One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_cisBP_Homo_sapiens

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift2 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift2 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --ssgCtGGGCAGGGCass ; Alignment reference a 0 0 728 729 327 165 327 138 224 197 194 3071 106 207 178 223 2189 583 703 c 0 0 1243 1291 675 3547 452 237 351 272 3556 399 206 241 175 3523 786 1121 1180 g 0 0 1709 1600 2827 403 705 3757 3443 3644 388 561 3827 3677 3757 339 808 1936 1697 t 0 0 570 630 421 135 2766 118 232 137 112 219 111 125 140 165 467 610 670

M08876_2.00_rc_shift1 (KLF3_rc)
; oligos_6nt_mkv4_m2 versus M08876_2.00_rc (KLF3_rc); m=1/30; ncol2=19; w=-1; offset=-1; strand=R; shift=1; score=0.667258; -ggrgrdGGGyGGGGcygg ; cor=; Ncor= a 0 21.2851 22.6908 25.9036 24.498 32.7309 34.5382 3.41365 0.60241 0.401606 8.63454 0.803213 0.401606 18.4739 7.63052 8.43373 18.2731 13.0522 9.23695 c 0 18.8755 22.2892 20.4819 18.6747 24.6988 4.41767 0 0 0.803213 64.257 0.60241 2.61044 1.80723 1.00402 61.8474 38.1526 20.4819 24.2972 g 0 47.1888 46.1847 42.3695 49.5984 31.5261 35.9438 96.5863 99.1968 98.5944 0 98.1928 72.49 75.502 84.3373 14.8594 16.2651 49.5984 53.012 t 0 12.6506 8.83534 11.245 7.22892 11.0442 25.1004 0 0.200803 0.200803 27.1084 0.401606 24.498 4.21687 7.02811 14.8594 27.3092 16.8675 13.4538

M08982_2.00_rc_shift1 (M08982_2.00_rc)
; oligos_6nt_mkv4_m2 versus M08982_2.00_rc; m=2/30; ncol2=19; w=-1; offset=-1; strand=R; shift=1; score=0.667258; -ggrgrdGGGyGGGGcygg ; cor=; Ncor= a 0 21.2851 22.6908 25.9036 24.498 32.7309 34.5382 3.41365 0.60241 0.401606 8.63454 0.803213 0.401606 18.4739 7.63052 8.43373 18.2731 13.0522 9.23695 c 0 18.8755 22.2892 20.4819 18.6747 24.6988 4.41767 0 0 0.803213 64.257 0.60241 2.61044 1.80723 1.00402 61.8474 38.1526 20.4819 24.2972 g 0 47.1888 46.1847 42.3695 49.5984 31.5261 35.9438 96.5863 99.1968 98.5944 0 98.1928 72.49 75.502 84.3373 14.8594 16.2651 49.5984 53.012 t 0 12.6506 8.83534 11.245 7.22892 11.0442 25.1004 0 0.200803 0.200803 27.1084 0.401606 24.498 4.21687 7.02811 14.8594 27.3092 16.8675 13.4538

M08347_2.00_shift2 (ZNF543)
; oligos_6nt_mkv4_m2 versus M08347_2.00 (ZNF543); m=3/30; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.609222; --sssCWGGsCaGs----- ; cor=; Ncor= a 0 0 0.15625 8.28125 18.2812 0.15625 25.7812 0.15625 0.15625 20.1562 0.15625 62.0313 0.15625 0.15625 0 0 0 0 0 c 0 0 31.4063 48.9063 38.9063 76.4063 0.15625 0.15625 0.15625 28.2813 99.5313 17.0313 20.7812 43.2813 0 0 0 0 0 g 0 0 58.9063 42.6563 37.0313 23.2812 0.15625 99.5313 99.5313 44.5312 0.15625 8.28125 77.0312 41.4062 0 0 0 0 0 t 0 0 9.53125 0.15625 5.78125 0.15625 73.9062 0.15625 0.15625 7.03125 0.15625 12.6563 2.03125 15.1562 0 0 0 0 0

M08978_2.00_rc_shift1 (M08978_2.00_rc)
; oligos_6nt_mkv4_m2 versus M08978_2.00_rc; m=4/30; ncol2=20; w=-1; offset=-1; strand=R; shift=1; score=0.607044; -gggrggGGGcGGGGcsrg ; cor=; Ncor= a 0 20.7605 17.5602 22.8012 27.6205 17.1837 12.0783 13.8554 0.240964 0.963855 23.4488 4.44277 0.722892 18.9458 9.51807 11.4157 11.2048 25.753 20.0602 c 0 22.6431 21.8373 22.003 21.9277 19.9699 7.5 0.240964 1.0241 1.95783 62.756 3.43373 1.4759 3.49398 13.3133 55.3916 36.7169 13.2982 16.747 g 0 41.8599 47.4849 43.9006 38.9307 55.4669 63.8253 85.4819 97.741 96.6265 5.06024 89.0211 87.1687 71.9277 73.4639 23.9157 31.5512 44.9849 51.5813 t 0 14.7364 13.1175 11.2952 11.5211 7.37952 16.5964 0.421687 0.993976 0.451807 8.73494 3.10241 10.6325 5.63253 3.70482 9.27711 20.5271 15.9639 11.6114

M08920_2.00_rc_shift1 (SP3,SP6_rc)
; oligos_6nt_mkv4_m2 versus M08920_2.00_rc (SP3,SP6_rc); m=5/30; ncol2=20; w=-1; offset=-1; strand=R; shift=1; score=0.607044; -gggrggGGGcGGGGcsrg ; cor=; Ncor= a 0 20.7605 17.5602 22.8012 27.6205 17.1837 12.0783 13.8554 0.240964 0.963855 23.4488 4.44277 0.722892 18.9458 9.51807 11.4157 11.2048 25.753 20.0602 c 0 22.6431 21.8373 22.003 21.9277 19.9699 7.5 0.240964 1.0241 1.95783 62.756 3.43373 1.4759 3.49398 13.3133 55.3916 36.7169 13.2982 16.747 g 0 41.8599 47.4849 43.9006 38.9307 55.4669 63.8253 85.4819 97.741 96.6265 5.06024 89.0211 87.1687 71.9277 73.4639 23.9157 31.5512 44.9849 51.5813 t 0 14.7364 13.1175 11.2952 11.5211 7.37952 16.5964 0.421687 0.993976 0.451807 8.73494 3.10241 10.6325 5.63253 3.70482 9.27711 20.5271 15.9639 11.6114

M08965_2.00_rc_shift1 (M08965_2.00_rc)
; oligos_6nt_mkv4_m2 versus M08965_2.00_rc; m=6/30; ncol2=15; w=-1; offset=-1; strand=R; shift=1; score=0.581469; -ggggswGGGhGkGGc--- ; cor=; Ncor= a 0 24.2485 12.6253 19.8397 16.2325 15.8317 46.2926 4.40882 0.400802 1.002 26.2525 3.40681 8.61723 4.20842 5.81162 20.2405 0 0 0 c 0 11.022 9.01804 14.8297 17.8357 46.2926 2.20441 0 0.200401 0.801603 30.8617 1.002 3.00601 0.601202 3.80762 59.519 0 0 0 g 0 47.6954 66.1323 55.1102 54.3086 29.0581 17.0341 94.7896 99.1984 97.7956 0.200401 94.3888 60.9218 94.3888 85.3707 7.81563 0 0 0 t 0 17.0341 12.2244 10.2204 11.6232 8.81764 34.4689 0.801603 0.200401 0.400802 42.6854 1.2024 27.4549 0.801603 5.01002 12.4248 0 0 0

