One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_cisBP_Homo_sapiens

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift6 ; 247 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift6 (positions_6nt_m3)
; positions_6nt_m3; m=0 (reference); ncol1=11; shift=6; ncol=17; ------wwCATAAAAww ; Alignment reference a 0 0 0 0 0 0 4879 5694 2520 15028 670 14344 15598 15868 14815 5543 5200 c 0 0 0 0 0 0 3935 3936 12502 612 993 727 285 365 595 3615 3791 g 0 0 0 0 0 0 3774 2732 675 238 1260 712 395 247 490 3278 3424 t 0 0 0 0 0 0 4213 4439 1104 923 13878 1018 523 321 901 4365 4386

M03228_2.00_rc_shift6 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M03228_2.00_rc (HOXC10,HOXC6_rc); m=1/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.850372; ------scmATwAAam- ; cor=; Ncor= a 0 0 0 0 0 0 22.9881 22.912 29.4875 96.4082 3.01548 63.1884 96.724 90.8811 65.6658 41.8959 0 c 0 0 0 0 0 0 38.4003 47.7654 56.3051 0.571429 0.733496 2.23602 0 5.07888 15.3183 26.4917 0 g 0 0 0 0 0 0 28.6457 6.22851 2.12157 2.61224 0 0 0.12285 1.69296 6.58882 7.65975 0 t 0 0 0 0 0 0 9.96586 23.094 12.0858 0.408163 96.251 34.5756 3.15315 2.34706 12.427 23.9526 0

M09672_2.00_shift7 (HOXC5,HOXC6)
; positions_6nt_m3 versus M09672_2.00 (HOXC5,HOXC6); m=2/246; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.84276; -------tmATAAAAcm ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 30.9524 85.7143 0 83.3333 100 88.6905 72.0238 19.6429 43.4524 c 0 0 0 0 0 0 0 19.0476 61.9048 0 0 0 0 7.7381 5.35714 50.5952 31.5476 g 0 0 0 0 0 0 0 0 0 14.2857 0 7.14286 0 0.595238 2.97619 12.5 10.119 t 0 0 0 0 0 0 0 66.6667 7.14286 0 100 9.52381 0 2.97619 19.6429 17.2619 14.881

M09572_2.00_rc_shift6 (M09572_2.00_rc)
; positions_6nt_m3 versus M09572_2.00_rc; m=3/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.811884; ------GymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 20.9 0.1 48.9 99.7 0.1 99.7 99.7 99.7 67.8 24.3 0 c 0 0 0 0 0 0 5.8 44.4 49.3 0.1 0.1 0.1 0.1 0.1 11.5 28.5 0 g 0 0 0 0 0 0 73.3 0.1 0.1 0.1 0.1 0.1 0.1 0.1 7.3 15.4 0 t 0 0 0 0 0 0 0.1 55.4 1.7 0.1 99.7 0.1 0.1 0.1 13.5 31.8 0

M03141_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m3 versus M03141_2.00_rc (HOXD13_rc); m=4/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.799989; ------symATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 4.59982 1.70455 60.9389 92.4731 0 86.2155 98.9928 99.8549 80.6565 35.3198 0 c 0 0 0 0 0 0 63.2935 57.2443 30.7352 0 0.145138 0 0.431655 0.145138 8.7925 30.0872 0 g 0 0 0 0 0 0 27.0469 0.568182 0 3.62903 0 0 0 0 3.98593 10.6105 0 t 0 0 0 0 0 0 5.0598 40.483 8.32595 3.89785 99.8549 13.7845 0.57554 0 6.56506 23.9826 0

M05104_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m3 versus M05104_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=5/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.783225; ------GymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 14.7175 0.429345 61.6247 98.915 1.00241 80.3284 99.4128 98.9425 76.0228 31.7739 0 c 0 0 0 0 0 0 4.67931 64.9431 33.9785 1.08504 0 0.165688 0 0.732839 8.95937 30.5738 0 g 0 0 0 0 0 0 75.5062 0.0186672 1.86619 0 0 0 0.0745643 0 5.4526 15.3853 0 t 0 0 0 0 0 0 5.09698 34.6089 2.53062 0 98.9976 19.5059 0.512629 0.324675 9.56522 22.267 0

