/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_cisBP_Homo_sapiens_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
		file1	1	12	11350
	file2	6607 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
		file2		1		7		100.0001
		file2		2		9		100.0001
		file2		3		8		100.00002892
		file2		4		9		100.0001
		file2		5		10		100.0001
		file2		6		11		100.00004702
		file2		7		10		100.00006
		file2		8		10		100.00005411
		file2		9		10		100.000031
		file2		10		10		100.0001
		file2		11		9		100
		...	6597 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m5 M08177_2.00 oligos_7nt_mkv5_m5 NRF1 0.864 0.792 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m5 M03580_2.00 oligos_7nt_mkv5_m5 NRF1 0.759 0.759 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m5 M04574_2.00 oligos_7nt_mkv5_m5 ZNF454 0.789 0.676 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv5_m5 M04572_2.00 oligos_7nt_mkv5_m5 ZNF454 0.781 0.670 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv5_m5 M09655_2.00 oligos_7nt_mkv5_m5 NRF1 0.786 0.665 12 12 11 13 0.8462 0.9167 0.9167 R -1
oligos_7nt_mkv5_m5 M08080_2.00 oligos_7nt_mkv5_m5 ZEB1 0.722 0.662 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv5_m5 M05963_2.00 oligos_7nt_mkv5_m5 M05963_2.00 0.714 0.595 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_7nt_mkv5_m5 M08284_2.00 oligos_7nt_mkv5_m5 ZNF213 0.703 0.563 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_7nt_mkv5_m5 M09751_2.00 oligos_7nt_mkv5_m5 TFAP2C,TFAP2D 0.743 0.557 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_mkv5_m5 M09443_2.00 oligos_7nt_mkv5_m5 NRF1 0.771 0.544 12 17 12 17 0.7059 1.0000 0.7059 D -2
oligos_7nt_mkv5_m5 M09755_2.00 oligos_7nt_mkv5_m5 TFAP2A,TFAP2D 0.706 0.530 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_7nt_mkv5_m5 M08705_2.00 oligos_7nt_mkv5_m5 TFAP2D 0.735 0.509 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_7nt_mkv5_m5 M08701_2.00 oligos_7nt_mkv5_m5 TFAP2B,TFAP2D 0.735 0.509 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_7nt_mkv5_m5 M04214_2.00 oligos_7nt_mkv5_m5 TCF4 0.744 0.496 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M02541_2.00 oligos_7nt_mkv5_m5 M02541_2.00 0.725 0.484 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv5_m5 M07842_2.00 oligos_7nt_mkv5_m5 ZEB1 0.722 0.482 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_7nt_mkv5_m5 M04215_2.00 oligos_7nt_mkv5_m5 TCF4 0.719 0.480 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M09002_2.00 oligos_7nt_mkv5_m5 M09002_2.00 0.713 0.475 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M08886_2.00 oligos_7nt_mkv5_m5 SNAI1 0.713 0.475 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M04138_2.00 oligos_7nt_mkv5_m5 TCF12 0.708 0.472 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M04137_2.00 oligos_7nt_mkv5_m5 TCF12 0.704 0.469 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m5 M09017_2.00 oligos_7nt_mkv5_m5 ZFY 0.731 0.462 12 19 12 19 0.6316 1.0000 0.6316 R -3
oligos_7nt_mkv5_m5 M02728_2.00 oligos_7nt_mkv5_m5 TCF4 0.751 0.438 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv5_m5 M01965_2.00 oligos_7nt_mkv5_m5 M01965_2.00 0.711 0.437 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m5 M09521_2.00 oligos_7nt_mkv5_m5 E2F1 0.757 0.433 12 10 8 14 0.5714 0.6667 0.8000 R -2
oligos_7nt_mkv5_m5 M08767_2.00 oligos_7nt_mkv5_m5 M08767_2.00 0.713 0.416 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_7nt_mkv5_m5 M08717_2.00 oligos_7nt_mkv5_m5 MYF6 0.713 0.416 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_7nt_mkv5_m5 M07721_2.00 oligos_7nt_mkv5_m5 ZNF786 0.706 0.412 12 7 7 12 0.5833 0.5833 1.0000 D 5
oligos_7nt_mkv5_m5 M07757_2.00 oligos_7nt_mkv5_m5 ZNF783 0.760 0.409 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_7nt_mkv5_m5 M01969_2.00 oligos_7nt_mkv5_m5 M01969_2.00 0.711 0.406 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m5 M01967_2.00 oligos_7nt_mkv5_m5 M01967_2.00 0.705 0.403 12 10 8 14 0.5714 0.6667 0.8000 R -2 
 Host name	rsat
 Job started	2026-01-04.221013
 Job done	2026-01-04.221021
 Seconds	2.8
	user	2.8
	system	0.65
	cuser	4.27
;	csystem	1.07