M08299_2.00_rc_shift5 (KLF12_rc)
; oligos_6nt_mkv4_m2 versus M08299_2.00_rc (KLF12_rc); m=7/30; ncol2=15; w=0; offset=3; strand=R; shift=5; score=0.579487; -----vgGGGCGkGGCcgg ; cor=; Ncor= a 0 0 0 0 0 25.6513 15.0301 13.2265 0 0 7.014 0 0.4008 8.016 2.6052 5.01 9.6192 20.2405 18.2365 c 0 0 0 0 0 31.4629 10.8216 0 0 0 78.5571 0 5.6112 0.4008 3.8076 77.7555 49.8998 20.4409 17.2345 g 0 0 0 0 0 32.6653 55.1102 86.7735 100 100 0.2004 100 63.3267 87.1743 87.3747 5.01 23.6473 39.479 55.3106 t 0 0 0 0 0 10.2204 19.0381 0 0 0 14.2285 0 30.6613 4.4088 6.2124 12.2244 16.8337 19.8397 9.2184

M08871_2.00_rc_shift6 (KLF1_rc)
; oligos_6nt_mkv4_m2 versus M08871_2.00_rc (KLF1_rc); m=8/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.540114; ------rGGGyGkGGCygg ; cor=; Ncor= a 0 0 0 0 0 0 33.9468 0.408998 0.204499 0 9.20245 1.43149 2.45399 3.88548 2.45399 6.13497 16.7689 14.3149 10.4294 c 0 0 0 0 0 0 3.27198 0.204499 0.408998 0 52.7607 0 1.02249 0.408998 2.24949 68.5072 45.8078 19.8364 20.2454 g 0 0 0 0 0 0 38.6503 98.9775 98.773 99.7955 0 97.7505 53.5787 90.3885 86.2986 16.7689 9.40695 47.2393 52.9652 t 0 0 0 0 0 0 24.1309 0.408998 0.613497 0.204499 38.0368 0.817996 42.9448 5.31697 8.99796 8.58896 28.0164 18.6094 16.3599

M09008_2.00_rc_shift6 (M09008_2.00_rc)
; oligos_6nt_mkv4_m2 versus M09008_2.00_rc; m=9/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.529958; ------dGGGyGkGGcygg ; cor=; Ncor= a 0 0 0 0 0 0 35.022 0.440529 0.440529 0.660793 11.0132 0.881057 2.42291 2.86344 1.98238 6.82819 17.8414 9.91189 4.62555 c 0 0 0 0 0 0 2.86344 0 0.440529 0 43.6123 0 0.881057 0.660793 1.76211 64.5374 40.0881 12.7753 17.1806 g 0 0 0 0 0 0 28.6344 98.4581 99.1189 99.1189 0.220264 98.4581 49.3392 91.1894 91.1894 15.859 13.4361 53.304 62.1145 t 0 0 0 0 0 0 33.4802 1.10132 0 0.220264 45.1542 0.660793 47.3568 5.28634 5.06608 12.7753 28.6344 24.0088 16.0793

M07701_2.00_shift4 (ZNF765)
; oligos_6nt_mkv4_m2 versus M07701_2.00 (ZNF765); m=10/30; ncol2=18; w=0; offset=2; strand=D; shift=4; score=0.529241; ----cCTsGGCyasGCmCt ; cor=; Ncor= a 0 0 0 0 11.7823 3.5228 3.5228 8.67586 7.30055 0.0859221 6.61317 23.8004 48.8956 18.9831 2.49174 13.8416 36.1675 3.5228 23.1183 c 0 0 0 0 56.7803 78.7902 8.32662 25.5132 0.0859221 0.0859221 84.6146 28.956 18.2929 25.5275 0.42961 73.6223 44.0834 85.6594 6.26665 g 0 0 0 0 19.6711 7.29046 11.4248 48.5325 89.0907 98.0238 2.48891 6.95459 24.4793 38.2218 96.3054 8.33161 16.9136 9.35713 14.8567 t 0 0 0 0 11.7663 10.3966 76.7258 17.2785 3.5228 1.80436 6.28327 40.289 8.33217 17.2675 0.773298 4.20452 2.83543 1.46067 55.7583

M08879_2.00_rc_shift5 (KLF12_rc)
; oligos_6nt_mkv4_m2 versus M08879_2.00_rc (KLF12_rc); m=11/30; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.513269; -----mgGGGCGGGGC--- ; cor=; Ncor= a 0 0 0 0 0 37.8319 24.7788 6.41593 0 0 9.0708 2.21239 0.442478 9.73451 1.32743 13.0531 0 0 0 c 0 0 0 0 0 34.292 3.09735 0 0.221239 0 87.8319 0.221239 0.884956 0 0.663717 80.0885 0 0 0 g 0 0 0 0 0 19.469 58.1858 93.1416 99.5575 100 0.221239 96.0177 79.2035 86.2832 96.4602 2.87611 0 0 0 t 0 0 0 0 0 8.40708 13.9381 0.442478 0.221239 0 2.87611 1.54867 19.469 3.9823 1.54867 3.9823 0 0 0

M08293_2.00_rc_shift6 (KLF1_rc)
; oligos_6nt_mkv4_m2 versus M08293_2.00_rc (KLF1_rc); m=12/30; ncol2=15; w=0; offset=4; strand=R; shift=6; score=0.508739; ------dGGGyGkGGccgg ; cor=; Ncor= a 0 0 0 0 0 0 27.2 1.4 0 0 7.6 0 0 8.4 4 6.4 15.4 16.6 15 c 0 0 0 0 0 0 8.4 0 0 0 51.8 0 1.6 0.2 5.8 64 46.2 23.4 17.6 g 0 0 0 0 0 0 27.6 98.6 100 100 0 100 51.6 86.2 80.8 14.2 16.8 43 45.4 t 0 0 0 0 0 0 36.8 0 0 0 40.6 0 46.8 5.2 9.4 15.4 21.6 17 22

M08868_2.00_rc_shift6 (KLF5_rc)
; oligos_6nt_mkv4_m2 versus M08868_2.00_rc (KLF5_rc); m=13/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.508636; ------wGGGtGkGGctgg ; cor=; Ncor= a 0 0 0 0 0 0 42.2 4.6 0.8 2.4 17.8 4.6 4 1.6 5 10.6 24.8 10.4 15.4 c 0 0 0 0 0 0 3.4 0.4 0.8 3.6 18.4 0.2 1 0 3 63.4 18.2 13.6 12.4 g 0 0 0 0 0 0 20.4 94.4 96.8 93 0.8 94.2 54.4 96.4 83 11 19.2 60.6 50.2 t 0 0 0 0 0 0 34 0.6 1.6 1 63 1 40.6 2 9 15 37.8 15.4 22

M08298_2.00_rc_shift6 (KLF7_rc)
; oligos_6nt_mkv4_m2 versus M08298_2.00_rc (KLF7_rc); m=14/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.493424; ------kGGGCGkgGcc-- ; cor=; Ncor= a 0 0 0 0 0 0 24.055 0 0 0 0 0 0 18.5567 2.0619 9.9656 12.0275 0 0 c 0 0 0 0 0 0 9.622 0 0 0 80.756 0 0 0 0 57.0447 46.7354 0 0 g 0 0 0 0 0 0 37.1134 100 100 100 0 100 67.6976 61.512 88.6598 17.5258 20.2749 0 0 t 0 0 0 0 0 0 29.2096 0 0 0 19.244 0 32.3024 19.9313 9.2784 15.4639 20.9622 0 0