M03229_2.00_rc_shift6 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M03229_2.00_rc (HOXC10,HOXC6_rc); m=6/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.776937; ------gymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 16.183 1.12086 53.0742 85.2054 6.59204 62.6422 94.7275 84.9163 58.7729 38.4554 0 c 0 0 0 0 0 0 20.1945 47.8731 37.0883 6.44429 0 1.16339 0.353179 7.21393 13.398 21.2517 0 g 0 0 0 0 0 0 57.0582 0.297097 8.32509 7.1931 0 1.75801 0.782038 2.48756 13.2415 14.6205 0 t 0 0 0 0 0 0 6.56435 50.709 1.51237 1.15725 93.408 34.4364 4.13724 5.38218 14.5876 25.6724 0

M03129_2.00_rc_shift6 (HOXC13_rc)
; positions_6nt_m3 versus M03129_2.00_rc (HOXC13_rc); m=7/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.776692; ------cyAATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 8.75 4.50539 69.3231 96.5046 0.312012 88.8112 98.1453 97.6923 79.8742 36.063 0 c 0 0 0 0 0 0 66.1458 62.1939 16.1572 0 0.312012 0 0.309119 1.23077 6.41509 27.874 0 g 0 0 0 0 0 0 19.6875 2.15475 0.10917 0.607903 0.312012 0.699301 0 0 5.15723 12.7559 0 t 0 0 0 0 0 0 5.41667 31.1459 14.4105 2.88754 99.064 10.4895 1.5456 1.07692 8.55346 23.3071 0

M03098_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m3 versus M03098_2.00_rc (HOXA13_rc); m=8/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.776239; ------cCmATAAAam- ; cor=; Ncor= a 0 0 0 0 0 0 12.1485 6.32737 55.2463 95.0276 0 82.1656 92.1429 92.1429 58.8369 31.528 0 c 0 0 0 0 0 0 58.0427 70.9766 27.7302 0 3.5514 2.86624 0.892857 5 19.9544 36.7505 0 g 0 0 0 0 0 0 19.685 1.51307 1.39186 0.368324 0 0.636943 1.60714 0 7.63968 8.31721 0 t 0 0 0 0 0 0 10.1237 21.1829 15.6317 4.60405 96.4486 14.3312 5.35714 2.85714 13.569 23.4043 0

M03253_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m3 versus M03253_2.00_rc (HOXC6_rc); m=9/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.774991; ------gyaATAAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 16.2188 1.85654 65.8694 93.9361 3.04963 73.7947 98.8604 94.0379 76.2135 47.3912 0 c 0 0 0 0 0 0 11.3017 46.9198 22.5892 2.86952 0 0.311968 0 1.27371 7.35779 20.5823 0 g 0 0 0 0 0 0 66.133 0.534459 6.83371 2.5176 0.748544 1.27623 0 1.54472 6.45728 10.4353 0 t 0 0 0 0 0 0 6.34648 50.6892 4.70767 0.676773 96.2018 24.6171 1.1396 3.14363 9.97145 21.5912 0

M03247_2.00_rc_shift6 (M03247_2.00_rc)
; positions_6nt_m3 versus M03247_2.00_rc; m=10/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.772814; ------syaATAAAah- ; cor=; Ncor= a 0 0 0 0 0 0 7.83909 4.30162 67.7388 95.208 0 85.9241 98.0447 96.517 64.4037 34.6464 0 c 0 0 0 0 0 0 54.3063 53.2895 16.8221 0 0.0473709 0.489596 0 2.38313 17.7982 30.3749 0 g 0 0 0 0 0 0 31.64 0 0 0.271248 0.189484 2.24398 0 0.091659 5.04587 8.68533 0 t 0 0 0 0 0 0 6.21454 42.4089 15.439 4.5208 99.7631 11.3423 1.95531 1.00825 12.7523 26.2933 0

M05334_2.00_rc_shift6 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m3 versus M05334_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=11/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.772217; ------GymATWAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 9.82014 0 61.6409 95.1728 1.78371 73.9996 99.2772 99.747 69.4269 23.6483 0 c 0 0 0 0 0 0 7.97769 54.1721 33.6645 1.53379 0 0.223985 0 0 11.592 33.6769 0 g 0 0 0 0 0 0 76.6059 0 0.0655539 3.20772 0 0 0 0 7.4459 14.2495 0 t 0 0 0 0 0 0 5.59629 45.8279 4.62912 0.0856431 98.2163 25.7764 0.722813 0.252958 11.5352 28.4254 0

