0 254.0 0.0 3160.0 659.0 8662.0 t 0 0 0 0 0 23441.0 544.0 0.0 23441.0 378.0 3363.0

MA1501.2_rc_shift5 (HOXB7_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1501.2_rc (HOXB7_rc); m=89/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.438885; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 828.0 828.0 0.0 0.0 828.0 c 0 0 0 0 0 151.0 0.0 31.0 0.0 0.0 51.0 g 0 0 0 0 0 0.0 3.0 0.0 29.0 222.0 359.0 t 0 0 0 0 0 828.0 79.0 0.0 828.0 828.0 0.0

MA0642.3_rc_shift5 (EN2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0642.3_rc (EN2_rc); m=90/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.438539; -----TAATTr ; cor=; Ncor= a 0 0 0 0 0 0.0 898.0 898.0 0.0 103.0 321.0 c 0 0 0 0 0 168.0 0.0 0.0 31.0 44.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 198.0 577.0 t 0 0 0 0 0 898.0 28.0 0.0 898.0 898.0 0.0

MA1496.2_rc_shift5 (HOXA4_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1496.2_rc (HOXA4_rc); m=91/99; ncol2=7; w=0; offset=5; strand=R; shift=5; score=0.428408; -----TAATkR ; cor=; Ncor= a 0 0 0 0 0 0.0 2454.0 2454.0 0.0 0.0 2454.0 c 0 0 0 0 0 260.0 171.0 39.0 684.0 176.0 0.0 g 0 0 0 0 0 146.0 173.0 0.0 0.0 1561.0 967.0 t 0 0 0 0 0 2454.0 0.0 0.0 2454.0 893.0 0.0

MA0714.2_shift5 (PITX3)
; oligos_6nt_test_vs_ctrl_m5 versus MA0714.2 (PITX3); m=92/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.426942; -----TAATCC ; cor=; Ncor= a 0 0 0 0 0 493.0 6253.0 6253.0 262.0 318.0 227.0 c 0 0 0 0 0 51.0 32.0 0.0 138.0 6253.0 6253.0 g 0 0 0 0 0 9.0 260.0 15.0 1101.0 166.0 239.0 t 0 0 0 0 0 6253.0 158.0 0.0 6253.0 236.0 968.0

MA2334.1_shift2 (ZNF547)
; oligos_6nt_test_vs_ctrl_m5 versus MA2334.1 (ZNF547); m=93/99; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.425976; --TGCTAATGC ; cor=; Ncor= a 0 0 42.0 16.0 3.0 38.0 402.0 423.0 27.0 2.0 3.0 c 0 0 15.0 12.0 420.0 12.0 13.0 2.0 11.0 8.0 429.0 g 0 0 42.0 394.0 3.0 4.0 12.0 10.0 2.0 393.0 3.0 t 0 0 338.0 15.0 11.0 383.0 10.0 2.0 397.0 34.0 2.0

MA0703.3_rc_shift4 (LMX1B_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0703.3_rc (LMX1B_rc); m=94/99; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.42445; ----tTAATTA ; cor=; Ncor= a 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 c 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0

MA0682.3_shift5 (PITX1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0682.3 (PITX1); m=95/99; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.420418; -----TAATCC ; cor=; Ncor= a 0 0 0 0 0 0.0 10531.0 10531.0 0.0 143.0 68.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 10531.0 10531.0 g 0 0 0 0 0 0.0 0.0 0.0 1039.0 0.0 134.0 t 0 0 0 0 0 10531.0 0.0 0.0 10531.0 141.0 547.0

MA0467.3_rc_shift5 (Crx_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0467.3_rc (Crx_rc); m=96/99; ncol2=6; w=0; offset=5; strand=R; shift=5; score=0.419389; -----TAATCC ; cor=; Ncor= a 0 0 0 0 0 44.0 4238.0 4281.0 47.0 71.0 30.0 c 0 0 0 0 0 23.0 20.0 9.0 42.0 4200.0 4129.0 g 0 0 0 0 0 25.0 25.0 32.0 17.0 36.0 155.0 t 0 0 0 0 0 4241.0 50.0 11.0 4227.0 26.0 19.0

MA1549.2_shift5 (POU6F1)
; oligos_6nt_test_vs_ctrl_m5 versus MA1549.2 (POU6F1); m=97/99; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.415497; -----TAATGA ; cor=; Ncor= a 0 0 0 0 0 164.0 6413.0 6413.0 0.0 67.0 6413.0 c 0 0 0 0 0 273.0 179.0 0.0 0.0 206.0 96.0 g 0 0 0 0 0 10.0 255.0 0.0 298.0 5799.0 0.0 t 0 0 0 0 0 6413.0 0.0 0.0 6413.0 615.0 411.0

MA1530.2_rc_shift4 (NKX6-3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1530.2_rc (NKX6-3_rc); m=98/99; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.415442; ----wTAATGr ; cor=; Ncor= a 0 0 0 0 3753.0 0.0 6906.0 6906.0 0.0 626.0 6906.0 c 0 0 0 0 379.0 701.0 0.0 0.0 0.0 533.0 0.0 g 0 0 0 0 789.0 0.0 467.0 0.0 0.0 6753.0 4562.0 t 0 0 0 0 6906.0 6906.0 0.0 0.0 6906.0 153.0 0.0

MA1547.2_shift4 (PITX2)
; oligos_6nt_test_vs_ctrl_m5 versus MA1547.2 (PITX2); m=99/99; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.412603; ----yTAATCC ; cor=; Ncor= a 0 0 0 0 924.0 0.0 8019.0 8019.0 0.0 0.0 0.0 c 0 0 0 0 2782.0 51.0 0.0 0.0 0.0 8019.0 8019.0 g 0 0 0 0 454.0 0.0 0.0 0.0 668.0 0.0 0.0 t 0 0 0 0 3859.0 8019.0 0.0 0.0 8019.0 0.0 189.0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift2 ; 39 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=12; shift=2; ncol=14; --hwCATGACACwt ; Alignment reference a 0 0 1513 1586 389 4860 160 155 4701 290 4598 230 2320 1301 c 0 0 1362 1233 4403 227 129 279 245 4764 138 4587 1115 1145 g 0 0 1102 1068 298 137 214 4797 178 186 104 304 575 1312 t 0 0 1404 1494 291 157 4878 150 257 141 541 260 1371 1623

MA1633.2_shift5 (BACH1)
; oligos_7nt_test_vs_ctrl_m2 versus MA1633.2 (BACH1); m=1/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.591796; -----ATGACTCAt ; cor=; Ncor= a 0 0 0 0 0 32322.0 7.0 0.0 32322.0 551.0 534.0 2834.0 32322.0 4970.0 c 0 0 0 0 0 1482.0 25.0 13.0 38.0 32322.0 31.0 32322.0 39.0 8737.0 g 0 0 0 0 0 6187.0 25.0 32322.0 24.0 0.0 3303.0 52.0 50.0 2962.0 t 0 0 0 0 0 1048.0 32322.0 811.0 14.0 517.0 32322.0 18.0 17.0 32322.0

MA1128.2_shift5 (FOSL1::JUN)
; oligos_7nt_test_vs_ctrl_m2 versus MA1128.2 (FOSL1::JUN); m=2/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.57492; -----rTGACTCAt ; cor=; Ncor= a 0 0 0 0 0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 c 0 0 0 0 0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 g 0 0 0 0 0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 t 0 0 0 0 0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0

MA1141.2_rc_shift5 (FOS::JUND_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA1141.2_rc (FOS::JUND_rc); m=3/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.570251; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 c 0 0 0 0 0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 g 0 0 0 0 0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 t 0 0 0 0 0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0

MA0655.1_shift5 (JDP2)
; oligos_7nt_test_vs_ctrl_m2 versus MA0655.1 (JDP2); m=4/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.567489; -----ATGASTCAT ; cor=; Ncor= a 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 c 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 g 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 t 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0

MA1101.3_shift4 (BACH2)
; oligos_7nt_test_vs_ctrl_m2 versus MA1101.3 (BACH2); m=5/38; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.566349; ----CATGAsTCAT ; cor=; Ncor= a 0 0 0 0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 c 0 0 0 0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 g 0 0 0 0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 t 0 0 0 0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0

MA0490.3_shift5 (JUNB)
; oligos_7nt_test_vs_ctrl_m2 versus MA0490.3 (JUNB); m=6/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.564816; -----ATGACTCAT ; cor=; Ncor= a 0 0 0 0 0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 c 0 0 0 0 0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 g 0 0 0 0 0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 t 0 0 0 0 0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0

MA1130.2_rc_shift5 (FOSL2::JUN_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA1130.2_rc (FOSL2::JUN_rc); m=7/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.563172; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 c 0 0 0 0 0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 g 0 0 0 0 0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 t 0 0 0 0 0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0

MA0099.4_rc_shift5 (FOS::JUN_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0099.4_rc (FOS::JUN_rc); m=8/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.561229; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 c 0 0 0 0 0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 g 0 0 0 0 0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 t 0 0 0 0 0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0

MA0477.3_shift5 (FOSL1)
; oligos_7nt_test_vs_ctrl_m2 versus MA0477.3 (FOSL1); m=9/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.559518; -----aTGACTCAt ; cor=; Ncor= a 0 0 0 0 0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 c 0 0 0 0 0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 g 0 0 0 0 0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 t 0 0 0 0 0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0

MA0491.3_shift5 (JUND)
; oligos_7nt_test_vs_ctrl_m2 versus MA0491.3 (JUND); m=10/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.554374; -----aTGACTCAT ; cor=; Ncor= a 0 0 0 0 0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 c 0 0 0 0 0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 g 0 0 0 0 0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 t 0 0 0 0 0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0