M04464_2.00_rc_shift6 (KLF4_rc)
; oligos_6nt_mkv4_m2 versus M04464_2.00_rc (KLF4_rc); m=15/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.464516; ------tGGGyGkGGyg-- ; cor=; Ncor= a 0 0 0 0 0 0 23.9092 2.9539 0.0192901 0.273117 5.25245 3.70162 3.45759 3.94129 6.10943 9.84729 21.7136 0 0 c 0 0 0 0 0 0 15.0068 0.865475 0.270062 0 61.163 0.244269 4.50207 4.86478 3.12185 35.545 18.0164 0 0 g 0 0 0 0 0 0 22.9896 96.1806 98.6111 99.7269 0 96.0541 38.4297 84.3008 85.8006 22.8541 43.525 0 0 t 0 0 0 0 0 0 38.0943 0 1.09954 0 33.5846 0 53.6107 6.89314 4.96811 31.7536 16.7449 0 0

M08021_2.00_rc_shift6 (M08021_2.00_rc)
; oligos_6nt_mkv4_m2 versus M08021_2.00_rc; m=16/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.455414; ------wGGGyGkGGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 38.206 1.3289 0 0 10.6312 0 3.9867 9.63459 5.6478 9.6346 11.6279 0 0 c 0 0 0 0 0 0 2.6578 0 0 0 36.8771 0 0.996699 0 2.3256 56.1462 39.5349 0 0 g 0 0 0 0 0 0 19.6013 98.6711 100 100 0 100 49.5017 86.7109 87.3754 6.9767 21.2625 0 0 t 0 0 0 0 0 0 39.5349 0 0 0 52.4917 0 45.515 3.6545 4.6512 27.2425 27.5748 0 0

M04456_2.00_rc_shift6 (KLF2_rc)
; oligos_6nt_mkv4_m2 versus M04456_2.00_rc (KLF2_rc); m=17/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.454425; ------kGGGyGkGGys-- ; cor=; Ncor= a 0 0 0 0 0 0 20.752 5.78893 0.324763 0.0561167 0.578991 0 2.87466 1.08241 2.98084 4.88794 17.8682 0 0 c 0 0 0 0 0 0 17.7269 3.61168 2.24628 0.701459 59.5533 0 6.82561 10.9717 6.52945 37.46 26.4348 0 0 g 0 0 0 0 0 0 30.393 90.5994 95.724 99.2424 1.9024 100 42.1117 87.0111 83.6764 19.6371 34.4925 0 0 t 0 0 0 0 0 0 31.1281 0 1.70501 0 37.9653 0 48.188 0.934809 6.81334 38.0149 21.2044 0 0

M04432_2.00_rc_shift6 (KLF12_rc)
; oligos_6nt_mkv4_m2 versus M04432_2.00_rc (KLF12_rc); m=18/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.453222; ------wGGGCGTGGym-- ; cor=; Ncor= a 0 0 0 0 0 0 28.0783 6.56511 0 0.0447685 0.0161204 0.031998 0.255191 0.171081 0.687988 0.467733 32.6035 0 0 c 0 0 0 0 0 0 11.5691 0.041816 0 0 83.9387 0 1.24116 0.627297 0.216933 67.0312 36.1757 0 0 g 0 0 0 0 0 0 15.7603 93.3154 99.8275 99.9041 0.241805 99.968 7.90512 98.9799 96.8204 0.790089 17.2012 0 0 t 0 0 0 0 0 0 44.5923 0.0776583 0.172546 0.051164 15.8033 0 90.5985 0.221772 2.2747 31.711 14.0196 0 0

M08086_2.00_rc_shift6 (KLF5_rc)
; oligos_6nt_mkv4_m2 versus M08086_2.00_rc (KLF5_rc); m=19/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.445053; ------dGGGyGKGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 30.13 3.49717 0 0 24.8182 0 4.15105 11.7772 12.5707 19.0067 0 0 0 c 0 0 0 0 0 0 0 0 0 0 38.0721 0 0 0 0 55.6315 0 0 0 g 0 0 0 0 0 0 41.1065 96.5028 100 100 0 100 70.3034 88.2228 87.4293 14.863 0 0 0 t 0 0 0 0 0 0 28.7635 0 0 0 37.1097 0 25.5455 0 0 10.4989 0 0 0

M08938_2.00_rc_shift4 (SP1_rc)
; oligos_6nt_mkv4_m2 versus M08938_2.00_rc (SP1_rc); m=20/30; ncol2=22; w=0; offset=2; strand=R; shift=4; score=0.443938; ----rgGGGGCGGGGCckG ; cor=; Ncor= a 0 0 0 0 31.4629 19.2385 4.40882 5.81162 0 0.400802 3.20641 1.002 0.200401 6.61323 1.80361 6.01202 5.81162 14.4289 8.21643 c 0 0 0 0 20.6413 10.02 0.801603 0.801603 0.801603 0 95.3908 0 0.801603 0.200401 3.00601 86.7735 59.519 11.2224 17.6353 g 0 0 0 0 33.2665 66.9339 80.9619 93.3868 99.1984 99.5992 0.400802 98.7976 92.5852 91.5832 91.1824 1.40281 19.0381 46.2926 70.5411 t 0 0 0 0 14.6293 3.80762 13.8277 0 0 0 1.002 0.200401 6.41283 1.60321 4.00802 5.81162 15.6313 28.0561 3.60721

M08246_2.00_rc_shift6 (KLF10_rc)
; oligos_6nt_mkv4_m2 versus M08246_2.00_rc (KLF10_rc); m=21/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.442818; ------wGGGyGkGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 33.8557 2.0279 0.3227 0.3225 6.3696 0.5068 0.9675 6.0874 2.8403 5.8745 0 0 0 c 0 0 0 0 0 0 1.8688 0.2082 0.3001 0.8289 44.1938 0.3461 1.8427 1.0613 3.0023 66.0954 0 0 0 g 0 0 0 0 0 0 23.5703 97.6252 99.0777 98.4802 0.2537 98.3641 50.1723 89.9687 87.4843 6.4761 0 0 0 t 0 0 0 0 0 0 40.7052 0.1386 0.2997 0.3685 49.183 0.7831 47.0175 2.8825 6.673 21.554 0 0 0

M08243_2.00_rc_shift6 (KLF4_rc)
; oligos_6nt_mkv4_m2 versus M08243_2.00_rc (KLF4_rc); m=22/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.442817; ------wGGGyGkGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 33.8558 2.028 0.3227 0.3225 6.3696 0.5068 0.9675 6.0875 2.8404 5.8745 0 0 0 c 0 0 0 0 0 0 1.8688 0.2081 0.3 0.8289 44.1938 0.346 1.8427 1.0613 3.0022 66.0954 0 0 0 g 0 0 0 0 0 0 23.5703 97.6252 99.0776 98.4801 0.2536 98.364 50.1722 89.9686 87.4843 6.4761 0 0 0 t 0 0 0 0 0 0 40.7052 0.1386 0.2997 0.3685 49.183 0.7831 47.0176 2.8826 6.6731 21.5541 0 0 0

