/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf
		file1	1	17	4250
	file2	6607 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
		file2		1		7		100.0001
		file2		2		9		100.0001
		file2		3		8		100.00002892
		file2		4		9		100.0001
		file2		5		10		100.0001
		file2		6		11		100.00004702
		file2		7		10		100.00006
		file2		8		10		100.00005411
		file2		9		10		100.000031
		file2		10		10		100.0001
		file2		11		9		100
		...	6597 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m2 M08876_2.00 oligos_6nt_mkv4_m2 KLF3 0.746 0.667 17 19 17 19 0.8947 1.0000 0.8947 R -1
oligos_6nt_mkv4_m2 M08982_2.00 oligos_6nt_mkv4_m2 M08982_2.00 0.746 0.667 17 19 17 19 0.8947 1.0000 0.8947 R -1
oligos_6nt_mkv4_m2 M08347_2.00 oligos_6nt_mkv4_m2 ZNF543 0.863 0.609 17 12 12 17 0.7059 0.7059 1.0000 D 0
oligos_6nt_mkv4_m2 M08978_2.00 oligos_6nt_mkv4_m2 M08978_2.00 0.714 0.607 17 20 17 20 0.8500 1.0000 0.8500 R -1
oligos_6nt_mkv4_m2 M08920_2.00 oligos_6nt_mkv4_m2 SP3,SP6 0.714 0.607 17 20 17 20 0.8500 1.0000 0.8500 R -1
oligos_6nt_mkv4_m2 M08965_2.00 oligos_6nt_mkv4_m2 M08965_2.00 0.748 0.581 17 15 14 18 0.7778 0.8235 0.9333 R -1
oligos_6nt_mkv4_m2 M08299_2.00 oligos_6nt_mkv4_m2 KLF12 0.745 0.579 17 15 14 18 0.7778 0.8235 0.9333 R 3
oligos_6nt_mkv4_m2 M08871_2.00 oligos_6nt_mkv4_m2 KLF1 0.748 0.540 17 14 13 18 0.7222 0.7647 0.9286 R 4
oligos_6nt_mkv4_m2 M09008_2.00 oligos_6nt_mkv4_m2 M09008_2.00 0.734 0.530 17 14 13 18 0.7222 0.7647 0.9286 R 4
oligos_6nt_mkv4_m2 M07701_2.00 oligos_6nt_mkv4_m2 ZNF765 0.706 0.529 17 18 15 20 0.7500 0.8824 0.8333 D 2
oligos_6nt_mkv4_m2 M08879_2.00 oligos_6nt_mkv4_m2 KLF12 0.793 0.513 17 11 11 17 0.6471 0.6471 1.0000 R 3
oligos_6nt_mkv4_m2 M08293_2.00 oligos_6nt_mkv4_m2 KLF1 0.744 0.509 17 15 13 19 0.6842 0.7647 0.8667 R 4
oligos_6nt_mkv4_m2 M08868_2.00 oligos_6nt_mkv4_m2 KLF5 0.704 0.509 17 14 13 18 0.7222 0.7647 0.9286 R 4
oligos_6nt_mkv4_m2 M08298_2.00 oligos_6nt_mkv4_m2 KLF7 0.763 0.493 17 11 11 17 0.6471 0.6471 1.0000 R 4
oligos_6nt_mkv4_m2 M04464_2.00 oligos_6nt_mkv4_m2 KLF4 0.718 0.465 17 11 11 17 0.6471 0.6471 1.0000 R 4
oligos_6nt_mkv4_m2 M08021_2.00 oligos_6nt_mkv4_m2 M08021_2.00 0.704 0.455 17 11 11 17 0.6471 0.6471 1.0000 R 4
oligos_6nt_mkv4_m2 M04456_2.00 oligos_6nt_mkv4_m2 KLF2 0.702 0.454 17 11 11 17 0.6471 0.6471 1.0000 R 4
oligos_6nt_mkv4_m2 M04432_2.00 oligos_6nt_mkv4_m2 KLF12 0.700 0.453 17 11 11 17 0.6471 0.6471 1.0000 R 4
oligos_6nt_mkv4_m2 M08086_2.00 oligos_6nt_mkv4_m2 KLF5 0.757 0.445 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M08938_2.00 oligos_6nt_mkv4_m2 SP1 0.710 0.444 17 22 15 24 0.6250 0.8824 0.6818 R 2
oligos_6nt_mkv4_m2 M08246_2.00 oligos_6nt_mkv4_m2 KLF10 0.753 0.443 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M08243_2.00 oligos_6nt_mkv4_m2 KLF4 0.753 0.443 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M10294_2.00 oligos_6nt_mkv4_m2 SP1 0.743 0.437 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M00341_2.00 oligos_6nt_mkv4_m2 PAX6 0.736 0.433 17 10 10 17 0.5882 0.5882 1.0000 R 6
oligos_6nt_mkv4_m2 M08300_2.00 oligos_6nt_mkv4_m2 ZNF549 0.747 0.432 17 13 11 19 0.5789 0.6471 0.8462 R -2
oligos_6nt_mkv4_m2 M09502_2.00 oligos_6nt_mkv4_m2 KLF5 0.724 0.426 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M08894_2.00 oligos_6nt_mkv4_m2 KLF4 0.724 0.426 17 10 10 17 0.5882 0.5882 1.0000 R 4
oligos_6nt_mkv4_m2 M08326_2.00 oligos_6nt_mkv4_m2 SP2 0.790 0.418 17 9 9 17 0.5294 0.5294 1.0000 R 4
oligos_6nt_mkv4_m2 M08384_2.00 oligos_6nt_mkv4_m2 ZNF121 0.722 0.416 17 24 15 26 0.5769 0.8824 0.6250 D 2
oligos_6nt_mkv4_m2 M08290_2.00 oligos_6nt_mkv4_m2 MAZ 0.760 0.402 17 9 9 17 0.5294 0.5294 1.0000 R 5 
 Host name	rsat
 Job started	2026-01-04.220252
 Job done	2026-01-04.220300
 Seconds	2.69
	user	2.69
	system	0.66
	cuser	4.03
;	csystem	0.93