M09202_2.00_rc_shift6 (M09202_2.00_rc)
; positions_6nt_m3 versus M09202_2.00_rc; m=12/246; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.77117; ------cCaATWAwAyc ; cor=; Ncor= a 0 0 0 0 0 0 3.10345 17.2414 59.3103 82.7586 0 73.7931 93.7931 58.6207 80.6897 22.069 11.2069 c 0 0 0 0 0 0 67.931 76.5517 23.4483 0 0 0 0 12.4138 19.3103 37.2414 50.5172 g 0 0 0 0 0 0 18.9655 6.2069 6.2069 17.2414 0 0 0 0 0 6.2069 19.4828 t 0 0 0 0 0 0 10 0 11.0345 0 100 26.2069 6.2069 28.9655 0 34.4828 18.7931

M09134_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m3 versus M09134_2.00_rc (HOXA13_rc); m=13/246; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.77117; ------cCaATWAwAyc ; cor=; Ncor= a 0 0 0 0 0 0 3.10345 17.2414 59.3103 82.7586 0 73.7931 93.7931 58.6207 80.6897 22.069 11.2069 c 0 0 0 0 0 0 67.931 76.5517 23.4483 0 0 0 0 12.4138 19.3103 37.2414 50.5172 g 0 0 0 0 0 0 18.9655 6.2069 6.2069 17.2414 0 0 0 0 0 6.2069 19.4828 t 0 0 0 0 0 0 10 0 11.0345 0 100 26.2069 6.2069 28.9655 0 34.4828 18.7931

M05290_2.00_rc_shift6 (HOXB9,HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M05290_2.00_rc (HOXB9,HOXC5,HOXC6_rc); m=14/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.764718; ------GymATWAAay- ; cor=; Ncor= a 0 0 0 0 0 0 15.6062 1.47826 56.8627 88.7755 0 68.1325 97.416 97.1649 65.3757 20.1413 0 c 0 0 0 0 0 0 3.95177 58.3478 35.2438 1.64835 0 0 0 2.23368 13.6994 31.5371 0 g 0 0 0 0 0 0 75.7535 0.173913 3.46908 7.29984 0 1.92771 0 0.601375 7.74566 14.0459 0 t 0 0 0 0 0 0 4.68855 40 4.42433 2.2763 100 29.9398 2.58398 0 13.1792 34.2756 0

M05109_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m3 versus M05109_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=15/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.763206; ------GymATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 0 6.77436 0 61.4965 96.0721 1.2969 75.0046 99.2539 100 74.4619 25.356 0 c 0 0 0 0 0 0 4.54403 59.5733 32.4827 1.32691 0 0.0366703 0 0 10.0205 35.4703 0 g 0 0 0 0 0 0 85.2684 0.25602 2.53683 2.5775 0 0 0 0 5.53356 13.2555 0 t 0 0 0 0 0 0 3.41324 40.1707 3.48391 0.0234852 98.7031 24.9587 0.746088 0 9.98407 25.9182 0

M08420_2.00_rc_shift5 (M08420_2.00_rc)
; positions_6nt_m3 versus M08420_2.00_rc; m=16/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.762909; -----rgymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 37.0821 24.9674 0 32.3491 91.9236 0 97.0908 100 100 71.0812 45.419 0 c 0 0 0 0 0 0 14.8068 64.3074 64.0469 0 4.12505 0 0 0 4.99349 32.7833 0 g 0 0 0 0 0 49.6309 60.2258 0 0 8.07642 0 0 0 0 6.38298 0 0 t 0 0 0 0 0 13.287 0 35.6926 3.60399 0 95.8749 2.90925 0 0 17.5423 21.7977 0

M11389_2.00_shift6 (TBP,TBPL2)
; positions_6nt_m3 versus M11389_2.00 (TBP,TBPL2); m=17/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.76235; ------yCTWTAAAAr- ; cor=; Ncor= a 0 0 0 0 0 0 22.4551 0 2.46821 72.9993 0 100 92.8144 100 100 29.3413 0 c 0 0 0 0 0 0 29.1168 76.2154 24.9065 0 0 0 0 0 0 10.1796 0 g 0 0 0 0 0 0 18.5629 19.8953 0 0 0 0 0 0 0 45.7335 0 t 0 0 0 0 0 0 29.8653 3.8893 72.6253 27.0007 100 0 7.18563 0 0 14.7455 0

