position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ChIP_WT1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 11879 Sum of sequence lengths 6782897 Min sequence length 0 Max sequence length 1000 Average sequence length 570 Possible positions 6782897 Oligonucleotide statistics: Total occurrences 6043826 Position interval parameters: Position interval 20 Number of windows 50 Total positions 6782897 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1664 31734 2 -24 [-479,-460] -469.5 1831 35085 3 -23 [-459,-440] -449.5 2044 38864 4 -22 [-439,-420] -429.5 2269 43296 5 -21 [-419,-400] -409.5 2494 47678 6 -20 [-399,-380] -389.5 2774 52903 7 -19 [-379,-360] -369.5 3075 58753 8 -18 [-359,-340] -349.5 3468 65554 9 -17 [-339,-320] -329.5 3890 74105 10 -16 [-319,-300] -309.5 4412 83160 11 -15 [-299,-280] -289.5 4960 94001 12 -14 [-279,-260] -269.5 5568 105804 13 -13 [-259,-240] -249.5 6228 118282 14 -12 [-239,-220] -229.5 7045 133216 15 -11 [-219,-200] -209.5 7984 150644 16 -10 [-199,-180] -189.5 9161 172110 17 -9 [-179,-160] -169.5 10530 197501 18 -8 [-159,-140] -149.5 11879 231264 19 -7 [-139,-120] -129.5 11879 237580 20 -6 [-119,-100] -109.5 11879 237580 21 -5 [-99,-80] -89.5 11879 237580 22 -4 [-79,-60] -69.5 11879 237580 23 -3 [-59,-40] -49.5 11879 237580 24 -2 [-39,-20] -29.5 11879 237580 25 -1 [-19,0] -9.5 11879 237580 26 0 [1,20] 10.5 11879 237580 27 1 [21,40] 30.5 11879 237580 28 2 [41,60] 50.5 11879 237580 29 3 [61,80] 70.5 11879 237580 30 4 [81,100] 90.5 11879 237580 31 5 [101,120] 110.5 11879 237580 32 6 [121,140] 130.5 11879 237580 33 7 [141,160] 150.5 11879 229124 34 8 [161,180] 170.5 10454 196151 35 9 [181,200] 190.5 9104 170920 36 10 [201,220] 210.5 7930 149711 37 11 [221,240] 230.5 7005 132420 38 12 [241,260] 250.5 6193 117634 39 13 [261,280] 270.5 5541 105229 40 14 [281,300] 290.5 4927 93465 41 15 [301,320] 310.5 4389 82631 42 16 [321,340] 330.5 3874 73683 43 17 [341,360] 350.5 3450 65159 44 18 [361,380] 370.5 3063 58452 45 19 [381,400] 390.5 2761 52620 46 20 [401,420] 410.5 2484 47454 47 21 [421,440] 430.5 2259 43063 48 22 [441,460] 450.5 2032 38621 49 23 [461,480] 470.5 1827 34920 50 24 [481,500] 490.5 1657 31566 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 1264005 | 725.0 | 49 | 0.0e+00 | 0 | 300 | 1 | 6133 | 6748 | 7348 | 8140 | 8943 | 9903 | 10929 | 12124 | 14028 | 15690 | 17868 | 20133 | 22730 | 25612 | 28909 | 33448 | 38168 | 44778 | 45688 | 44857 | 44816 | 44277 | 44114 | 44399 | 44213 | 44141 | 43978 | 43809 | 43209 | 44022 | 43747 | 44197 | 42708 | 36526 | 31495 | 27431 | 24033 | 21284 | 19090 | 16947 | 14668 | 12913 | 11522 | 10469 | 9396 | 8418 | 7498 | 6762 | 6197 | 5549 |
| t | t | 1265171 | 437.0 | 49 | 0.0e+00 | 0 | 300 | 2 | 5740 | 6338 | 6888 | 7656 | 8373 | 9443 | 10423 | 11703 | 13185 | 15038 | 17010 | 19296 | 21624 | 24381 | 27917 | 31602 | 36939 | 43224 | 44539 | 44358 | 44158 | 44197 | 44544 | 44231 | 44327 | 44574 | 44690 | 44414 | 44552 | 44165 | 45379 | 45025 | 44169 | 37400 | 32553 | 28598 | 25065 | 22223 | 19691 | 17875 | 15469 | 13734 | 12125 | 11003 | 9712 | 8771 | 7866 | 6988 | 6229 | 5767 |
| g | g | 1758785 | 254.8 | 49 | 1.3e-29 | 5.4e-29 | 28.27 | 3 | 8426 | 9230 | 10175 | 11228 | 12320 | 13780 | 15144 | 17132 | 19023 | 21364 | 24314 | 27517 | 30849 | 35132 | 39447 | 45674 | 52204 | 61313 | 62449 | 62238 | 61725 | 62275 | 61990 | 61764 | 61708 | 61314 | 61322 | 61443 | 61223 | 61847 | 60320 | 60907 | 58024 | 50213 | 44290 | 38556 | 34171 | 30377 | 27364 | 23835 | 21351 | 18982 | 16832 | 14929 | 13408 | 12002 | 10941 | 9834 | 8893 | 7986 |
| c | c | 1755865 | 68.7 | 49 | 3.3e-02 | 0.13 | 0.88 | 4 | 8513 | 9150 | 10144 | 11209 | 12276 | 13357 | 15309 | 16914 | 19277 | 21537 | 24451 | 27530 | 30730 | 34507 | 39272 | 44538 | 51131 | 60019 | 61690 | 61456 | 61584 | 61183 | 61205 | 61581 | 61734 | 61651 | 61241 | 61322 | 61956 | 60896 | 61395 | 61245 | 59573 | 50945 | 44300 | 38770 | 34569 | 30527 | 27184 | 24213 | 21410 | 19045 | 16735 | 15013 | 13645 | 12194 | 10939 | 9671 | 8882 | 8247 |
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