M10294_2.00_rc_shift6 (SP1_rc)
; oligos_6nt_mkv4_m2 versus M10294_2.00_rc (SP1_rc); m=23/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.436789; ------grGGCrkGgw--- ; cor=; Ncor= a 0 0 0 0 0 0 18.1818 27.2727 0 0 0 27.2727 0 9.09091 9.09091 27.2727 0 0 0 c 0 0 0 0 0 0 9.09091 9.09091 0 0 72.7273 0 9.09091 0 18.1818 18.1818 0 0 0 g 0 0 0 0 0 0 54.5455 54.5455 100 100 18.1818 54.5455 63.6364 72.7273 63.6364 0 0 0 0 t 0 0 0 0 0 0 18.1818 9.09091 0 0 9.09091 18.1818 27.2727 18.1818 9.09091 54.5455 0 0 0

M00341_2.00_rc_shift8 (PAX6_rc)
; oligos_6nt_mkv4_m2 versus M00341_2.00_rc (PAX6_rc); m=24/30; ncol2=10; w=0; offset=6; strand=R; shift=8; score=0.432885; --------GsCCGGGsAs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8.94651 4.8922 0.0242149 0.0477758 0.0698091 0.288319 4.55737 2.35712 99.8904 15.626 0 c 0 0 0 0 0 0 0 0 0.566241 49.7814 90.8504 70.7225 0.000919215 3.02319 0.776271 29.8875 0.0195276 33.4127 0 g 0 0 0 0 0 0 0 0 88.3463 38.384 5.80787 23.3072 99.2865 95.2316 93.3865 63.9078 0.0456877 46.0135 0 t 0 0 0 0 0 0 0 0 2.14098 6.94236 3.31751 5.92253 0.642756 1.4569 1.27985 3.84757 0.0443374 4.94776 0

M08300_2.00_rc_shift0 (ZNF549_rc)
; oligos_6nt_mkv4_m2 versus M08300_2.00_rc (ZNF549_rc); m=25/30; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.432403; ATGAAyyGGGCAG------ ; cor=; Ncor= a 100 3.2468 3.6797 76.6234 81.8182 2.1645 11.2554 19.0476 1.2987 5.6277 1.7316 93.0736 1.2987 0 0 0 0 0 0 c 0 1.7316 9.7403 6.71 1.0823 33.1169 28.7879 0 0 3.6797 97.8355 2.1645 0.6494 0 0 0 0 0 0 g 0 19.9134 76.8398 11.039 12.1212 2.381 1.9481 79.2208 98.0519 90.6926 0 3.4632 97.4026 0 0 0 0 0 0 t 0 75.1082 9.7403 5.6277 4.9784 62.3377 58.0087 1.7316 0.6494 0 0.4329 1.2987 0.6494 0 0 0 0 0 0

M09502_2.00_rc_shift6 (KLF5_rc)
; oligos_6nt_mkv4_m2 versus M09502_2.00_rc (KLF5_rc); m=26/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.425687; ------wGGGyGkGGC--- ; cor=; Ncor= a 0 0 0 0 0 0 36.4 11.6 0.1 0.1 8.1 1.5 4.6 5.5 6.2 7.7 0 0 0 c 0 0 0 0 0 0 5.5 0.1 0.1 0.1 42.8 0.1 2.3 0.1 6 75.6 0 0 0 g 0 0 0 0 0 0 22.4 88.2 99.7 99.7 0.1 97.2 40.5 92.2 69.4 1.9 0 0 0 t 0 0 0 0 0 0 35.7 0.1 0.1 0.1 49 1.2 52.6 2.2 18.4 14.8 0 0 0

M08894_2.00_rc_shift6 (KLF4_rc)
; oligos_6nt_mkv4_m2 versus M08894_2.00_rc (KLF4_rc); m=27/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.42567; ------wGGGyGkGGy--- ; cor=; Ncor= a 0 0 0 0 0 0 42 0.8 0.2 1.2 2.6 0.4 0.4 5 1.4 5.4 0 0 0 c 0 0 0 0 0 0 2 0 0 0.4 44.4 0.4 0.4 1.6 3.8 62.8 0 0 0 g 0 0 0 0 0 0 20.4 98.8 99.2 97.8 0.4 99.2 43.8 88.6 88.2 6.8 0 0 0 t 0 0 0 0 0 0 35.6 0.4 0.6 0.6 52.6 0 55.4 4.8 6.6 25 0 0 0

M08326_2.00_rc_shift6 (SP2_rc)
; oligos_6nt_mkv4_m2 versus M08326_2.00_rc (SP2_rc); m=28/30; ncol2=9; w=0; offset=4; strand=R; shift=6; score=0.418159; ------gGGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 0 0 11.4548 0.083612 0.083612 0.083612 0.083612 0.083612 0.083612 18.8127 21.4883 0 0 0 0 c 0 0 0 0 0 0 1.08696 0.083612 0.083612 0.083612 93.3946 0.083612 0.083612 0.083612 14.7993 0 0 0 0 g 0 0 0 0 0 0 64.9666 99.7492 99.7492 99.7492 0.083612 99.7492 97.408 74.3311 63.6288 0 0 0 0 t 0 0 0 0 0 0 22.4916 0.083612 0.083612 0.083612 6.43813 0.083612 2.42475 6.77258 0.083612 0 0 0 0

M08384_2.00_shift4 (ZNF121)
; oligos_6nt_mkv4_m2 versus M08384_2.00 (ZNF121); m=29/30; ncol2=24; w=0; offset=2; strand=D; shift=4; score=0.416497; ----vCkGGvCmrsryaGc ; cor=; Ncor= a 0 0 0 0 28.6074 4.44631 22.2315 1.42617 3.77517 25.5872 0.0838926 56.7953 41.3591 19.8826 27.2651 6.7953 64.5134 1.76174 9.47987 c 0 0 0 0 41.6946 81.6275 5.78859 0.755034 11.4933 37.3322 98.0705 35.9899 9.1443 28.2718 11.8289 50.0839 5.11745 4.11074 62.8356 g 0 0 0 0 27.6007 7.13087 45.0503 95.7215 82.6342 35.9899 1.76174 0.755034 41.3591 41.6946 45.0503 15.1846 6.7953 82.6342 7.46644 t 0 0 0 0 2.09732 6.7953 26.9295 2.09732 2.09732 1.0906 0.0838926 6.45973 8.13758 10.151 15.8557 27.9362 23.5738 11.4933 20.2181