M03100_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m3 versus M03100_2.00_rc (HOXA13_rc); m=18/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.761842; ------cyaATAAAam- ; cor=; Ncor= a 0 0 0 0 0 0 16.1458 0.262467 66.9377 88.8489 0 89.4928 93.9163 98.8 64.1558 42.1053 0 c 0 0 0 0 0 0 64.3229 64.8294 18.9702 0 0 3.26087 0 1.2 15.5844 29.1498 0 g 0 0 0 0 0 0 18.4896 2.09974 2.43902 0 0 1.81159 0 0 11.4286 9.31174 0 t 0 0 0 0 0 0 1.04167 32.8084 11.6531 11.1511 100 5.43478 6.08365 0 8.83117 19.4332 0

M03175_2.00_rc_shift6 (HOXB13_rc)
; positions_6nt_m3 versus M03175_2.00_rc (HOXB13_rc); m=19/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.759856; ------CCaATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 7.41236 3.22043 64.4645 94.4312 0 88.7648 99.3924 96.6632 72.3465 35.5268 0 c 0 0 0 0 0 0 74.418 77.2071 23.1803 0.747029 0.251076 0.702202 0 2.6764 14.308 36.4617 0 g 0 0 0 0 0 0 13.8614 0.388673 0.278164 1.29032 0 0.829876 0 0.0347584 4.37045 6.90399 0 t 0 0 0 0 0 0 4.30827 19.1838 12.077 3.53141 99.7489 9.70316 0.607577 0.625652 8.97503 21.1075 0

M05114_2.00_rc_shift6 (HOXC6,HOXD10_rc)
; positions_6nt_m3 versus M05114_2.00_rc (HOXC6,HOXD10_rc); m=20/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.758577; ------GymATAAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 2.08132 0 66.1914 100 1.91147 85.0044 100 99.8464 80.8458 20.5747 0 c 0 0 0 0 0 0 0 36.6855 32.9939 0 0 0 0 0.15361 9.16252 40.1744 0 g 0 0 0 0 0 0 94.3853 0 0.814664 0 0 0 0 0 3.93864 12.7245 0 t 0 0 0 0 0 0 3.5334 63.3145 0 0 98.0885 14.9956 0 0 6.05307 26.5264 0

M05111_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m3 versus M05111_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=21/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.75617; ------GymATWAAac- ; cor=; Ncor= a 0 0 0 0 0 0 10.1076 0 58.1854 91.6367 1.29834 71.4686 98.4293 94.9747 61.6287 19.037 0 c 0 0 0 0 0 0 6.23039 59.7592 37.84 1.82145 0 0.580232 0 4.73278 14.4755 40.2856 0 g 0 0 0 0 0 0 80.0538 0 0 4.84864 0.0276243 0 0 0 10.4382 17.8331 0 t 0 0 0 0 0 0 3.60825 40.2408 3.97459 1.69318 98.674 27.9512 1.57068 0.292475 13.4576 22.8443 0

M05332_2.00_rc_shift6 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m3 versus M05332_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=22/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.752566; ------GyMATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 1.98058 0 68.1787 99.9668 0.298211 80.33 99.4513 100 84.5367 26.1416 0 c 0 0 0 0 0 0 0.440838 58.2414 29.1385 0 0 0 0.548652 0 6.19767 35.7461 0 g 0 0 0 0 0 0 96.1219 0 0.729596 0.0332226 0 0 0 0 3.27021 13.7122 0 t 0 0 0 0 0 0 1.45668 41.7586 1.95314 0 99.7018 19.67 0 0 5.99539 24.4001 0

M05106_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m3 versus M05106_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=23/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.749744; ------GymATwAAac- ; cor=; Ncor= a 0 0 0 0 0 0 13.8921 0.833611 52.2121 80.5525 1.84818 67.5449 95.7502 89.0153 50.5524 15.0639 0 c 0 0 0 0 0 0 8.66215 60.5869 41.0639 8.12568 0 1.83965 0.193175 6.37534 17.1851 43.3759 0 g 0 0 0 0 0 0 69.4373 0 1.63272 10.5092 0 1.88508 0 1.25711 15.6383 21.0491 0 t 0 0 0 0 0 0 8.00841 38.5795 5.09129 0.812568 98.1518 28.7304 4.05666 3.35229 16.6242 20.5111 0

