/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_cisBP_Homo_sapiens_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf
		file1	1	11	14847
	file2	6607 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
		file2		1		7		100.0001
		file2		2		9		100.0001
		file2		3		8		100.00002892
		file2		4		9		100.0001
		file2		5		10		100.0001
		file2		6		11		100.00004702
		file2		7		10		100.00006
		file2		8		10		100.00005411
		file2		9		10		100.000031
		file2		10		10		100.0001
		file2		11		9		100
		...	6597 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m1 M07717_2.00 oligos_6nt_mkv4_m1 ZNF441 0.867 0.667 11 12 10 13 0.7692 0.9091 0.8333 R -2
oligos_6nt_mkv4_m1 M07585_2.00 oligos_6nt_mkv4_m1 ZNF331 0.702 0.644 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_6nt_mkv4_m1 M11037_2.00 oligos_6nt_mkv4_m1 M11037_2.00 0.720 0.600 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv4_m1 M02698_2.00 oligos_6nt_mkv4_m1 M02698_2.00 0.720 0.600 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv4_m1 M08298_2.00 oligos_6nt_mkv4_m1 KLF7 0.708 0.590 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_6nt_mkv4_m1 M08296_2.00 oligos_6nt_mkv4_m1 SP4 0.760 0.557 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_6nt_mkv4_m1 M08323_2.00 oligos_6nt_mkv4_m1 KLF15 0.745 0.546 11 15 11 15 0.7333 1.0000 0.7333 R -1
oligos_6nt_mkv4_m1 M06160_2.00 oligos_6nt_mkv4_m1 M06160_2.00 0.704 0.516 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_6nt_mkv4_m1 M08879_2.00 oligos_6nt_mkv4_m1 KLF12 0.734 0.508 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv4_m1 M10300_2.00 oligos_6nt_mkv4_m1 SP1 0.704 0.503 11 13 10 14 0.7143 0.9091 0.7692 R -3
oligos_6nt_mkv4_m1 M07616_2.00 oligos_6nt_mkv4_m1 ZNF610 0.915 0.493 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_6nt_mkv4_m1 M01913_2.00 oligos_6nt_mkv4_m1 DNMT1 0.800 0.493 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_6nt_mkv4_m1 M08326_2.00 oligos_6nt_mkv4_m1 SP2 0.720 0.480 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_6nt_mkv4_m1 M08327_2.00 oligos_6nt_mkv4_m1 ZNF610 0.882 0.475 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_6nt_mkv4_m1 M09259_2.00 oligos_6nt_mkv4_m1 M09259_2.00 0.739 0.470 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv4_m1 M09257_2.00 oligos_6nt_mkv4_m1 MECP2 0.739 0.470 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv4_m1 M00339_2.00 oligos_6nt_mkv4_m1 PAX6 0.751 0.450 11 13 9 15 0.6000 0.8182 0.6923 D -4
oligos_6nt_mkv4_m1 M00224_2.00 oligos_6nt_mkv4_m1 KLF1 0.751 0.438 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_6nt_mkv4_m1 M01919_2.00 oligos_6nt_mkv4_m1 M01919_2.00 0.853 0.427 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_6nt_mkv4_m1 M08975_2.00 oligos_6nt_mkv4_m1 M08975_2.00 0.765 0.421 11 20 11 20 0.5500 1.0000 0.5500 R -7
oligos_6nt_mkv4_m1 M08873_2.00 oligos_6nt_mkv4_m1 SP4 0.765 0.421 11 20 11 20 0.5500 1.0000 0.5500 R -7
oligos_6nt_mkv4_m1 M08954_2.00 oligos_6nt_mkv4_m1 ZBTB14 0.762 0.410 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_6nt_mkv4_m1 M02541_2.00 oligos_6nt_mkv4_m1 M02541_2.00 0.701 0.409 11 8 7 12 0.5833 0.6364 0.8750 D -1 
 Host name	rsat
 Job started	2026-01-04.220244
 Job done	2026-01-04.220252
 Seconds	2.69
	user	2.7
	system	0.56
	cuser	3.41
;	csystem	0.81