M08290_2.00_rc_shift7 (MAZ_rc)
; oligos_6nt_mkv4_m2 versus M08290_2.00_rc (MAZ_rc); m=30/30; ncol2=9; w=0; offset=5; strand=R; shift=7; score=0.402422; -------GGGmGGGGs--- ; cor=; Ncor= a 0 0 0 0 0 0 0 11.0911 0.059952 0.059952 55.6954 0.059952 0.059952 0.059952 7.73381 7.2542 0 0 0 c 0 0 0 0 0 0 0 0.059952 0.059952 0.059952 35.3118 0.059952 0.059952 0.059952 0.059952 37.7098 0 0 0 g 0 0 0 0 0 0 0 88.789 99.8201 99.8201 0.059952 99.8201 99.8201 99.8201 92.1463 52.8177 0 0 0 t 0 0 0 0 0 0 0 0.059952 0.059952 0.059952 8.93285 0.059952 0.059952 0.059952 0.059952 2.21823 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift2 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --ssgCtGGGCAGGGCass ; Alignment reference a 0 0 728 729 327 165 327 138 224 197 194 3071 106 207 178 223 2189 583 703 c 0 0 1243 1291 675 3547 452 237 351 272 3556 399 206 241 175 3523 786 1121 1180 g 0 0 1709 1600 2827 403 705 3757 3443 3644 388 561 3827 3677 3757 339 808 1936 1697 t 0 0 570 630 421 135 2766 118 232 137 112 219 111 125 140 165 467 610 670
M08876_2.00_rc_shift1 (KLF3_rc)				; oligos_6nt_mkv4_m2 versus M08876_2.00_rc (KLF3_rc); m=1/30; ncol2=19; w=-1; offset=-1; strand=R; shift=1; score=0.667258; -ggrgrdGGGyGGGGcygg ; cor=; Ncor= a 0 21.2851 22.6908 25.9036 24.498 32.7309 34.5382 3.41365 0.60241 0.401606 8.63454 0.803213 0.401606 18.4739 7.63052 8.43373 18.2731 13.0522 9.23695 c 0 18.8755 22.2892 20.4819 18.6747 24.6988 4.41767 0 0 0.803213 64.257 0.60241 2.61044 1.80723 1.00402 61.8474 38.1526 20.4819 24.2972 g 0 47.1888 46.1847 42.3695 49.5984 31.5261 35.9438 96.5863 99.1968 98.5944 0 98.1928 72.49 75.502 84.3373 14.8594 16.2651 49.5984 53.012 t 0 12.6506 8.83534 11.245 7.22892 11.0442 25.1004 0 0.200803 0.200803 27.1084 0.401606 24.498 4.21687 7.02811 14.8594 27.3092 16.8675 13.4538
M08982_2.00_rc_shift1 (M08982_2.00_rc)				; oligos_6nt_mkv4_m2 versus M08982_2.00_rc; m=2/30; ncol2=19; w=-1; offset=-1; strand=R; shift=1; score=0.667258; -ggrgrdGGGyGGGGcygg ; cor=; Ncor= a 0 21.2851 22.6908 25.9036 24.498 32.7309 34.5382 3.41365 0.60241 0.401606 8.63454 0.803213 0.401606 18.4739 7.63052 8.43373 18.2731 13.0522 9.23695 c 0 18.8755 22.2892 20.4819 18.6747 24.6988 4.41767 0 0 0.803213 64.257 0.60241 2.61044 1.80723 1.00402 61.8474 38.1526 20.4819 24.2972 g 0 47.1888 46.1847 42.3695 49.5984 31.5261 35.9438 96.5863 99.1968 98.5944 0 98.1928 72.49 75.502 84.3373 14.8594 16.2651 49.5984 53.012 t 0 12.6506 8.83534 11.245 7.22892 11.0442 25.1004 0 0.200803 0.200803 27.1084 0.401606 24.498 4.21687 7.02811 14.8594 27.3092 16.8675 13.4538
M08347_2.00_shift2 (ZNF543)				; oligos_6nt_mkv4_m2 versus M08347_2.00 (ZNF543); m=3/30; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.609222; --sssCWGGsCaGs----- ; cor=; Ncor= a 0 0 0.15625 8.28125 18.2812 0.15625 25.7812 0.15625 0.15625 20.1562 0.15625 62.0313 0.15625 0.15625 0 0 0 0 0 c 0 0 31.4063 48.9063 38.9063 76.4063 0.15625 0.15625 0.15625 28.2813 99.5313 17.0313 20.7812 43.2813 0 0 0 0 0 g 0 0 58.9063 42.6563 37.0313 23.2812 0.15625 99.5313 99.5313 44.5312 0.15625 8.28125 77.0312 41.4062 0 0 0 0 0 t 0 0 9.53125 0.15625 5.78125 0.15625 73.9062 0.15625 0.15625 7.03125 0.15625 12.6563 2.03125 15.1562 0 0 0 0 0
M08978_2.00_rc_shift1 (M08978_2.00_rc)				; oligos_6nt_mkv4_m2 versus M08978_2.00_rc; m=4/30; ncol2=20; w=-1; offset=-1; strand=R; shift=1; score=0.607044; -gggrggGGGcGGGGcsrg ; cor=; Ncor= a 0 20.7605 17.5602 22.8012 27.6205 17.1837 12.0783 13.8554 0.240964 0.963855 23.4488 4.44277 0.722892 18.9458 9.51807 11.4157 11.2048 25.753 20.0602 c 0 22.6431 21.8373 22.003 21.9277 19.9699 7.5 0.240964 1.0241 1.95783 62.756 3.43373 1.4759 3.49398 13.3133 55.3916 36.7169 13.2982 16.747 g 0 41.8599 47.4849 43.9006 38.9307 55.4669 63.8253 85.4819 97.741 96.6265 5.06024 89.0211 87.1687 71.9277 73.4639 23.9157 31.5512 44.9849 51.5813 t 0 14.7364 13.1175 11.2952 11.5211 7.37952 16.5964 0.421687 0.993976 0.451807 8.73494 3.10241 10.6325 5.63253 3.70482 9.27711 20.5271 15.9639 11.6114
M08920_2.00_rc_shift1 (SP3,SP6_rc)				; oligos_6nt_mkv4_m2 versus M08920_2.00_rc (SP3,SP6_rc); m=5/30; ncol2=20; w=-1; offset=-1; strand=R; shift=1; score=0.607044; -gggrggGGGcGGGGcsrg ; cor=; Ncor= a 0 20.7605 17.5602 22.8012 27.6205 17.1837 12.0783 13.8554 0.240964 0.963855 23.4488 4.44277 0.722892 18.9458 9.51807 11.4157 11.2048 25.753 20.0602 c 0 22.6431 21.8373 22.003 21.9277 19.9699 7.5 0.240964 1.0241 1.95783 62.756 3.43373 1.4759 3.49398 13.3133 55.3916 36.7169 13.2982 16.747 g 0 41.8599 47.4849 43.9006 38.9307 55.4669 63.8253 85.4819 97.741 96.6265 5.06024 89.0211 87.1687 71.9277 73.4639 23.9157 31.5512 44.9849 51.5813 t 0 14.7364 13.1175 11.2952 11.5211 7.37952 16.5964 0.421687 0.993976 0.451807 8.73494 3.10241 10.6325 5.63253 3.70482 9.27711 20.5271 15.9639 11.6114