M05112_2.00_rc_shift6 (HOXC6,HOXD10_rc)
; positions_6nt_m3 versus M05112_2.00_rc (HOXC6,HOXD10_rc); m=24/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.74699; ------GymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 4.5835 0 58.1965 98.303 0.710702 79.0613 100 97.0973 60.4787 18.9474 0 c 0 0 0 0 0 0 0 57.702 39.0591 0 0 0 0 2.04415 15.2024 37.4316 0 g 0 0 0 0 0 0 94.6592 0 1.9603 1.69702 0 0 0 0 11.7647 16.5895 0 t 0 0 0 0 0 0 0.757274 42.298 0.784122 0 99.2893 20.9387 0 0.858545 12.5541 27.0316 0

M03252_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m3 versus M03252_2.00_rc (HOXC6_rc); m=25/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.744204; ------gTCrTWAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 23.7829 0.72904 8.37809 50.095 0 71.8204 97.284 94.0334 71.3122 47.0812 0 c 0 0 0 0 0 0 13.328 3.52369 84.6402 0 0 1.24688 0 3.22196 9.04977 20.3046 0 g 0 0 0 0 0 0 62.8891 0 1.28894 49.905 0.126743 0.498753 0 0 5.42986 6.34518 0 t 0 0 0 0 0 0 0 95.7473 5.6928 0 99.8733 26.4339 2.71605 2.74463 14.2081 26.269 0

M05078_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M05078_2.00_rc (HOXC11_rc); m=26/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.738763; -----rgymATAAAam- ; cor=; Ncor= a 0 0 0 0 0 32.6068 14.0663 0 44.0869 91.452 0 75.0962 99.2376 96.5389 62.48 26.7136 0 c 0 0 0 0 0 13.993 15.8044 47.7927 48.6311 0.87822 0 1.25 0 2.47219 15.28 37.476 0 g 0 0 0 0 0 35.4839 63.1366 0 1.35478 7.37705 0 0 0.508259 0.123609 5.4 14.8623 0 t 0 0 0 0 0 17.9163 6.99272 52.2073 5.92718 0.29274 100 23.6538 0.25413 0.865266 16.84 20.9481 0

M03134_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M03134_2.00_rc (HOXC11_rc); m=27/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.736761; -----rgymATAAAam- ; cor=; Ncor= a 0 0 0 0 0 37.6102 17.3513 1.68067 46.2619 83.0757 7.16814 73.4675 91.8165 90.1943 66.3849 37.3777 0 c 0 0 0 0 0 13.4182 15.0828 57.8898 42.9089 0.895037 0 5.3065 0 6.00707 14.0442 26.0274 0 g 0 0 0 0 0 32.9089 62.5996 2.98786 7.65745 9.03173 2.47788 1.18939 0.44964 0 5.0065 17.319 0 t 0 0 0 0 0 16.0627 4.96628 37.4416 3.17173 6.99756 90.354 20.0366 7.73381 3.79859 14.5644 19.2759 0

M05117_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m3 versus M05117_2.00 (HOXC6,HOXD10); m=28/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.736163; -----grymATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 22.9161 33.1789 2.23572 67.5634 98.1169 5.1393 87.2968 99.9427 97.7324 82.9807 33.6293 0 c 0 0 0 0 0 10.0831 10.0556 31.4656 30.2303 0.140528 0 0 0.0572574 0 6.8695 33.1997 0 g 0 0 0 0 0 55.3423 53.9234 1.40767 1.35475 1.74255 0.432783 0 0 0.167973 3.56549 8.1352 0 t 0 0 0 0 0 11.6586 2.84214 64.891 0.851558 0 94.4279 12.7032 0 2.09966 6.58426 25.0358 0

M03282_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03282_2.00_rc (HOXC5,HOXC6_rc); m=29/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.733993; ------scmATwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 14.9888 23.1231 32.4675 71.6312 0 58.5507 81.4516 81.4516 66.8317 0 0 c 0 0 0 0 0 0 45.1902 60.6607 65.5844 0 6.48148 8.69565 14.1129 4.43548 14.3564 0 0 g 0 0 0 0 0 0 33.1096 0 1.94805 18.7943 0 0 0 0 15.3465 0 0 t 0 0 0 0 0 0 6.71141 16.2162 0 9.57447 93.5185 32.7536 4.43548 14.1129 3.46535 0 0