MA1137.2_shift5 (FOSL1::JUNB)
; oligos_7nt_test_vs_ctrl_m2 versus MA1137.2 (FOSL1::JUNB); m=11/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.552975; -----rTGAcTMAt ; cor=; Ncor= a 0 0 0 0 0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 c 0 0 0 0 0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 g 0 0 0 0 0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 t 0 0 0 0 0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0

MA1144.2_shift5 (FOSL2::JUND)
; oligos_7nt_test_vs_ctrl_m2 versus MA1144.2 (FOSL2::JUND); m=12/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.546396; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 c 0 0 0 0 0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 g 0 0 0 0 0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 t 0 0 0 0 0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0

MA1134.2_rc_shift5 (FOS::JUNB_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA1134.2_rc (FOS::JUNB_rc); m=13/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.545302; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 c 0 0 0 0 0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 g 0 0 0 0 0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 t 0 0 0 0 0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0

MA1135.2_shift5 (FOSB::JUNB)
; oligos_7nt_test_vs_ctrl_m2 versus MA1135.2 (FOSB::JUNB); m=14/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.534646; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 c 0 0 0 0 0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 g 0 0 0 0 0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 t 0 0 0 0 0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0

MA1138.2_shift5 (FOSL2::JUNB)
; oligos_7nt_test_vs_ctrl_m2 versus MA1138.2 (FOSL2::JUNB); m=15/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.534449; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 c 0 0 0 0 0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 g 0 0 0 0 0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 t 0 0 0 0 0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0

MA1132.2_shift5 (JUN::JUNB)
; oligos_7nt_test_vs_ctrl_m2 versus MA1132.2 (JUN::JUNB); m=16/38; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.533656; -----aTGACkCA- ; cor=; Ncor= a 0 0 0 0 0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 0 c 0 0 0 0 0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 0 g 0 0 0 0 0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 0 t 0 0 0 0 0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 0

MA0841.2_shift5 (NFE2)
; oligos_7nt_test_vs_ctrl_m2 versus MA0841.2 (NFE2); m=17/38; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.524669; -----ATGACTCAT ; cor=; Ncor= a 0 0 0 0 0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 c 0 0 0 0 0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 g 0 0 0 0 0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 t 0 0 0 0 0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0

MA0806.1_rc_shift6 (TBX4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0806.1_rc (TBX4_rc); m=18/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.505483; ------TcACACCT ; cor=; Ncor= a 0 0 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 c 0 0 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 g 0 0 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 t 0 0 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0

MA0489.3_shift6 (Jun)
; oligos_7nt_test_vs_ctrl_m2 versus MA0489.3 (Jun); m=19/38; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.500829; ------TGACTCAt ; cor=; Ncor= a 0 0 0 0 0 0 1166.0 968.0 89245.0 3860.0 3034.0 3691.0 89496.0 4975.0 c 0 0 0 0 0 0 716.0 1468.0 1493.0 71105.0 920.0 88215.0 1827.0 14637.0 g 0 0 0 0 0 0 718.0 88928.0 1717.0 14953.0 1009.0 1228.0 1147.0 13040.0 t 0 0 0 0 0 0 91503.0 2739.0 1648.0 4185.0 89140.0 969.0 1633.0 61451.0

MA0807.1_rc_shift6 (TBX5_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0807.1_rc (TBX5_rc); m=20/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.500756; ------TmACACCT ; cor=; Ncor= a 0 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 c 0 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 g 0 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 t 0 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0

MA1142.2_shift5 (FOSL1::JUND)
; oligos_7nt_test_vs_ctrl_m2 versus MA1142.2 (FOSL1::JUND); m=21/38; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.49993; -----rTGActmA- ; cor=; Ncor= a 0 0 0 0 0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 0 c 0 0 0 0 0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 0 g 0 0 0 0 0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 0 t 0 0 0 0 0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 0

MA0801.1_rc_shift6 (MGA_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0801.1_rc (MGA_rc); m=22/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.490164; ------TCACACCT ; cor=; Ncor= a 0 0 0 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 c 0 0 0 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 g 0 0 0 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 t 0 0 0 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0

MA0089.3_shift5 (MAFG::NFE2L1)
; oligos_7nt_test_vs_ctrl_m2 versus MA0089.3 (MAFG::NFE2L1); m=23/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.48817; -----ATGACTCAG ; cor=; Ncor= a 0 0 0 0 0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 c 0 0 0 0 0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 g 0 0 0 0 0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 t 0 0 0 0 0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0

MA0805.1_rc_shift6 (TBX1_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0805.1_rc (TBX1_rc); m=24/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.480915; ------TCACACCT ; cor=; Ncor= a 0 0 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 c 0 0 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 g 0 0 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 t 0 0 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0

MA0501.2_shift5 (MAF::NFE2)
; oligos_7nt_test_vs_ctrl_m2 versus MA0501.2 (MAF::NFE2); m=25/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.478987; -----rTGACTCAG ; cor=; Ncor= a 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 c 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 g 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 t 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0

MA0150.3_shift5 (Nfe2l2)
; oligos_7nt_test_vs_ctrl_m2 versus MA0150.3 (Nfe2l2); m=26/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.478752; -----rTGACTCAG ; cor=; Ncor= a 0 0 0 0 0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 c 0 0 0 0 0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 g 0 0 0 0 0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 t 0 0 0 0 0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0

MA0476.2_rc_shift5 (FOS_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0476.2_rc (FOS_rc); m=27/38; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.472495; -----ATGAsTCA- ; cor=; Ncor= a 0 0 0 0 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 c 0 0 0 0 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 g 0 0 0 0 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 t 0 0 0 0 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0

MA0775.2_shift5 (MEIS3)
; oligos_7nt_test_vs_ctrl_m2 versus MA0775.2 (MEIS3); m=28/38; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.461986; -----wTGACAg-- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 0 0

MA0093.4_rc_shift0 (USF1_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0093.4_rc (USF1_rc); m=29/38; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.460723; GTCACATGAC---- ; cor=; Ncor= a 9021.0 2023.0 480.0 54021.0 418.0 38065.0 549.0 499.0 38038.0 1636.0 0 0 0 0 c 3018.0 4679.0 53634.0 601.0 50076.0 3666.0 477.0 766.0 3912.0 43094.0 0 0 0 0 g 41450.0 3045.0 817.0 264.0 1387.0 13185.0 654.0 53536.0 9543.0 3030.0 0 0 0 0 t 1845.0 45587.0 403.0 448.0 3453.0 418.0 53654.0 533.0 3841.0 7574.0 0 0 0 0

MA1988.2_shift6 (Atf3)
; oligos_7nt_test_vs_ctrl_m2 versus MA1988.2 (Atf3); m=30/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.448885; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 581.0 1561.0 53318.0 2262.0 2338.0 5421.0 52046.0 0 c 0 0 0 0 0 0 669.0 443.0 356.0 45670.0 504.0 46610.0 673.0 0 g 0 0 0 0 0 0 357.0 48774.0 471.0 4498.0 1365.0 574.0 1086.0 0 t 0 0 0 0 0 0 53085.0 3914.0 547.0 2262.0 50485.0 2087.0 887.0 0

MA1928.2_rc_shift6 (BNC2_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA1928.2_rc (BNC2_rc); m=31/38; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.446151; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 79.0 106.0 5400.0 275.0 191.0 282.0 5363.0 0 c 0 0 0 0 0 0 56.0 112.0 80.0 4332.0 61.0 5184.0 96.0 0 g 0 0 0 0 0 0 54.0 5238.0 106.0 838.0 117.0 72.0 66.0 0 t 0 0 0 0 0 0 5483.0 216.0 86.0 227.0 5303.0 134.0 147.0 0

MA0835.3_shift6 (BATF3)
; oligos_7nt_test_vs_ctrl_m2 versus MA0835.3 (BATF3); m=32/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.444525; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 0 c 0 0 0 0 0 0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 0 g 0 0 0 0 0 0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 0 t 0 0 0 0 0 0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 0

MA0462.3_shift6 (BATF::JUN)
; oligos_7nt_test_vs_ctrl_m2 versus MA0462.3 (BATF::JUN); m=33/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.440161; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 0 c 0 0 0 0 0 0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 0 g 0 0 0 0 0 0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 0 t 0 0 0 0 0 0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 0

MA1634.2_shift6 (BATF)
; oligos_7nt_test_vs_ctrl_m2 versus MA1634.2 (BATF); m=34/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.439926; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 0 c 0 0 0 0 0 0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 0 g 0 0 0 0 0 0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 0 t 0 0 0 0 0 0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 0

MA1995.2_shift3 (Npas4)
; oligos_7nt_test_vs_ctrl_m2 versus MA1995.2 (Npas4); m=35/38; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.42536; ---TCGTGAC---- ; cor=; Ncor= a 0 0 0 540.0 334.0 515.0 124.0 56.0 7460.0 404.0 0 0 0 0 c 0 0 0 492.0 7713.0 350.0 106.0 184.0 622.0 7292.0 0 0 0 0 g 0 0 0 702.0 580.0 7969.0 251.0 8602.0 367.0 647.0 0 0 0 0 t 0 0 0 7226.0 333.0 126.0 8479.0 118.0 511.0 617.0 0 0 0 0

MA0783.1_rc_shift6 (PKNOX2_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA0783.1_rc (PKNOX2_rc); m=36/38; ncol2=12; w=0; offset=4; strand=R; shift=6; score=0.422698; ------TGACAsCT ; cor=; Ncor= a 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 c 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 g 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 t 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0