M08965_2.00_rc_shift1 (M08965_2.00_rc)				; oligos_6nt_mkv4_m2 versus M08965_2.00_rc; m=6/30; ncol2=15; w=-1; offset=-1; strand=R; shift=1; score=0.581469; -ggggswGGGhGkGGc--- ; cor=; Ncor= a 0 24.2485 12.6253 19.8397 16.2325 15.8317 46.2926 4.40882 0.400802 1.002 26.2525 3.40681 8.61723 4.20842 5.81162 20.2405 0 0 0 c 0 11.022 9.01804 14.8297 17.8357 46.2926 2.20441 0 0.200401 0.801603 30.8617 1.002 3.00601 0.601202 3.80762 59.519 0 0 0 g 0 47.6954 66.1323 55.1102 54.3086 29.0581 17.0341 94.7896 99.1984 97.7956 0.200401 94.3888 60.9218 94.3888 85.3707 7.81563 0 0 0 t 0 17.0341 12.2244 10.2204 11.6232 8.81764 34.4689 0.801603 0.200401 0.400802 42.6854 1.2024 27.4549 0.801603 5.01002 12.4248 0 0 0
M08299_2.00_rc_shift5 (KLF12_rc)				; oligos_6nt_mkv4_m2 versus M08299_2.00_rc (KLF12_rc); m=7/30; ncol2=15; w=0; offset=3; strand=R; shift=5; score=0.579487; -----vgGGGCGkGGCcgg ; cor=; Ncor= a 0 0 0 0 0 25.6513 15.0301 13.2265 0 0 7.014 0 0.4008 8.016 2.6052 5.01 9.6192 20.2405 18.2365 c 0 0 0 0 0 31.4629 10.8216 0 0 0 78.5571 0 5.6112 0.4008 3.8076 77.7555 49.8998 20.4409 17.2345 g 0 0 0 0 0 32.6653 55.1102 86.7735 100 100 0.2004 100 63.3267 87.1743 87.3747 5.01 23.6473 39.479 55.3106 t 0 0 0 0 0 10.2204 19.0381 0 0 0 14.2285 0 30.6613 4.4088 6.2124 12.2244 16.8337 19.8397 9.2184
M08871_2.00_rc_shift6 (KLF1_rc)				; oligos_6nt_mkv4_m2 versus M08871_2.00_rc (KLF1_rc); m=8/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.540114; ------rGGGyGkGGCygg ; cor=; Ncor= a 0 0 0 0 0 0 33.9468 0.408998 0.204499 0 9.20245 1.43149 2.45399 3.88548 2.45399 6.13497 16.7689 14.3149 10.4294 c 0 0 0 0 0 0 3.27198 0.204499 0.408998 0 52.7607 0 1.02249 0.408998 2.24949 68.5072 45.8078 19.8364 20.2454 g 0 0 0 0 0 0 38.6503 98.9775 98.773 99.7955 0 97.7505 53.5787 90.3885 86.2986 16.7689 9.40695 47.2393 52.9652 t 0 0 0 0 0 0 24.1309 0.408998 0.613497 0.204499 38.0368 0.817996 42.9448 5.31697 8.99796 8.58896 28.0164 18.6094 16.3599
M09008_2.00_rc_shift6 (M09008_2.00_rc)				; oligos_6nt_mkv4_m2 versus M09008_2.00_rc; m=9/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.529958; ------dGGGyGkGGcygg ; cor=; Ncor= a 0 0 0 0 0 0 35.022 0.440529 0.440529 0.660793 11.0132 0.881057 2.42291 2.86344 1.98238 6.82819 17.8414 9.91189 4.62555 c 0 0 0 0 0 0 2.86344 0 0.440529 0 43.6123 0 0.881057 0.660793 1.76211 64.5374 40.0881 12.7753 17.1806 g 0 0 0 0 0 0 28.6344 98.4581 99.1189 99.1189 0.220264 98.4581 49.3392 91.1894 91.1894 15.859 13.4361 53.304 62.1145 t 0 0 0 0 0 0 33.4802 1.10132 0 0.220264 45.1542 0.660793 47.3568 5.28634 5.06608 12.7753 28.6344 24.0088 16.0793
M07701_2.00_shift4 (ZNF765)				; oligos_6nt_mkv4_m2 versus M07701_2.00 (ZNF765); m=10/30; ncol2=18; w=0; offset=2; strand=D; shift=4; score=0.529241; ----cCTsGGCyasGCmCt ; cor=; Ncor= a 0 0 0 0 11.7823 3.5228 3.5228 8.67586 7.30055 0.0859221 6.61317 23.8004 48.8956 18.9831 2.49174 13.8416 36.1675 3.5228 23.1183 c 0 0 0 0 56.7803 78.7902 8.32662 25.5132 0.0859221 0.0859221 84.6146 28.956 18.2929 25.5275 0.42961 73.6223 44.0834 85.6594 6.26665 g 0 0 0 0 19.6711 7.29046 11.4248 48.5325 89.0907 98.0238 2.48891 6.95459 24.4793 38.2218 96.3054 8.33161 16.9136 9.35713 14.8567 t 0 0 0 0 11.7663 10.3966 76.7258 17.2785 3.5228 1.80436 6.28327 40.289 8.33217 17.2675 0.773298 4.20452 2.83543 1.46067 55.7583
M08879_2.00_rc_shift5 (KLF12_rc)				; oligos_6nt_mkv4_m2 versus M08879_2.00_rc (KLF12_rc); m=11/30; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.513269; -----mgGGGCGGGGC--- ; cor=; Ncor= a 0 0 0 0 0 37.8319 24.7788 6.41593 0 0 9.0708 2.21239 0.442478 9.73451 1.32743 13.0531 0 0 0 c 0 0 0 0 0 34.292 3.09735 0 0.221239 0 87.8319 0.221239 0.884956 0 0.663717 80.0885 0 0 0 g 0 0 0 0 0 19.469 58.1858 93.1416 99.5575 100 0.221239 96.0177 79.2035 86.2832 96.4602 2.87611 0 0 0 t 0 0 0 0 0 8.40708 13.9381 0.442478 0.221239 0 2.87611 1.54867 19.469 3.9823 1.54867 3.9823 0 0 0
M08293_2.00_rc_shift6 (KLF1_rc)				; oligos_6nt_mkv4_m2 versus M08293_2.00_rc (KLF1_rc); m=12/30; ncol2=15; w=0; offset=4; strand=R; shift=6; score=0.508739; ------dGGGyGkGGccgg ; cor=; Ncor= a 0 0 0 0 0 0 27.2 1.4 0 0 7.6 0 0 8.4 4 6.4 15.4 16.6 15 c 0 0 0 0 0 0 8.4 0 0 0 51.8 0 1.6 0.2 5.8 64 46.2 23.4 17.6 g 0 0 0 0 0 0 27.6 98.6 100 100 0 100 51.6 86.2 80.8 14.2 16.8 43 45.4 t 0 0 0 0 0 0 36.8 0 0 0 40.6 0 46.8 5.2 9.4 15.4 21.6 17 22
M08868_2.00_rc_shift6 (KLF5_rc)				; oligos_6nt_mkv4_m2 versus M08868_2.00_rc (KLF5_rc); m=13/30; ncol2=14; w=0; offset=4; strand=R; shift=6; score=0.508636; ------wGGGtGkGGctgg ; cor=; Ncor= a 0 0 0 0 0 0 42.2 4.6 0.8 2.4 17.8 4.6 4 1.6 5 10.6 24.8 10.4 15.4 c 0 0 0 0 0 0 3.4 0.4 0.8 3.6 18.4 0.2 1 0 3 63.4 18.2 13.6 12.4 g 0 0 0 0 0 0 20.4 94.4 96.8 93 0.8 94.2 54.4 96.4 83 11 19.2 60.6 50.2 t 0 0 0 0 0 0 34 0.6 1.6 1 63 1 40.6 2 9 15 37.8 15.4 22