M03283_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03283_2.00_rc (HOXC5,HOXC6_rc); m=30/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.733572; ------gymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 23.2919 4.75248 63.1922 83.6207 5.88235 50.2538 91.0798 93.2692 63.8158 42.5641 0 c 0 0 0 0 0 0 13.6646 54.4554 25.0814 0.862069 3.16742 1.52284 0.938967 3.36538 8.55263 14.359 0 g 0 0 0 0 0 0 60.2484 2.37624 11.7264 13.3621 3.16742 0 0 0 13.1579 9.74359 0 t 0 0 0 0 0 0 2.79503 38.4158 0 2.15517 87.7828 48.2234 7.98122 3.36538 14.4737 33.3333 0

M09433_2.00_shift7 (TBPL2)
; positions_6nt_m3 versus M09433_2.00 (TBPL2); m=31/246; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.732607; -------sTATAAAArs ; cor=; Ncor= a 0 0 0 0 0 0 0 16.4 13.4 76.8 3.6 91.4 85.2 94.6 76.2 40.8 11.4 c 0 0 0 0 0 0 0 50.4 11.4 1.6 4.4 3 1.8 0 0.6 1.8 37 g 0 0 0 0 0 0 0 27.4 4.8 2.4 10.2 3.6 1 5 7.2 53.8 43 t 0 0 0 0 0 0 0 5.8 70.4 19.2 81.8 2 12 0.4 16 3.6 8.6

M03085_2.00_rc_shift5 (HOXA9,HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03085_2.00_rc (HOXA9,HOXC5,HOXC6_rc); m=32/246; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.727722; -----rrTCrTWAAaww ; cor=; Ncor= a 0 0 0 0 0 29.5966 28.7476 3.49068 8.20513 40.4593 0.861498 70.9492 97.9058 92.0238 55.305 30.7418 26.8939 c 0 0 0 0 0 17.7179 14.2228 6.78302 88.5207 0.0918635 0 0.507726 0 2.46053 14.9353 23.2346 20.41 g 0 0 0 0 0 33.3853 56.4884 0.714002 0.0788955 58.8976 0 0.441501 0 0.51261 9.31608 16.0392 21.2344 t 0 0 0 0 0 19.3002 0.541221 89.0123 3.19527 0.551181 99.1385 28.1015 2.09424 5.00308 20.4436 29.9844 31.4617

M03230_2.00_rc_shift6 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M03230_2.00_rc (HOXC10,HOXC6_rc); m=33/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.725982; ------rTCrTwAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 25.9324 0.746697 8.53659 44.8716 0.833848 67.2152 96.6877 90.1966 59.8732 30.7597 0 c 0 0 0 0 0 0 18.1093 7.03619 87.019 0.102058 0 0.155231 0.0903342 2.13483 10.2741 21.1395 0 g 0 0 0 0 0 0 55.6982 0 0.325203 54.6181 0 0.124185 0.150557 2.41573 9.91982 14.1034 0 t 0 0 0 0 0 0 0.260191 92.2171 4.11924 0.408233 99.1662 32.5054 3.07136 5.25281 19.9329 33.9975 0

M03132_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M03132_2.00_rc (HOXC11_rc); m=34/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.725863; -----rgymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 38.2692 23.0514 3.31594 52.1985 76.1924 7.26854 67.8743 90.2529 88.7054 62.8371 36.3894 0 c 0 0 0 0 0 11.2963 15.9764 48.443 32.8983 7.53952 0 1.23626 1.34443 5.41136 12.0348 23.036 0 g 0 0 0 0 0 30.3245 52.0155 1.76738 6.47042 11.4579 0 1.94025 1.02433 1.44722 8.5692 14.7367 0 t 0 0 0 0 0 20.1099 8.95674 46.4737 8.43284 4.81016 92.7315 28.9492 7.37836 4.43605 16.5589 25.8379 0