MA0498.3_shift6 (MEIS1)
; oligos_7nt_test_vs_ctrl_m2 versus MA0498.3 (MEIS1); m=37/38; ncol2=5; w=0; offset=4; strand=D; shift=6; score=0.413093; ------TGACA--- ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 0.0 77159.0 0.0 77159.0 0 0 0 c 0 0 0 0 0 0 5575.0 1249.0 2903.0 77159.0 0.0 0 0 0 g 0 0 0 0 0 0 3174.0 77159.0 672.0 0.0 9263.0 0 0 0 t 0 0 0 0 0 0 77159.0 0.0 0.0 1155.0 3861.0 0 0 0

MA1108.3_shift2 (MXI1)
; oligos_7nt_test_vs_ctrl_m2 versus MA1108.3 (MXI1); m=38/38; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.410205; --CACATG------ ; cor=; Ncor= a 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 0 0 0 0 0 c 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 0 0 0 0 0 g 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 0 0 0 0 0 t 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift3 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwAAACTGTww ; Alignment reference a 0 0 0 2455 2281 6683 6199 6810 614 446 562 283 3077 2461 c 0 0 0 1169 1058 168 355 199 6562 173 111 127 1042 1485 g 0 0 0 1672 1546 163 201 173 162 115 6769 118 1521 1134 t 0 0 0 2298 2709 580 839 412 256 6860 152 7066 1954 2514

MA1580.1_rc_shift5 (ZBTB32_rc)
; oligos_7nt_test_vs_ctrl_m4 versus MA1580.1_rc (ZBTB32_rc); m=1/5; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.568261; -----wtACTGTAC ; cor=; Ncor= a 0 0 0 0 0 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 c 0 0 0 0 0 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 g 0 0 0 0 0 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 t 0 0 0 0 0 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0

MA1105.3_rc_shift5 (GRHL2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus MA1105.3_rc (GRHL2_rc); m=2/5; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.532711; -----AACCTGTT- ; cor=; Ncor= a 0 0 0 0 0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 0 c 0 0 0 0 0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 0 g 0 0 0 0 0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 0 t 0 0 0 0 0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 0

MA1647.3_shift0 (Prdm4)
; oligos_7nt_test_vs_ctrl_m4 versus MA1647.3 (Prdm4); m=3/5; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.452862; cCTtGAAACyg--- ; cor=; Ncor= a 220.0 33.0 21.0 202.0 30.0 1155.0 1140.0 1161.0 16.0 223.0 170.0 0 0 0 c 745.0 1098.0 40.0 37.0 4.0 12.0 10.0 6.0 1147.0 434.0 184.0 0 0 0 g 76.0 14.0 13.0 203.0 1141.0 7.0 27.0 9.0 8.0 39.0 715.0 0 0 0 t 140.0 36.0 1107.0 739.0 6.0 7.0 4.0 5.0 10.0 485.0 112.0 0 0 0

MA1509.1_shift1 (IRF6)
; oligos_7nt_test_vs_ctrl_m4 versus MA1509.1 (IRF6); m=4/5; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.418336; -ACCGAAACT---- ; cor=; Ncor= a 0 2652.0 67.0 0.0 48.0 2652.0 2314.0 2652.0 0.0 98.0 0 0 0 0 c 0 164.0 2652.0 2652.0 5.0 0.0 0.0 0.0 2652.0 368.0 0 0 0 0 g 0 648.0 62.0 22.0 2652.0 0.0 9.0 17.0 12.0 7.0 0 0 0 0 t 0 89.0 561.0 19.0 9.0 26.0 338.0 2.0 0.0 2284.0 0 0 0 0

MA0100.4_shift5 (MYB)
; oligos_7nt_test_vs_ctrl_m4 versus MA0100.4 (MYB); m=5/5; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.415955; -----CAACTG--- ; cor=; Ncor= a 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 0 0 0 c 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 0 0 0 g 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 0 0 0 t 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift5 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=10; shift=5; ncol=15; -----wtATGTAGww ; Alignment reference a 0 0 0 0 0 1449 1012 4118 51 373 18 4017 89 1337 1269 c 0 0 0 0 0 871 973 54 478 24 10 254 127 962 910 g 0 0 0 0 0 909 931 102 68 3899 15 21 3788 813 896 t 0 0 0 0 0 1094 1407 49 3726 27 4280 31 319 1211 1248

MA0610.2_shift8 (DMRT3)
; oligos_6nt_test_vs_ctrl_m1 versus MA0610.2 (DMRT3); m=1/5; ncol2=7; w=0; offset=3; strand=D; shift=8; score=0.500146; --------TGTATCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 106.0 0.0 0.0 999.0 202.0 0.0 618.0 c 0 0 0 0 0 0 0 0 22.0 0.0 0.0 0.0 0.0 999.0 188.0 g 0 0 0 0 0 0 0 0 22.0 999.0 0.0 0.0 104.0 0.0 97.0 t 0 0 0 0 0 0 0 0 851.0 0.0 999.0 0.0 694.0 0.0 97.0

MA1479.2_rc_shift7 (DMRTC2_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA1479.2_rc (DMRTC2_rc); m=2/5; ncol2=11; w=0; offset=2; strand=R; shift=7; score=0.46537; -------aTGTAkCA ; cor=; Ncor= a 0 0 0 0 0 0 0 873.0 73.0 0.0 5.0 873.0 147.0 0.0 873.0 c 0 0 0 0 0 0 0 80.0 40.0 2.0 0.0 7.0 1.0 873.0 134.0 g 0 0 0 0 0 0 0 165.0 0.0 873.0 6.0 80.0 267.0 12.0 90.0 t 0 0 0 0 0 0 0 242.0 873.0 0.0 873.0 100.0 459.0 0.0 48.0

MA1573.2_rc_shift0 (Thap11_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA1573.2_rc (Thap11_rc); m=3/5; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.456725; cTGGGAvtTGTAGT- ; cor=; Ncor= a 97.0 22.0 19.0 5.0 22.0 603.0 216.0 144.0 9.0 8.0 6.0 610.0 19.0 14.0 0 c 421.0 147.0 10.0 5.0 2.0 19.0 165.0 56.0 29.0 9.0 10.0 6.0 18.0 20.0 0 g 68.0 16.0 622.0 642.0 631.0 20.0 209.0 46.0 13.0 639.0 17.0 39.0 603.0 38.0 0 t 74.0 475.0 9.0 8.0 5.0 18.0 70.0 414.0 609.0 4.0 627.0 5.0 20.0 588.0 0

MA1478.2_rc_shift8 (DMRTA2_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA1478.2_rc (DMRTA2_rc); m=4/5; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.437748; --------TGTAwC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 261.0 3.0 13.0 1710.0 983.0 6.0 0 c 0 0 0 0 0 0 0 0 78.0 0.0 71.0 29.0 10.0 1710.0 0 g 0 0 0 0 0 0 0 0 23.0 1710.0 9.0 147.0 527.0 1.0 0 t 0 0 0 0 0 0 0 0 1710.0 0.0 1710.0 578.0 727.0 0.0 0

MA1121.2_rc_shift4 (TEAD2_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA1121.2_rc (TEAD2_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42293; ----GGAATGT---- ; cor=; Ncor= a 0 0 0 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 0 0 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 0 0 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 0 0 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwACTAAGAww ; Alignment reference a 0 2343 2054 7053 522 264 6759 6637 600 6842 2551 2461 c 0 1135 1108 161 6557 179 300 92 304 262 1318 1507 g 0 1471 1388 135 308 153 243 231 6137 175 1319 1224 t 0 2777 3176 377 339 7130 424 766 685 447 2538 2534

MA1963.2_shift4 (SATB1)
; oligos_6nt_test_vs_ctrl_m3 versus MA1963.2 (SATB1); m=1/3; ncol2=7; w=0; offset=3; strand=D; shift=4; score=0.488437; ----CTAATAA- ; cor=; Ncor= a 0 0 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 0 c 0 0 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 0 g 0 0 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 0 t 0 0 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0 0

MA0895.2_rc_shift0 (HMBOX1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus MA0895.2_rc (HMBOX1_rc); m=2/3; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.425873; kTAACTA----- ; cor=; Ncor= a 140.0 102.0 1231.0 1231.0 5.0 44.0 1231.0 0 0 0 0 0 c 130.0 17.0 8.0 5.0 1231.0 367.0 63.0 0 0 0 0 0 g 478.0 4.0 50.0 1.0 51.0 0.0 25.0 0 0 0 0 0 t 753.0 1231.0 237.0 26.0 2.0 1231.0 75.0 0 0 0 0 0

MA0442.3_shift3 (SOX10)
; oligos_6nt_test_vs_ctrl_m3 versus MA0442.3 (SOX10); m=3/3; ncol2=6; w=0; offset=2; strand=D; shift=3; score=0.411112; ---ACAAAG--- ; cor=; Ncor= a 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wtTTAAGAAGww ; Alignment reference a 1730 1487 221 298 5169 5716 548 5640 5714 557 1905 2146 c 1214 1224 232 256 421 38 196 188 47 192 1270 1166 g 1196 1148 222 347 307 190 5258 172 187 5147 1373 1237 t 2030 2311 5495 5269 273 226 168 170 222 274 1622 1621