M08298_2.00_rc_shift6 (KLF7_rc)				; oligos_6nt_mkv4_m2 versus M08298_2.00_rc (KLF7_rc); m=14/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.493424; ------kGGGCGkgGcc-- ; cor=; Ncor= a 0 0 0 0 0 0 24.055 0 0 0 0 0 0 18.5567 2.0619 9.9656 12.0275 0 0 c 0 0 0 0 0 0 9.622 0 0 0 80.756 0 0 0 0 57.0447 46.7354 0 0 g 0 0 0 0 0 0 37.1134 100 100 100 0 100 67.6976 61.512 88.6598 17.5258 20.2749 0 0 t 0 0 0 0 0 0 29.2096 0 0 0 19.244 0 32.3024 19.9313 9.2784 15.4639 20.9622 0 0
M04464_2.00_rc_shift6 (KLF4_rc)				; oligos_6nt_mkv4_m2 versus M04464_2.00_rc (KLF4_rc); m=15/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.464516; ------tGGGyGkGGyg-- ; cor=; Ncor= a 0 0 0 0 0 0 23.9092 2.9539 0.0192901 0.273117 5.25245 3.70162 3.45759 3.94129 6.10943 9.84729 21.7136 0 0 c 0 0 0 0 0 0 15.0068 0.865475 0.270062 0 61.163 0.244269 4.50207 4.86478 3.12185 35.545 18.0164 0 0 g 0 0 0 0 0 0 22.9896 96.1806 98.6111 99.7269 0 96.0541 38.4297 84.3008 85.8006 22.8541 43.525 0 0 t 0 0 0 0 0 0 38.0943 0 1.09954 0 33.5846 0 53.6107 6.89314 4.96811 31.7536 16.7449 0 0
M08021_2.00_rc_shift6 (M08021_2.00_rc)				; oligos_6nt_mkv4_m2 versus M08021_2.00_rc; m=16/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.455414; ------wGGGyGkGGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 38.206 1.3289 0 0 10.6312 0 3.9867 9.63459 5.6478 9.6346 11.6279 0 0 c 0 0 0 0 0 0 2.6578 0 0 0 36.8771 0 0.996699 0 2.3256 56.1462 39.5349 0 0 g 0 0 0 0 0 0 19.6013 98.6711 100 100 0 100 49.5017 86.7109 87.3754 6.9767 21.2625 0 0 t 0 0 0 0 0 0 39.5349 0 0 0 52.4917 0 45.515 3.6545 4.6512 27.2425 27.5748 0 0
M04456_2.00_rc_shift6 (KLF2_rc)				; oligos_6nt_mkv4_m2 versus M04456_2.00_rc (KLF2_rc); m=17/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.454425; ------kGGGyGkGGys-- ; cor=; Ncor= a 0 0 0 0 0 0 20.752 5.78893 0.324763 0.0561167 0.578991 0 2.87466 1.08241 2.98084 4.88794 17.8682 0 0 c 0 0 0 0 0 0 17.7269 3.61168 2.24628 0.701459 59.5533 0 6.82561 10.9717 6.52945 37.46 26.4348 0 0 g 0 0 0 0 0 0 30.393 90.5994 95.724 99.2424 1.9024 100 42.1117 87.0111 83.6764 19.6371 34.4925 0 0 t 0 0 0 0 0 0 31.1281 0 1.70501 0 37.9653 0 48.188 0.934809 6.81334 38.0149 21.2044 0 0
M04432_2.00_rc_shift6 (KLF12_rc)				; oligos_6nt_mkv4_m2 versus M04432_2.00_rc (KLF12_rc); m=18/30; ncol2=11; w=0; offset=4; strand=R; shift=6; score=0.453222; ------wGGGCGTGGym-- ; cor=; Ncor= a 0 0 0 0 0 0 28.0783 6.56511 0 0.0447685 0.0161204 0.031998 0.255191 0.171081 0.687988 0.467733 32.6035 0 0 c 0 0 0 0 0 0 11.5691 0.041816 0 0 83.9387 0 1.24116 0.627297 0.216933 67.0312 36.1757 0 0 g 0 0 0 0 0 0 15.7603 93.3154 99.8275 99.9041 0.241805 99.968 7.90512 98.9799 96.8204 0.790089 17.2012 0 0 t 0 0 0 0 0 0 44.5923 0.0776583 0.172546 0.051164 15.8033 0 90.5985 0.221772 2.2747 31.711 14.0196 0 0
M08086_2.00_rc_shift6 (KLF5_rc)				; oligos_6nt_mkv4_m2 versus M08086_2.00_rc (KLF5_rc); m=19/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.445053; ------dGGGyGKGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 30.13 3.49717 0 0 24.8182 0 4.15105 11.7772 12.5707 19.0067 0 0 0 c 0 0 0 0 0 0 0 0 0 0 38.0721 0 0 0 0 55.6315 0 0 0 g 0 0 0 0 0 0 41.1065 96.5028 100 100 0 100 70.3034 88.2228 87.4293 14.863 0 0 0 t 0 0 0 0 0 0 28.7635 0 0 0 37.1097 0 25.5455 0 0 10.4989 0 0 0
M08938_2.00_rc_shift4 (SP1_rc)				; oligos_6nt_mkv4_m2 versus M08938_2.00_rc (SP1_rc); m=20/30; ncol2=22; w=0; offset=2; strand=R; shift=4; score=0.443938; ----rgGGGGCGGGGCckG ; cor=; Ncor= a 0 0 0 0 31.4629 19.2385 4.40882 5.81162 0 0.400802 3.20641 1.002 0.200401 6.61323 1.80361 6.01202 5.81162 14.4289 8.21643 c 0 0 0 0 20.6413 10.02 0.801603 0.801603 0.801603 0 95.3908 0 0.801603 0.200401 3.00601 86.7735 59.519 11.2224 17.6353 g 0 0 0 0 33.2665 66.9339 80.9619 93.3868 99.1984 99.5992 0.400802 98.7976 92.5852 91.5832 91.1824 1.40281 19.0381 46.2926 70.5411 t 0 0 0 0 14.6293 3.80762 13.8277 0 0 0 1.002 0.200401 6.41283 1.60321 4.00802 5.81162 15.6313 28.0561 3.60721
M08246_2.00_rc_shift6 (KLF10_rc)				; oligos_6nt_mkv4_m2 versus M08246_2.00_rc (KLF10_rc); m=21/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.442818; ------wGGGyGkGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 33.8557 2.0279 0.3227 0.3225 6.3696 0.5068 0.9675 6.0874 2.8403 5.8745 0 0 0 c 0 0 0 0 0 0 1.8688 0.2082 0.3001 0.8289 44.1938 0.3461 1.8427 1.0613 3.0023 66.0954 0 0 0 g 0 0 0 0 0 0 23.5703 97.6252 99.0777 98.4802 0.2537 98.3641 50.1723 89.9687 87.4843 6.4761 0 0 0 t 0 0 0 0 0 0 40.7052 0.1386 0.2997 0.3685 49.183 0.7831 47.0175 2.8825 6.673 21.554 0 0 0