M00253_2.00_shift6 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m3 versus M00253_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=35/246; ncol2=11; w=0; offset=0; strand=D; shift=6; score=0.725765; ------tgwATAAwyAa ; cor=; Ncor= a 0 0 0 0 0 0 19.9681 17.6087 26.8585 80.7059 0.028741 89.438 89.8691 59.4016 24.5082 77.74 46.8931 c 0 0 0 0 0 0 19.9681 17.6087 17.8925 0.028741 0.028741 0.028741 10.0734 0.028741 35.6583 7.41999 17.7023 g 0 0 0 0 0 0 19.9681 47.1738 7.32644 19.2366 0.028741 0.028741 0.028741 9.48884 5.06064 7.41999 17.7023 t 0 0 0 0 0 0 40.0957 17.6087 47.9225 0.028741 99.9138 10.5045 0.028741 31.0808 34.7728 7.41999 17.7023

M03196_2.00_rc_shift6 (CDX2_rc)
; positions_6nt_m3 versus M03196_2.00_rc (CDX2_rc); m=36/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.725185; ------gymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 23.0595 3.59152 52.8683 90.4723 1.19469 92.4465 93.1107 92.3303 55.9437 0 0 c 0 0 0 0 0 0 18.4748 51.1034 38.052 0.533881 1.0177 0.96517 0 1.96982 20.6443 0 0 g 0 0 0 0 0 0 53.8357 1.08178 1.11432 8.9117 0.309735 0.125892 0.845309 2.13747 10.2541 0 0 t 0 0 0 0 0 0 4.63005 44.2233 7.96533 0.0821355 97.4779 6.46244 6.04396 3.56245 13.1579 0 0

M05076_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M05076_2.00_rc (HOXC11_rc); m=37/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.723696; -----rGymATWAAah- ; cor=; Ncor= a 0 0 0 0 0 30.2594 12.2415 0 44.0268 85.3491 0 73.2003 99.5993 97.9851 63.1921 26.2852 0 c 0 0 0 0 0 11.8156 10.8072 46.5802 47.963 2.82335 0.0893256 0.719895 0 0.175208 12.5141 32.4989 0 g 0 0 0 0 0 41.3705 74.6164 0 3.32612 11.8275 0 0 0 0 7.23164 16.1824 0 t 0 0 0 0 0 16.5546 2.33489 53.4198 4.68412 0 99.9107 26.0798 0.400712 1.83968 17.0621 25.0335 0

M03275_2.00_rc_shift5 (M03275_2.00_rc)
; positions_6nt_m3 versus M03275_2.00_rc; m=38/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.723036; -----rgymATwAAah- ; cor=; Ncor= a 0 0 0 0 0 25.2475 17.3719 0 43.6285 72.2719 6.91244 58.4323 94.6136 91.8182 56.9014 28.2178 0 c 0 0 0 0 0 18.5644 23.3853 52.3342 45.0324 16.6369 0 3.32542 0 7.04545 19.2958 25.2475 0 g 0 0 0 0 0 39.604 44.9889 0.982801 8.09935 10.9123 0 0.950119 0 0.909091 10.7042 17.8218 0 t 0 0 0 0 0 16.5842 14.2539 46.683 3.23974 0.178891 93.0876 37.2922 5.38642 0.227273 13.0986 28.7129 0

M05080_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M05080_2.00_rc (HOXC11_rc); m=39/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.722439; -----rgymATwAAam- ; cor=; Ncor= a 0 0 0 0 0 28.7001 11.8873 2.21811 41.5228 78.7202 0 67.2173 95.8333 95.3153 58.5825 26.9811 0 c 0 0 0 0 0 14.6718 16.6667 59.7043 48.2732 6.84524 0 4.7014 0 0.900901 17.165 34.3396 0 g 0 0 0 0 0 39.3822 64.8284 0.184843 4.23862 13.9881 0.56391 0 0.181159 2.16216 6.97674 16.9811 0 t 0 0 0 0 0 17.2458 6.61765 37.8928 5.96546 0.446429 99.4361 28.0813 3.98551 1.62162 17.2757 21.6981 0

M04900_2.00_rc_shift5 (HOXA11_rc)
; positions_6nt_m3 versus M04900_2.00_rc (HOXA11_rc); m=40/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.717033; -----rGymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 34.1365 3.94737 0 49.2754 86.7347 0 80.1887 97.1429 93.9227 60.9319 20.5882 0 c 0 0 0 0 0 12.0482 13.5965 50 44.6377 0 0 0 0 2.20994 8.96057 30.5882 0 g 0 0 0 0 0 34.1365 74.5614 0 3.47826 10.7143 0 0 0 0 17.5627 11.7647 0 t 0 0 0 0 0 19.6787 7.89474 50 2.6087 2.55102 100 19.8113 2.85714 3.8674 12.5448 37.0588 0