MA0601.2_rc_shift1 (Arid3b_rc)
; oligos_7nt_test_vs_ctrl_m1 versus MA0601.2_rc (Arid3b_rc); m=1/1; ncol2=7; w=0; offset=1; strand=R; shift=1; score=0.432418; -ATTAAtw---- ; cor=; Ncor= a 0 911.0 89.0 0.0 1000.0 895.0 238.0 566.0 0 0 0 0 c 0 0.0 0.0 0.0 0.0 0.0 34.0 80.0 0 0 0 0 g 0 0.0 0.0 0.0 0.0 0.0 119.0 80.0 0 0 0 0 t 0 89.0 911.0 1000.0 0.0 104.0 609.0 273.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --asAGAGAGar ; Alignment reference a 0 0 3254 1954 7916 11 7890 19 7997 10 3447 2295 c 0 0 1515 2150 354 33 431 11 337 131 1538 1515 g 0 0 1957 3079 95 8316 25 8318 34 8234 1953 2927 t 0 0 1676 1219 37 42 56 54 34 27 1464 1665
MA1731.2_rc_shift3 (ZNF768_rc)				; oligos_6nt_test_vs_ctrl_m2 versus MA1731.2_rc (ZNF768_rc); m=1/3; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.766345; ---CAGAGAgGs ; cor=; Ncor= a 0 0 0 1.0 987.0 1.0 945.0 20.0 917.0 123.0 141.0 43.0 c 0 0 0 973.0 11.0 11.0 43.0 29.0 11.0 179.0 62.0 268.0 g 0 0 0 25.0 1.0 987.0 6.0 950.0 39.0 655.0 768.0 478.0 t 0 0 0 1.0 1.0 1.0 6.0 1.0 34.0 43.0 29.0 211.0
MA0508.4_rc_shift3 (PRDM1_rc)				; oligos_6nt_test_vs_ctrl_m2 versus MA0508.4_rc (PRDM1_rc); m=2/3; ncol2=7; w=0; offset=1; strand=R; shift=3; score=0.516452; ---GAGAAAG-- ; cor=; Ncor= a 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0
MA1982.2_shift0 (ZNF574)				; oligos_6nt_test_vs_ctrl_m2 versus MA1982.2 (ZNF574); m=3/3; ncol2=14; w=-2; offset=-2; strand=D; shift=0; score=0.510873; ksCTAGAGmGGC ; cor=; Ncor= a 97.0 33.0 68.0 43.0 997.0 1.0 983.0 58.0 302.0 19.0 58.0 121.0 c 26.0 409.0 877.0 231.0 1.0 4.0 8.0 12.0 512.0 15.0 118.0 802.0 g 618.0 540.0 54.0 19.0 1.0 994.0 8.0 930.0 129.0 965.0 689.0 12.0 t 260.0 19.0 1.0 707.0 1.0 1.0 1.0 1.0 58.0 1.0 136.0 65.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift1 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=1; ncol=13; -wmATGCTCATtw ; Alignment reference a 0 1630 1325 4022 173 271 194 241 170 4388 199 1086 1334 c 0 935 1371 254 71 214 4243 127 4243 164 180 1000 1048 g 0 901 979 192 158 4023 120 70 247 66 242 1202 871 t 0 1378 1169 376 4442 336 287 4406 184 226 4223 1556 1591
MA0787.1_shift1 (POU3F2)				; oligos_7nt_test_vs_ctrl_m5 versus MA0787.1 (POU3F2); m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=1; score=0.710208; -wTATGCwAATka ; cor=; Ncor= a 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 c 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 g 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 t 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0
MA0788.1_shift0 (POU3F3)				; oligos_7nt_test_vs_ctrl_m5 versus MA0788.1 (POU3F3); m=2/5; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.668631; wwTATGCwAATtw ; cor=; Ncor= a 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 c 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 g 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 t 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0
MA0786.2_shift1 (POU3F1)				; oligos_7nt_test_vs_ctrl_m5 versus MA0786.2 (POU3F1); m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.597241; -wTATGywAAT-- ; cor=; Ncor= a 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 0 0 c 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 0 0 g 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 0 0 t 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 0 0
MA0789.1_shift2 (POU3F4)				; oligos_7nt_test_vs_ctrl_m5 versus MA0789.1 (POU3F4); m=4/5; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.54222; --TATGCwAAT-- ; cor=; Ncor= a 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 c 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 g 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 t 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0
MA1549.2_rc_shift6 (POU6F1_rc)				; oligos_7nt_test_vs_ctrl_m5 versus MA1549.2_rc (POU6F1_rc); m=5/5; ncol2=7; w=0; offset=5; strand=R; shift=6; score=0.489507; ------CTCATTA ; cor=; Ncor= a 0 0 0 0 0 0 1855.0 411.0 615.0 6413.0 0.0 0.0 6413.0 c 0 0 0 0 0 0 6413.0 0.0 5799.0 298.0 0.0 255.0 10.0 g 0 0 0 0 0 0 851.0 96.0 206.0 0.0 0.0 179.0 273.0 t 0 0 0 0 0 0 314.0 6413.0 67.0 0.0 6413.0 6413.0 164.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=10; shift=6; ncol=16; ------ryATGTGCdt ; Alignment reference a 0 0 0 0 0 0 1622 1218 4687 102 176 159 208 87 1434 1234 c 0 0 0 0 0 0 1071 1533 137 576 73 273 55 5079 1165 1150 g 0 0 0 0 0 0 1414 1214 395 73 5022 108 4977 21 1363 1201 t 0 0 0 0 0 0 1224 1366 112 4580 60 4791 91 144 1369 1746
MA2325.1_rc_shift6 (EPAS1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA2325.1_rc (EPAS1_rc); m=1/16; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.67162; ------skACGTGCg- ; cor=; Ncor= a 0 0 0 0 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 c 0 0 0 0 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 g 0 0 0 0 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 t 0 0 0 0 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0
MA1560.2_shift6 (SOHLH2)				; oligos_6nt_test_vs_ctrl_m4 versus MA1560.2 (SOHLH2); m=2/16; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.570062; ------gCACGTGc-- ; cor=; Ncor= a 0 0 0 0 0 0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 0 0 c 0 0 0 0 0 0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 0 0 g 0 0 0 0 0 0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 0 0 t 0 0 0 0 0 0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 0 0
MA1108.3_rc_shift7 (MXI1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1108.3_rc (MXI1_rc); m=3/16; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.554053; -------CATGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 c 0 0 0 0 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 g 0 0 0 0 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 t 0 0 0 0 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0
MA0819.3_shift6 (CLOCK)				; oligos_6nt_test_vs_ctrl_m4 versus MA0819.3 (CLOCK); m=4/16; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.514584; ------aCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 2009.0 146.0 2009.0 0.0 244.0 7.0 5.0 0 0 0 c 0 0 0 0 0 0 584.0 2009.0 3.0 2009.0 11.0 87.0 1.0 0 0 0 g 0 0 0 0 0 0 383.0 0.0 52.0 4.0 2009.0 6.0 2009.0 0 0 0 t 0 0 0 0 0 0 89.0 0.0 0.0 302.0 0.0 2009.0 52.0 0 0 0
MA0692.2_rc_shift5 (TFEB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0692.2_rc (TFEB_rc); m=5/16; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.473218; -----rTCACGTG--- ; cor=; Ncor= a 0 0 0 0 0 2826.0 807.0 11.0 8715.0 5.0 1155.0 274.0 3.0 0 0 0 c 0 0 0 0 0 558.0 872.0 8715.0 150.0 8715.0 83.0 62.0 0.0 0 0 0 g 0 0 0 0 0 5889.0 2342.0 10.0 169.0 288.0 8715.0 286.0 8715.0 0 0 0 t 0 0 0 0 0 283.0 8715.0 9.0 454.0 2762.0 0.0 8715.0 17.0 0 0 0
MA1106.2_shift8 (HIF1A)				; oligos_6nt_test_vs_ctrl_m4 versus MA1106.2 (HIF1A); m=6/16; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.472247; --------ACGTGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 976.0 0.0 1.0 2.0 84.0 88.0 0 0 c 0 0 0 0 0 0 0 0 0.0 979.0 0.0 33.0 41.0 837.0 0 0 g 0 0 0 0 0 0 0 0 2.0 0.0 979.0 11.0 844.0 20.0 0 0 t 0 0 0 0 0 0 0 0 2.0 1.0 0.0 934.0 11.0 35.0 0 0
MA0004.1_shift7 (Arnt)				; oligos_6nt_test_vs_ctrl_m4 versus MA0004.1 (Arnt); m=7/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.438619; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0
MA1121.2_rc_shift5 (TEAD2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1121.2_rc (TEAD2_rc); m=8/16; ncol2=7; w=-1; offset=-1; strand=R; shift=5; score=0.433611; -----GGAATGT---- ; cor=; Ncor= a 0 0 0 0 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 0 0 0 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 0 0 0 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 0 0 0 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0