M08243_2.00_rc_shift6 (KLF4_rc)				; oligos_6nt_mkv4_m2 versus M08243_2.00_rc (KLF4_rc); m=22/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.442817; ------wGGGyGkGGc--- ; cor=; Ncor= a 0 0 0 0 0 0 33.8558 2.028 0.3227 0.3225 6.3696 0.5068 0.9675 6.0875 2.8404 5.8745 0 0 0 c 0 0 0 0 0 0 1.8688 0.2081 0.3 0.8289 44.1938 0.346 1.8427 1.0613 3.0022 66.0954 0 0 0 g 0 0 0 0 0 0 23.5703 97.6252 99.0776 98.4801 0.2536 98.364 50.1722 89.9686 87.4843 6.4761 0 0 0 t 0 0 0 0 0 0 40.7052 0.1386 0.2997 0.3685 49.183 0.7831 47.0176 2.8826 6.6731 21.5541 0 0 0
M10294_2.00_rc_shift6 (SP1_rc)				; oligos_6nt_mkv4_m2 versus M10294_2.00_rc (SP1_rc); m=23/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.436789; ------grGGCrkGgw--- ; cor=; Ncor= a 0 0 0 0 0 0 18.1818 27.2727 0 0 0 27.2727 0 9.09091 9.09091 27.2727 0 0 0 c 0 0 0 0 0 0 9.09091 9.09091 0 0 72.7273 0 9.09091 0 18.1818 18.1818 0 0 0 g 0 0 0 0 0 0 54.5455 54.5455 100 100 18.1818 54.5455 63.6364 72.7273 63.6364 0 0 0 0 t 0 0 0 0 0 0 18.1818 9.09091 0 0 9.09091 18.1818 27.2727 18.1818 9.09091 54.5455 0 0 0
M00341_2.00_rc_shift8 (PAX6_rc)				; oligos_6nt_mkv4_m2 versus M00341_2.00_rc (PAX6_rc); m=24/30; ncol2=10; w=0; offset=6; strand=R; shift=8; score=0.432885; --------GsCCGGGsAs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8.94651 4.8922 0.0242149 0.0477758 0.0698091 0.288319 4.55737 2.35712 99.8904 15.626 0 c 0 0 0 0 0 0 0 0 0.566241 49.7814 90.8504 70.7225 0.000919215 3.02319 0.776271 29.8875 0.0195276 33.4127 0 g 0 0 0 0 0 0 0 0 88.3463 38.384 5.80787 23.3072 99.2865 95.2316 93.3865 63.9078 0.0456877 46.0135 0 t 0 0 0 0 0 0 0 0 2.14098 6.94236 3.31751 5.92253 0.642756 1.4569 1.27985 3.84757 0.0443374 4.94776 0
M08300_2.00_rc_shift0 (ZNF549_rc)				; oligos_6nt_mkv4_m2 versus M08300_2.00_rc (ZNF549_rc); m=25/30; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.432403; ATGAAyyGGGCAG------ ; cor=; Ncor= a 100 3.2468 3.6797 76.6234 81.8182 2.1645 11.2554 19.0476 1.2987 5.6277 1.7316 93.0736 1.2987 0 0 0 0 0 0 c 0 1.7316 9.7403 6.71 1.0823 33.1169 28.7879 0 0 3.6797 97.8355 2.1645 0.6494 0 0 0 0 0 0 g 0 19.9134 76.8398 11.039 12.1212 2.381 1.9481 79.2208 98.0519 90.6926 0 3.4632 97.4026 0 0 0 0 0 0 t 0 75.1082 9.7403 5.6277 4.9784 62.3377 58.0087 1.7316 0.6494 0 0.4329 1.2987 0.6494 0 0 0 0 0 0
M09502_2.00_rc_shift6 (KLF5_rc)				; oligos_6nt_mkv4_m2 versus M09502_2.00_rc (KLF5_rc); m=26/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.425687; ------wGGGyGkGGC--- ; cor=; Ncor= a 0 0 0 0 0 0 36.4 11.6 0.1 0.1 8.1 1.5 4.6 5.5 6.2 7.7 0 0 0 c 0 0 0 0 0 0 5.5 0.1 0.1 0.1 42.8 0.1 2.3 0.1 6 75.6 0 0 0 g 0 0 0 0 0 0 22.4 88.2 99.7 99.7 0.1 97.2 40.5 92.2 69.4 1.9 0 0 0 t 0 0 0 0 0 0 35.7 0.1 0.1 0.1 49 1.2 52.6 2.2 18.4 14.8 0 0 0
M08894_2.00_rc_shift6 (KLF4_rc)				; oligos_6nt_mkv4_m2 versus M08894_2.00_rc (KLF4_rc); m=27/30; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.42567; ------wGGGyGkGGy--- ; cor=; Ncor= a 0 0 0 0 0 0 42 0.8 0.2 1.2 2.6 0.4 0.4 5 1.4 5.4 0 0 0 c 0 0 0 0 0 0 2 0 0 0.4 44.4 0.4 0.4 1.6 3.8 62.8 0 0 0 g 0 0 0 0 0 0 20.4 98.8 99.2 97.8 0.4 99.2 43.8 88.6 88.2 6.8 0 0 0 t 0 0 0 0 0 0 35.6 0.4 0.6 0.6 52.6 0 55.4 4.8 6.6 25 0 0 0
M08326_2.00_rc_shift6 (SP2_rc)				; oligos_6nt_mkv4_m2 versus M08326_2.00_rc (SP2_rc); m=28/30; ncol2=9; w=0; offset=4; strand=R; shift=6; score=0.418159; ------gGGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 0 0 11.4548 0.083612 0.083612 0.083612 0.083612 0.083612 0.083612 18.8127 21.4883 0 0 0 0 c 0 0 0 0 0 0 1.08696 0.083612 0.083612 0.083612 93.3946 0.083612 0.083612 0.083612 14.7993 0 0 0 0 g 0 0 0 0 0 0 64.9666 99.7492 99.7492 99.7492 0.083612 99.7492 97.408 74.3311 63.6288 0 0 0 0 t 0 0 0 0 0 0 22.4916 0.083612 0.083612 0.083612 6.43813 0.083612 2.42475 6.77258 0.083612 0 0 0 0
M08384_2.00_shift4 (ZNF121)				; oligos_6nt_mkv4_m2 versus M08384_2.00 (ZNF121); m=29/30; ncol2=24; w=0; offset=2; strand=D; shift=4; score=0.416497; ----vCkGGvCmrsryaGc ; cor=; Ncor= a 0 0 0 0 28.6074 4.44631 22.2315 1.42617 3.77517 25.5872 0.0838926 56.7953 41.3591 19.8826 27.2651 6.7953 64.5134 1.76174 9.47987 c 0 0 0 0 41.6946 81.6275 5.78859 0.755034 11.4933 37.3322 98.0705 35.9899 9.1443 28.2718 11.8289 50.0839 5.11745 4.11074 62.8356 g 0 0 0 0 27.6007 7.13087 45.0503 95.7215 82.6342 35.9899 1.76174 0.755034 41.3591 41.6946 45.0503 15.1846 6.7953 82.6342 7.46644 t 0 0 0 0 2.09732 6.7953 26.9295 2.09732 2.09732 1.0906 0.0838926 6.45973 8.13758 10.151 15.8557 27.9362 23.5738 11.4933 20.2181
M08290_2.00_rc_shift7 (MAZ_rc)				; oligos_6nt_mkv4_m2 versus M08290_2.00_rc (MAZ_rc); m=30/30; ncol2=9; w=0; offset=5; strand=R; shift=7; score=0.402422; -------GGGmGGGGs--- ; cor=; Ncor= a 0 0 0 0 0 0 0 11.0911 0.059952 0.059952 55.6954 0.059952 0.059952 0.059952 7.73381 7.2542 0 0 0 c 0 0 0 0 0 0 0 0.059952 0.059952 0.059952 35.3118 0.059952 0.059952 0.059952 0.059952 37.7098 0 0 0 g 0 0 0 0 0 0 0 88.789 99.8201 99.8201 0.059952 99.8201 99.8201 99.8201 92.1463 52.8177 0 0 0 t 0 0 0 0 0 0 0 0.059952 0.059952 0.059952 8.93285 0.059952 0.059952 0.059952 0.059952 2.21823 0 0 0