MA0058.4_rc_shift7 (MAX_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0058.4_rc (MAX_rc); m=9/16; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.433436; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.0 6876.0 19.0 229.0 38.0 0.0 0 0 0 c 0 0 0 0 0 0 0 6876.0 20.0 6876.0 7.0 87.0 0.0 0 0 0 g 0 0 0 0 0 0 0 27.0 159.0 39.0 6876.0 0.0 6876.0 0 0 0 t 0 0 0 0 0 0 0 0.0 69.0 329.0 0.0 6876.0 39.0 0 0 0
MA0738.2_shift10 (HIC2)				; oligos_6nt_test_vs_ctrl_m4 versus MA0738.2 (HIC2); m=10/16; ncol2=6; w=0; offset=4; strand=D; shift=10; score=0.431414; ----------rTGCCM ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 c 0 0 0 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 g 0 0 0 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0
MA0825.2_shift7 (MNT)				; oligos_6nt_test_vs_ctrl_m4 versus MA0825.2 (MNT); m=11/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.430336; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 27.0 681.0 0.0 15.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 681.0 0.0 681.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 7.0 681.0 15.0 681.0 0 0 0 t 0 0 0 0 0 0 0 5.0 21.0 16.0 0.0 681.0 25.0 0 0 0
MA0622.2_shift7 (Mlxip)				; oligos_6nt_test_vs_ctrl_m4 versus MA0622.2 (Mlxip); m=12/16; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.426619; -------CACGTG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 999.0 0.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 999.0 0.0 999.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 999.0 0.0 999.0 0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 999.0 0.0 0 0 0
MA0727.2_shift0 (NR3C2)				; oligos_6nt_test_vs_ctrl_m4 versus MA0727.2 (NR3C2); m=13/16; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.41847; rGwACAywrTGTwCy- ; cor=; Ncor= a 15033.0 57.0 17523.0 30042.0 0.0 33515.0 7347.0 17996.0 22920.0 401.0 0.0 4.0 13789.0 16.0 560.0 0 c 226.0 8.0 1377.0 15.0 49953.0 28.0 18273.0 4833.0 1933.0 996.0 9.0 23.0 7366.0 42687.0 25680.0 0 g 26931.0 55731.0 6650.0 13.0 5.0 1053.0 3144.0 8538.0 14022.0 22.0 58888.0 3.0 1346.0 9.0 582.0 0 t 535.0 60.0 13654.0 9.0 0.0 221.0 16489.0 11062.0 4023.0 43465.0 0.0 44513.0 18547.0 83.0 16504.0 0
MA0113.4_shift0 (NR3C1)				; oligos_6nt_test_vs_ctrl_m4 versus MA0113.4 (NR3C1); m=14/16; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.414127; rGwACAywrTGTwCy- ; cor=; Ncor= a 8885.0 40.0 8932.0 18207.0 0.0 18421.0 2470.0 7736.0 11413.0 81.0 0.0 8.0 8832.0 33.0 234.0 0 c 107.0 7.0 599.0 8.0 24481.0 18.0 9569.0 3656.0 964.0 565.0 11.0 9.0 3149.0 24380.0 14665.0 0 g 12768.0 27337.0 2854.0 9.0 14.0 698.0 1583.0 5589.0 7861.0 50.0 27160.0 50.0 648.0 5.0 188.0 0 t 225.0 38.0 10448.0 10.0 0.0 71.0 10711.0 5972.0 1822.0 23751.0 5.0 24434.0 10375.0 58.0 9821.0 0
MA2327.1_shift3 (PGR)				; oligos_6nt_test_vs_ctrl_m4 versus MA2327.1 (PGR); m=15/16; ncol2=9; w=-3; offset=-3; strand=D; shift=3; score=0.404481; ---ACAkwmTGT---- ; cor=; Ncor= a 0 0 0 29390.0 299.0 27485.0 5276.0 8275.0 8527.0 328.0 765.0 173.0 0 0 0 0 c 0 0 0 121.0 28612.0 363.0 6470.0 6654.0 9602.0 1695.0 185.0 190.0 0 0 0 0 g 0 0 0 189.0 185.0 1689.0 9598.0 6656.0 6465.0 364.0 28617.0 122.0 0 0 0 0 t 0 0 0 164.0 768.0 327.0 8520.0 8279.0 5270.0 27477.0 297.0 29379.0 0 0 0 0
MA1155.1_rc_shift0 (ZSCAN4_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1155.1_rc (ZSCAN4_rc); m=16/16; ncol2=15; w=-6; offset=-6; strand=R; shift=0; score=0.403908; tTTtCAGkGTGTGCa- ; cor=; Ncor= a 229.0 1.0 6.0 362.0 218.0 1699.0 2.0 8.0 73.0 2.0 0.0 2.0 0.0 0.0 1373.0 0 c 365.0 2.0 0.0 230.0 1873.0 75.0 0.0 320.0 0.0 2.0 0.0 0.0 1.0 1737.0 112.0 0 g 200.0 0.0 279.0 107.0 50.0 11.0 1684.0 374.0 1702.0 0.0 1665.0 0.0 1676.0 2.0 383.0 0 t 1000.0 1269.0 1225.0 1118.0 3.0 8.0 7.0 772.0 3.0 1281.0 0.0 1292.0 0.0 290.0 257.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwGAAAAGAww ; Alignment reference a 0 2224 2641 122 5769 5773 5627 5570 118 5985 2188 2510 c 0 1000 626 33 54 69 110 179 120 95 1069 1006 g 0 1373 1279 5897 132 103 109 108 5368 100 1147 1162 t 0 1755 1806 300 397 407 506 495 746 172 1948 1674
MA0029.2_shift2 (Mecom)				; oligos_7nt_test_vs_ctrl_m3 versus MA0029.2 (Mecom); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.660053; --AGAyAAGATA ; cor=; Ncor= a 0 0 20.0 0.0 27.0 1.0 27.0 26.0 0.0 27.0 0.0 24.0 c 0 0 1.0 1.0 0.0 10.0 0.0 0.0 0.0 0.0 3.0 1.0 g 0 0 2.0 25.0 0.0 0.0 0.0 1.0 27.0 0.0 0.0 0.0 t 0 0 4.0 1.0 0.0 16.0 0.0 0.0 0.0 0.0 24.0 2.0
MA1125.2_shift4 (ZNF384)				; oligos_7nt_test_vs_ctrl_m3 versus MA1125.2 (ZNF384); m=2/10; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.563802; ----AAAAAAaa ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0
MA0037.5_rc_shift2 (Gata3_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0037.5_rc (Gata3_rc); m=3/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.561037; --AGATAAGa-- ; cor=; Ncor= a 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 c 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 g 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 t 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0
MA1104.3_rc_shift2 (GATA6_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1104.3_rc (GATA6_rc); m=4/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.560641; --AGATAAGA-- ; cor=; Ncor= a 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 c 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 g 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 t 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0
MA1970.2_rc_shift2 (TRPS1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1970.2_rc (TRPS1_rc); m=5/10; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.559944; --AGATAAGA-- ; cor=; Ncor= a 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 c 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 g 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 t 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0
MA0606.3_shift0 (Nfat5)				; oligos_7nt_test_vs_ctrl_m3 versus MA0606.3 (Nfat5); m=6/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.48958; ATGGAAAA---- ; cor=; Ncor= a 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0
MA0036.4_rc_shift2 (GATA2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0036.4_rc (GATA2_rc); m=7/10; ncol2=7; w=0; offset=1; strand=R; shift=2; score=0.478139; --AGATAAG--- ; cor=; Ncor= a 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 c 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 g 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 t 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0
MA2101.1_shift3 (ZNF677)				; oligos_7nt_test_vs_ctrl_m3 versus MA2101.1 (ZNF677); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.45668; ---ratAAGAAC ; cor=; Ncor= a 0 0 0 515.0 1022.0 254.0 1498.0 1515.0 31.0 1499.0 1339.0 34.0 c 0 0 0 98.0 145.0 373.0 18.0 6.0 10.0 51.0 43.0 1447.0 g 0 0 0 811.0 271.0 125.0 49.0 22.0 1511.0 17.0 65.0 40.0 t 0 0 0 157.0 143.0 829.0 16.0 38.0 29.0 14.0 134.0 60.0
MA0624.3_shift1 (Nfatc1)				; oligos_7nt_test_vs_ctrl_m3 versus MA0624.3 (Nfatc1); m=9/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.437099; -TGGAAA----- ; cor=; Ncor= a 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 0 0 0 c 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 0 0 0 g 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 0 0 0 t 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0 0 0 0
MA0625.3_shift1 (NFATC3)				; oligos_7nt_test_vs_ctrl_m3 versus MA0625.3 (NFATC3); m=10/10; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.424449; -yGGAAa----- ; cor=; Ncor= a 0 289.0 0.0 0.0 5866.0 5866.0 5866.0 0 0 0 0 0 c 0 2313.0 0.0 0.0 261.0 0.0 1586.0 0 0 0 0 0 g 0 451.0 5866.0 5866.0 825.0 184.0 475.0 0 0 0 0 0 t 0 3553.0 0.0 0.0 8.0 0.0 1089.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=12; shift=2; ncol=14; --hwCATGACACwt ; Alignment reference a 0 0 1513 1586 389 4860 160 155 4701 290 4598 230 2320 1301 c 0 0 1362 1233 4403 227 129 279 245 4764 138 4587 1115 1145 g 0 0 1102 1068 298 137 214 4797 178 186 104 304 575 1312 t 0 0 1404 1494 291 157 4878 150 257 141 541 260 1371 1623
MA1633.2_shift5 (BACH1)				; oligos_7nt_test_vs_ctrl_m2 versus MA1633.2 (BACH1); m=1/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.591796; -----ATGACTCAt ; cor=; Ncor= a 0 0 0 0 0 32322.0 7.0 0.0 32322.0 551.0 534.0 2834.0 32322.0 4970.0 c 0 0 0 0 0 1482.0 25.0 13.0 38.0 32322.0 31.0 32322.0 39.0 8737.0 g 0 0 0 0 0 6187.0 25.0 32322.0 24.0 0.0 3303.0 52.0 50.0 2962.0 t 0 0 0 0 0 1048.0 32322.0 811.0 14.0 517.0 32322.0 18.0 17.0 32322.0
MA1128.2_shift5 (FOSL1::JUN)				; oligos_7nt_test_vs_ctrl_m2 versus MA1128.2 (FOSL1::JUN); m=2/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.57492; -----rTGACTCAt ; cor=; Ncor= a 0 0 0 0 0 602.0 1.0 3.0 994.0 26.0 33.0 159.0 984.0 57.0 c 0 0 0 0 0 89.0 2.0 2.0 2.0 826.0 2.0 835.0 4.0 245.0 g 0 0 0 0 0 283.0 1.0 957.0 2.0 51.0 140.0 2.0 9.0 119.0 t 0 0 0 0 0 26.0 996.0 38.0 3.0 97.0 826.0 4.0 4.0 579.0
MA1141.2_rc_shift5 (FOS::JUND_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA1141.2_rc (FOS::JUND_rc); m=3/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.570251; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 612.0 0.0 0.0 999.0 19.0 15.0 129.0 999.0 38.0 c 0 0 0 0 0 77.0 0.0 0.0 0.0 867.0 0.0 871.0 0.0 266.0 g 0 0 0 0 0 290.0 0.0 970.0 0.0 40.0 91.0 0.0 1.0 104.0 t 0 0 0 0 0 21.0 999.0 29.0 0.0 75.0 894.0 0.0 0.0 593.0
MA0655.1_shift5 (JDP2)				; oligos_7nt_test_vs_ctrl_m2 versus MA0655.1 (JDP2); m=4/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.567489; -----ATGASTCAT ; cor=; Ncor= a 0 0 0 0 0 1634.0 5.0 0.0 1634.0 14.0 6.0 22.0 1634.0 22.0 c 0 0 0 0 0 19.0 6.0 3.0 1.0 1200.0 0.0 1634.0 0.0 404.0 g 0 0 0 0 0 140.0 1.0 1634.0 2.0 434.0 6.0 3.0 0.0 5.0 t 0 0 0 0 0 8.0 1634.0 22.0 25.0 13.0 1634.0 9.0 7.0 1634.0
MA1101.3_shift4 (BACH2)				; oligos_7nt_test_vs_ctrl_m2 versus MA1101.3 (BACH2); m=5/38; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.566349; ----CATGAsTCAT ; cor=; Ncor= a 0 0 0 0 9369.0 62993.0 1.0 6.0 67846.0 50.0 3.0 115.0 68264.0 47.0 c 0 0 0 0 61580.0 260.0 7.0 0.0 1088.0 37438.0 20.0 68215.0 2.0 11634.0 g 0 0 0 0 6727.0 15304.0 1.0 68240.0 13.0 30785.0 856.0 0.0 11.0 2028.0 t 0 0 0 0 8116.0 0.0 68266.0 54.0 6.0 18.0 67975.0 3.0 0.0 63746.0
MA0490.3_shift5 (JUNB)				; oligos_7nt_test_vs_ctrl_m2 versus MA0490.3 (JUNB); m=6/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.564816; -----ATGACTCAT ; cor=; Ncor= a 0 0 0 0 0 56607.0 538.0 770.0 78101.0 4755.0 1999.0 5243.0 77675.0 3722.0 c 0 0 0 0 0 7817.0 654.0 550.0 523.0 59784.0 289.0 73199.0 588.0 8876.0 g 0 0 0 0 0 11566.0 322.0 74757.0 550.0 10519.0 913.0 617.0 900.0 7508.0 t 0 0 0 0 0 3866.0 78342.0 3779.0 682.0 4798.0 76655.0 797.0 693.0 59750.0
MA1130.2_rc_shift5 (FOSL2::JUN_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA1130.2_rc (FOSL2::JUN_rc); m=7/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.563172; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 589.0 1.0 1.0 998.0 58.0 29.0 158.0 998.0 55.0 c 0 0 0 0 0 93.0 1.0 1.0 1.0 698.0 1.0 840.0 1.0 282.0 g 0 0 0 0 0 299.0 0.0 979.0 1.0 141.0 123.0 1.0 1.0 121.0 t 0 0 0 0 0 19.0 998.0 20.0 1.0 103.0 847.0 1.0 1.0 542.0
MA0099.4_rc_shift5 (FOS::JUN_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0099.4_rc (FOS::JUN_rc); m=8/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.561229; -----rTGACTCAy ; cor=; Ncor= a 0 0 0 0 0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 c 0 0 0 0 0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 g 0 0 0 0 0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 t 0 0 0 0 0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0
MA0477.3_shift5 (FOSL1)				; oligos_7nt_test_vs_ctrl_m2 versus MA0477.3 (FOSL1); m=9/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.559518; -----aTGACTCAt ; cor=; Ncor= a 0 0 0 0 0 35056.0 260.0 515.0 56806.0 2557.0 1060.0 3133.0 56408.0 2716.0 c 0 0 0 0 0 6703.0 460.0 301.0 287.0 43918.0 163.0 53711.0 344.0 10399.0 g 0 0 0 0 0 13127.0 183.0 54619.0 286.0 8615.0 598.0 278.0 566.0 6533.0 t 0 0 0 0 0 2795.0 56778.0 2246.0 302.0 2591.0 55860.0 559.0 363.0 38033.0
MA0491.3_shift5 (JUND)				; oligos_7nt_test_vs_ctrl_m2 versus MA0491.3 (JUND); m=10/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.554374; -----aTGACTCAT ; cor=; Ncor= a 0 0 0 0 0 70166.0 644.0 1365.0 103797.0 4634.0 2053.0 4915.0 103420.0 2796.0 c 0 0 0 0 0 10173.0 757.0 873.0 650.0 76028.0 496.0 98628.0 751.0 12025.0 g 0 0 0 0 0 20586.0 443.0 99787.0 573.0 20633.0 1147.0 953.0 965.0 7908.0 t 0 0 0 0 0 5020.0 104101.0 3920.0 925.0 4650.0 102249.0 1449.0 809.0 83216.0
MA1137.2_shift5 (FOSL1::JUNB)				; oligos_7nt_test_vs_ctrl_m2 versus MA1137.2 (FOSL1::JUNB); m=11/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.552975; -----rTGAcTMAt ; cor=; Ncor= a 0 0 0 0 0 566.0 23.0 36.0 917.0 63.0 59.0 271.0 904.0 53.0 c 0 0 0 0 0 100.0 16.0 21.0 20.0 626.0 23.0 683.0 21.0 225.0 g 0 0 0 0 0 287.0 16.0 880.0 21.0 198.0 115.0 9.0 38.0 170.0 t 0 0 0 0 0 47.0 945.0 63.0 42.0 113.0 803.0 37.0 37.0 552.0
MA1144.2_shift5 (FOSL2::JUND)				; oligos_7nt_test_vs_ctrl_m2 versus MA1144.2 (FOSL2::JUND); m=12/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.546396; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 634.0 0.0 0.0 998.0 46.0 6.0 140.0 999.0 38.0 c 0 0 0 0 0 60.0 0.0 0.0 1.0 604.0 0.0 860.0 0.0 266.0 g 0 0 0 0 0 291.0 0.0 990.0 0.0 292.0 60.0 0.0 0.0 113.0 t 0 0 0 0 0 14.0 999.0 10.0 0.0 58.0 934.0 0.0 0.0 583.0
MA1134.2_rc_shift5 (FOS::JUNB_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA1134.2_rc (FOS::JUNB_rc); m=13/38; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.545302; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 658.0 1.0 1.0 996.0 25.0 4.0 131.0 998.0 36.0 c 0 0 0 0 0 51.0 1.0 1.0 3.0 618.0 1.0 868.0 1.0 267.0 g 0 0 0 0 0 284.0 1.0 971.0 1.0 309.0 30.0 1.0 1.0 105.0 t 0 0 0 0 0 7.0 998.0 27.0 1.0 48.0 965.0 1.0 1.0 593.0
MA1135.2_shift5 (FOSB::JUNB)				; oligos_7nt_test_vs_ctrl_m2 versus MA1135.2 (FOSB::JUNB); m=14/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.534646; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 598.0 1.0 1.0 997.0 34.0 2.0 191.0 998.0 37.0 c 0 0 0 0 0 61.0 0.0 0.0 1.0 596.0 1.0 808.0 0.0 259.0 g 0 0 0 0 0 321.0 1.0 980.0 1.0 309.0 39.0 1.0 1.0 126.0 t 0 0 0 0 0 20.0 998.0 19.0 1.0 61.0 958.0 1.0 1.0 578.0
MA1138.2_shift5 (FOSL2::JUNB)				; oligos_7nt_test_vs_ctrl_m2 versus MA1138.2 (FOSL2::JUNB); m=15/38; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.534449; -----rTGAsTCAy ; cor=; Ncor= a 0 0 0 0 0 621.0 0.0 0.0 999.0 54.0 1.0 168.0 999.0 35.0 c 0 0 0 0 0 53.0 0.0 0.0 0.0 568.0 0.0 831.0 0.0 251.0 g 0 0 0 0 0 314.0 0.0 985.0 0.0 292.0 26.0 0.0 0.0 112.0 t 0 0 0 0 0 13.0 999.0 14.0 0.0 85.0 973.0 0.0 0.0 602.0
MA1132.2_shift5 (JUN::JUNB)				; oligos_7nt_test_vs_ctrl_m2 versus MA1132.2 (JUN::JUNB); m=16/38; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.533656; -----aTGACkCA- ; cor=; Ncor= a 0 0 0 0 0 627.0 11.0 10.0 944.0 27.0 58.0 161.0 931.0 0 c 0 0 0 0 0 134.0 10.0 21.0 10.0 826.0 24.0 707.0 24.0 0 g 0 0 0 0 0 189.0 34.0 921.0 28.0 115.0 353.0 10.0 18.0 0 t 0 0 0 0 0 50.0 946.0 47.0 18.0 33.0 565.0 122.0 27.0 0
MA0841.2_shift5 (NFE2)				; oligos_7nt_test_vs_ctrl_m2 versus MA0841.2 (NFE2); m=17/38; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.524669; -----ATGACTCAT ; cor=; Ncor= a 0 0 0 0 0 18831.0 2.0 0.0 18831.0 37.0 0.0 1.0 18831.0 0.0 c 0 0 0 0 0 9.0 8.0 0.0 11.0 14360.0 20.0 18831.0 13.0 2689.0 g 0 0 0 0 0 1306.0 0.0 18831.0 0.0 4472.0 3.0 0.0 8.0 10.0 t 0 0 0 0 0 5.0 18831.0 2.0 4.0 17.0 18831.0 3.0 5.0 18831.0
MA0806.1_rc_shift6 (TBX4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0806.1_rc (TBX4_rc); m=18/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.505483; ------TcACACCT ; cor=; Ncor= a 0 0 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 c 0 0 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 g 0 0 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 t 0 0 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0
MA0489.3_shift6 (Jun)				; oligos_7nt_test_vs_ctrl_m2 versus MA0489.3 (Jun); m=19/38; ncol2=8; w=0; offset=4; strand=D; shift=6; score=0.500829; ------TGACTCAt ; cor=; Ncor= a 0 0 0 0 0 0 1166.0 968.0 89245.0 3860.0 3034.0 3691.0 89496.0 4975.0 c 0 0 0 0 0 0 716.0 1468.0 1493.0 71105.0 920.0 88215.0 1827.0 14637.0 g 0 0 0 0 0 0 718.0 88928.0 1717.0 14953.0 1009.0 1228.0 1147.0 13040.0 t 0 0 0 0 0 0 91503.0 2739.0 1648.0 4185.0 89140.0 969.0 1633.0 61451.0
MA0807.1_rc_shift6 (TBX5_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0807.1_rc (TBX5_rc); m=20/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.500756; ------TmACACCT ; cor=; Ncor= a 0 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 c 0 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 g 0 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 t 0 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0
MA1142.2_shift5 (FOSL1::JUND)				; oligos_7nt_test_vs_ctrl_m2 versus MA1142.2 (FOSL1::JUND); m=21/38; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.49993; -----rTGActmA- ; cor=; Ncor= a 0 0 0 0 0 551.0 30.0 22.0 864.0 49.0 98.0 270.0 912.0 0 c 0 0 0 0 0 127.0 23.0 61.0 12.0 581.0 45.0 641.0 40.0 0 g 0 0 0 0 0 282.0 34.0 777.0 82.0 191.0 187.0 25.0 17.0 0 t 0 0 0 0 0 40.0 913.0 140.0 41.0 180.0 669.0 64.0 31.0 0
MA0801.1_rc_shift6 (MGA_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0801.1_rc (MGA_rc); m=22/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.490164; ------TCACACCT ; cor=; Ncor= a 0 0 0 0 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 c 0 0 0 0 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 g 0 0 0 0 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 t 0 0 0 0 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0
MA0089.3_shift5 (MAFG::NFE2L1)				; oligos_7nt_test_vs_ctrl_m2 versus MA0089.3 (MAFG::NFE2L1); m=23/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.48817; -----ATGACTCAG ; cor=; Ncor= a 0 0 0 0 0 2582.0 12.0 17.0 3336.0 51.0 218.0 185.0 3171.0 57.0 c 0 0 0 0 0 57.0 5.0 7.0 4.0 2864.0 12.0 3049.0 9.0 18.0 g 0 0 0 0 0 706.0 2.0 3308.0 10.0 358.0 35.0 25.0 78.0 3018.0 t 0 0 0 0 0 11.0 3337.0 24.0 6.0 83.0 3091.0 97.0 98.0 263.0
MA0805.1_rc_shift6 (TBX1_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0805.1_rc (TBX1_rc); m=24/38; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.480915; ------TCACACCT ; cor=; Ncor= a 0 0 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 c 0 0 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 g 0 0 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 t 0 0 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0
MA0501.2_shift5 (MAF::NFE2)				; oligos_7nt_test_vs_ctrl_m2 versus MA0501.2 (MAF::NFE2); m=25/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.478987; -----rTGACTCAG ; cor=; Ncor= a 0 0 0 0 0 726.0 0.0 0.0 1090.0 16.0 110.0 80.0 978.0 8.0 c 0 0 0 0 0 26.0 0.0 0.0 0.0 871.0 1.0 937.0 0.0 4.0 g 0 0 0 0 0 334.0 0.0 1082.0 0.0 166.0 12.0 22.0 51.0 1041.0 t 0 0 0 0 0 4.0 1090.0 8.0 0.0 37.0 967.0 51.0 61.0 37.0
MA0150.3_shift5 (Nfe2l2)				; oligos_7nt_test_vs_ctrl_m2 versus MA0150.3 (Nfe2l2); m=26/38; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.478752; -----rTGACTCAG ; cor=; Ncor= a 0 0 0 0 0 488.0 0.0 0.0 726.0 20.0 84.0 65.0 577.0 10.0 c 0 0 0 0 0 28.0 0.0 0.0 0.0 533.0 20.0 549.0 3.0 11.0 g 0 0 0 0 0 205.0 0.0 711.0 0.0 118.0 16.0 46.0 90.0 698.0 t 0 0 0 0 0 5.0 726.0 15.0 0.0 55.0 606.0 66.0 56.0 7.0
MA0476.2_rc_shift5 (FOS_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0476.2_rc (FOS_rc); m=27/38; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.472495; -----ATGAsTCA- ; cor=; Ncor= a 0 0 0 0 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 c 0 0 0 0 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 g 0 0 0 0 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 t 0 0 0 0 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0
MA0775.2_shift5 (MEIS3)				; oligos_7nt_test_vs_ctrl_m2 versus MA0775.2 (MEIS3); m=28/38; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.461986; -----wTGACAg-- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 0 0
MA0093.4_rc_shift0 (USF1_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0093.4_rc (USF1_rc); m=29/38; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.460723; GTCACATGAC---- ; cor=; Ncor= a 9021.0 2023.0 480.0 54021.0 418.0 38065.0 549.0 499.0 38038.0 1636.0 0 0 0 0 c 3018.0 4679.0 53634.0 601.0 50076.0 3666.0 477.0 766.0 3912.0 43094.0 0 0 0 0 g 41450.0 3045.0 817.0 264.0 1387.0 13185.0 654.0 53536.0 9543.0 3030.0 0 0 0 0 t 1845.0 45587.0 403.0 448.0 3453.0 418.0 53654.0 533.0 3841.0 7574.0 0 0 0 0
MA1988.2_shift6 (Atf3)				; oligos_7nt_test_vs_ctrl_m2 versus MA1988.2 (Atf3); m=30/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.448885; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 581.0 1561.0 53318.0 2262.0 2338.0 5421.0 52046.0 0 c 0 0 0 0 0 0 669.0 443.0 356.0 45670.0 504.0 46610.0 673.0 0 g 0 0 0 0 0 0 357.0 48774.0 471.0 4498.0 1365.0 574.0 1086.0 0 t 0 0 0 0 0 0 53085.0 3914.0 547.0 2262.0 50485.0 2087.0 887.0 0
MA1928.2_rc_shift6 (BNC2_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA1928.2_rc (BNC2_rc); m=31/38; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.446151; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 79.0 106.0 5400.0 275.0 191.0 282.0 5363.0 0 c 0 0 0 0 0 0 56.0 112.0 80.0 4332.0 61.0 5184.0 96.0 0 g 0 0 0 0 0 0 54.0 5238.0 106.0 838.0 117.0 72.0 66.0 0 t 0 0 0 0 0 0 5483.0 216.0 86.0 227.0 5303.0 134.0 147.0 0
MA0835.3_shift6 (BATF3)				; oligos_7nt_test_vs_ctrl_m2 versus MA0835.3 (BATF3); m=32/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.444525; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 132.0 245.0 11670.0 408.0 267.0 1248.0 11529.0 0 c 0 0 0 0 0 0 59.0 62.0 92.0 10589.0 79.0 10347.0 84.0 0 g 0 0 0 0 0 0 37.0 10420.0 87.0 560.0 117.0 88.0 117.0 0 t 0 0 0 0 0 0 11737.0 1238.0 116.0 408.0 11502.0 282.0 235.0 0
MA0462.3_shift6 (BATF::JUN)				; oligos_7nt_test_vs_ctrl_m2 versus MA0462.3 (BATF::JUN); m=33/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.440161; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 367.0 834.0 37280.0 1399.0 755.0 3955.0 36854.0 0 c 0 0 0 0 0 0 275.0 400.0 204.0 31168.0 241.0 32770.0 318.0 0 g 0 0 0 0 0 0 182.0 33135.0 350.0 4188.0 539.0 522.0 424.0 0 t 0 0 0 0 0 0 37330.0 3785.0 320.0 1399.0 36619.0 907.0 558.0 0
MA1634.2_shift6 (BATF)				; oligos_7nt_test_vs_ctrl_m2 versus MA1634.2 (BATF); m=34/38; ncol2=7; w=0; offset=4; strand=D; shift=6; score=0.439926; ------TGACTCA- ; cor=; Ncor= a 0 0 0 0 0 0 483.0 1139.0 45946.0 2051.0 1130.0 4742.0 45316.0 0 c 0 0 0 0 0 0 355.0 570.0 250.0 37333.0 306.0 40279.0 431.0 0 g 0 0 0 0 0 0 283.0 40617.0 341.0 5573.0 836.0 711.0 507.0 0 t 0 0 0 0 0 0 45887.0 4682.0 471.0 2051.0 44736.0 1276.0 754.0 0
MA1995.2_shift3 (Npas4)				; oligos_7nt_test_vs_ctrl_m2 versus MA1995.2 (Npas4); m=35/38; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.42536; ---TCGTGAC---- ; cor=; Ncor= a 0 0 0 540.0 334.0 515.0 124.0 56.0 7460.0 404.0 0 0 0 0 c 0 0 0 492.0 7713.0 350.0 106.0 184.0 622.0 7292.0 0 0 0 0 g 0 0 0 702.0 580.0 7969.0 251.0 8602.0 367.0 647.0 0 0 0 0 t 0 0 0 7226.0 333.0 126.0 8479.0 118.0 511.0 617.0 0 0 0 0
MA0783.1_rc_shift6 (PKNOX2_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA0783.1_rc (PKNOX2_rc); m=36/38; ncol2=12; w=0; offset=4; strand=R; shift=6; score=0.422698; ------TGACAsCT ; cor=; Ncor= a 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 c 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 g 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 t 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0
MA0498.3_shift6 (MEIS1)				; oligos_7nt_test_vs_ctrl_m2 versus MA0498.3 (MEIS1); m=37/38; ncol2=5; w=0; offset=4; strand=D; shift=6; score=0.413093; ------TGACA--- ; cor=; Ncor= a 0 0 0 0 0 0 8690.0 0.0 77159.0 0.0 77159.0 0 0 0 c 0 0 0 0 0 0 5575.0 1249.0 2903.0 77159.0 0.0 0 0 0 g 0 0 0 0 0 0 3174.0 77159.0 672.0 0.0 9263.0 0 0 0 t 0 0 0 0 0 0 77159.0 0.0 0.0 1155.0 3861.0 0 0 0
MA1108.3_shift2 (MXI1)				; oligos_7nt_test_vs_ctrl_m2 versus MA1108.3 (MXI1); m=38/38; ncol2=6; w=0; offset=0; strand=D; shift=2; score=0.410205; --CACATG------ ; cor=; Ncor= a 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 0 0 0 0 0 c 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 0 0 0 0 0 g 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 0 0 0 0 0 t 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift3 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwAAACTGTww ; Alignment reference a 0 0 0 2455 2281 6683 6199 6810 614 446 562 283 3077 2461 c 0 0 0 1169 1058 168 355 199 6562 173 111 127 1042 1485 g 0 0 0 1672 1546 163 201 173 162 115 6769 118 1521 1134 t 0 0 0 2298 2709 580 839 412 256 6860 152 7066 1954 2514
MA1580.1_rc_shift5 (ZBTB32_rc)				; oligos_7nt_test_vs_ctrl_m4 versus MA1580.1_rc (ZBTB32_rc); m=1/5; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.568261; -----wtACTGTAC ; cor=; Ncor= a 0 0 0 0 0 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 c 0 0 0 0 0 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 g 0 0 0 0 0 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 t 0 0 0 0 0 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0
MA1105.3_rc_shift5 (GRHL2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus MA1105.3_rc (GRHL2_rc); m=2/5; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.532711; -----AACCTGTT- ; cor=; Ncor= a 0 0 0 0 0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 0 c 0 0 0 0 0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 0 g 0 0 0 0 0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 0 t 0 0 0 0 0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 0
MA1647.3_shift0 (Prdm4)				; oligos_7nt_test_vs_ctrl_m4 versus MA1647.3 (Prdm4); m=3/5; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.452862; cCTtGAAACyg--- ; cor=; Ncor= a 220.0 33.0 21.0 202.0 30.0 1155.0 1140.0 1161.0 16.0 223.0 170.0 0 0 0 c 745.0 1098.0 40.0 37.0 4.0 12.0 10.0 6.0 1147.0 434.0 184.0 0 0 0 g 76.0 14.0 13.0 203.0 1141.0 7.0 27.0 9.0 8.0 39.0 715.0 0 0 0 t 140.0 36.0 1107.0 739.0 6.0 7.0 4.0 5.0 10.0 485.0 112.0 0 0 0
MA1509.1_shift1 (IRF6)				; oligos_7nt_test_vs_ctrl_m4 versus MA1509.1 (IRF6); m=4/5; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.418336; -ACCGAAACT---- ; cor=; Ncor= a 0 2652.0 67.0 0.0 48.0 2652.0 2314.0 2652.0 0.0 98.0 0 0 0 0 c 0 164.0 2652.0 2652.0 5.0 0.0 0.0 0.0 2652.0 368.0 0 0 0 0 g 0 648.0 62.0 22.0 2652.0 0.0 9.0 17.0 12.0 7.0 0 0 0 0 t 0 89.0 561.0 19.0 9.0 26.0 338.0 2.0 0.0 2284.0 0 0 0 0
MA0100.4_shift5 (MYB)				; oligos_7nt_test_vs_ctrl_m4 versus MA0100.4 (MYB); m=5/5; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.415955; -----CAACTG--- ; cor=; Ncor= a 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 0 0 0 c 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 0 0 0 g 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 0 0 0 t 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=10; shift=5; ncol=15; -----wtATGTAGww ; Alignment reference a 0 0 0 0 0 1449 1012 4118 51 373 18 4017 89 1337 1269 c 0 0 0 0 0 871 973 54 478 24 10 254 127 962 910 g 0 0 0 0 0 909 931 102 68 3899 15 21 3788 813 896 t 0 0 0 0 0 1094 1407 49 3726 27 4280 31 319 1211 1248
MA0610.2_shift8 (DMRT3)				; oligos_6nt_test_vs_ctrl_m1 versus MA0610.2 (DMRT3); m=1/5; ncol2=7; w=0; offset=3; strand=D; shift=8; score=0.500146; --------TGTATCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 106.0 0.0 0.0 999.0 202.0 0.0 618.0 c 0 0 0 0 0 0 0 0 22.0 0.0 0.0 0.0 0.0 999.0 188.0 g 0 0 0 0 0 0 0 0 22.0 999.0 0.0 0.0 104.0 0.0 97.0 t 0 0 0 0 0 0 0 0 851.0 0.0 999.0 0.0 694.0 0.0 97.0
MA1479.2_rc_shift7 (DMRTC2_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA1479.2_rc (DMRTC2_rc); m=2/5; ncol2=11; w=0; offset=2; strand=R; shift=7; score=0.46537; -------aTGTAkCA ; cor=; Ncor= a 0 0 0 0 0 0 0 873.0 73.0 0.0 5.0 873.0 147.0 0.0 873.0 c 0 0 0 0 0 0 0 80.0 40.0 2.0 0.0 7.0 1.0 873.0 134.0 g 0 0 0 0 0 0 0 165.0 0.0 873.0 6.0 80.0 267.0 12.0 90.0 t 0 0 0 0 0 0 0 242.0 873.0 0.0 873.0 100.0 459.0 0.0 48.0
MA1573.2_rc_shift0 (Thap11_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA1573.2_rc (Thap11_rc); m=3/5; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.456725; cTGGGAvtTGTAGT- ; cor=; Ncor= a 97.0 22.0 19.0 5.0 22.0 603.0 216.0 144.0 9.0 8.0 6.0 610.0 19.0 14.0 0 c 421.0 147.0 10.0 5.0 2.0 19.0 165.0 56.0 29.0 9.0 10.0 6.0 18.0 20.0 0 g 68.0 16.0 622.0 642.0 631.0 20.0 209.0 46.0 13.0 639.0 17.0 39.0 603.0 38.0 0 t 74.0 475.0 9.0 8.0 5.0 18.0 70.0 414.0 609.0 4.0 627.0 5.0 20.0 588.0 0
MA1478.2_rc_shift8 (DMRTA2_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA1478.2_rc (DMRTA2_rc); m=4/5; ncol2=6; w=0; offset=3; strand=R; shift=8; score=0.437748; --------TGTAwC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 261.0 3.0 13.0 1710.0 983.0 6.0 0 c 0 0 0 0 0 0 0 0 78.0 0.0 71.0 29.0 10.0 1710.0 0 g 0 0 0 0 0 0 0 0 23.0 1710.0 9.0 147.0 527.0 1.0 0 t 0 0 0 0 0 0 0 0 1710.0 0.0 1710.0 578.0 727.0 0.0 0
MA1121.2_rc_shift4 (TEAD2_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA1121.2_rc (TEAD2_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42293; ----GGAATGT---- ; cor=; Ncor= a 0 0 0 0 18.0 24.0 510.0 524.0 9.0 11.0 14.0 0 0 0 0 c 0 0 0 0 3.0 10.0 9.0 6.0 11.0 14.0 70.0 0 0 0 0 g 0 0 0 0 513.0 500.0 8.0 10.0 5.0 478.0 17.0 0 0 0 0 t 0 0 0 0 8.0 8.0 15.0 2.0 517.0 39.0 441.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift1 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wwACTAAGAww ; Alignment reference a 0 2343 2054 7053 522 264 6759 6637 600 6842 2551 2461 c 0 1135 1108 161 6557 179 300 92 304 262 1318 1507 g 0 1471 1388 135 308 153 243 231 6137 175 1319 1224 t 0 2777 3176 377 339 7130 424 766 685 447 2538 2534
MA1963.2_shift4 (SATB1)				; oligos_6nt_test_vs_ctrl_m3 versus MA1963.2 (SATB1); m=1/3; ncol2=7; w=0; offset=3; strand=D; shift=4; score=0.488437; ----CTAATAA- ; cor=; Ncor= a 0 0 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 0 c 0 0 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 0 g 0 0 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 0 t 0 0 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0 0
MA0895.2_rc_shift0 (HMBOX1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus MA0895.2_rc (HMBOX1_rc); m=2/3; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.425873; kTAACTA----- ; cor=; Ncor= a 140.0 102.0 1231.0 1231.0 5.0 44.0 1231.0 0 0 0 0 0 c 130.0 17.0 8.0 5.0 1231.0 367.0 63.0 0 0 0 0 0 g 478.0 4.0 50.0 1.0 51.0 0.0 25.0 0 0 0 0 0 t 753.0 1231.0 237.0 26.0 2.0 1231.0 75.0 0 0 0 0 0
MA0442.3_shift3 (SOX10)				; oligos_6nt_test_vs_ctrl_m3 versus MA0442.3 (SOX10); m=3/3; ncol2=6; w=0; offset=2; strand=D; shift=3; score=0.411112; ---ACAAAG--- ; cor=; Ncor= a 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0