M04898_2.00_rc_shift5 (HOXA11_rc)
; positions_6nt_m3 versus M04898_2.00_rc (HOXA11_rc); m=41/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.716484; -----rgymATaAAah- ; cor=; Ncor= a 0 0 0 0 0 26.5446 10.8647 1.67224 42.0144 74.6803 0 66.8192 96.0526 91.25 57.0312 25.256 0 c 0 0 0 0 0 15.5606 18.1818 49.8328 45.7554 4.85934 0 4.11899 0.657895 7.5 13.8672 33.7884 0 g 0 0 0 0 0 40.5034 64.745 0.334448 7.76978 18.4143 0 4.11899 0 0 10.1562 9.21502 0 t 0 0 0 0 0 17.3913 6.20843 48.1605 4.46043 2.04604 100 24.9428 3.28947 1.25 18.9453 31.7406 0

M03115_2.00_rc_shift6 (CDX1_rc)
; positions_6nt_m3 versus M03115_2.00_rc (CDX1_rc); m=42/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.715408; ------gymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 24.1104 3.01607 51.1102 90.5753 0.300623 83.257 90.3634 86.9084 50.1402 0 0 c 0 0 0 0 0 0 16.7889 53.6736 38.8151 1.30872 0.128838 2.69324 0.721037 4.59188 18.8376 0 0 g 0 0 0 0 0 0 52.9545 0.198288 1.9296 7.3933 0 1.00548 0.760012 2.39903 13.554 0 0 t 0 0 0 0 0 0 6.14622 43.1121 8.14506 0.722727 99.5705 13.0443 8.15551 6.10065 17.4682 0 0

M05335_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M05335_2.00_rc (HOXC10,HOXC6_rc); m=43/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.71339; -----gGymATAAAac- ; cor=; Ncor= a 0 0 0 0 0 18.8 13.1285 0 50 88.968 0 77.2201 100 95.8773 56.4334 16.9 0 c 0 0 0 0 0 23.9 10.6145 58.8412 43.95 3.73665 0 0.15444 0 3.54746 19.6953 43.8 0 g 0 0 0 0 0 40.3 69.8324 0 2.65 5.78292 0 0.15444 0 0.575264 10.4966 17.5 0 t 0 0 0 0 0 17 6.42458 41.1588 3.4 1.51246 100 22.471 0 0 13.3747 21.8 0

M03086_2.00_rc_shift5 (HOXA9,HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03086_2.00_rc (HOXA9,HOXC5,HOXC6_rc); m=44/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.711995; -----rgymATWAAaa- ; cor=; Ncor= a 0 0 0 0 0 27.6187 17.441 1.78031 56.3391 85.3375 4.18998 69.4072 94.4125 89.1122 59.5199 35.9981 0 c 0 0 0 0 0 16.9769 12.6367 44.9965 30.3576 4.63293 0.125585 0.978223 0.405542 6.03934 14.7859 24.9254 0 g 0 0 0 0 0 35.7075 60.2776 0.686525 6.87013 7.31086 0 1.40911 0.856145 1.32908 11.0788 14.6761 0 t 0 0 0 0 0 19.697 9.64471 52.5367 6.43318 2.71866 95.6844 28.2054 4.32579 3.5194 14.6154 24.4004 0

M05337_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M05337_2.00_rc (HOXC10,HOXC6_rc); m=45/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.711772; -----gGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 19.8486 7.35184 0 60.3247 100 2.13992 90.6941 99.3317 99.8321 75.6843 18.587 0 c 0 0 0 0 0 21.9512 1.80045 45.8754 39.5231 0 0 0 0.668338 0 13.4309 40.286 0 g 0 0 0 0 0 43.9024 89.1973 0 0.152207 0 0 0 0 0.167926 3.50095 20.6056 0 t 0 0 0 0 0 14.2977 1.65041 54.1246 0 0 97.8601 9.30587 0 0 7.38383 20.5214 0

M05129_2.00_rc_shift5 (CDX4_rc)
; positions_6nt_m3 versus M05129_2.00_rc (CDX4_rc); m=46/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.710331; -----gGymATAAAac- ; cor=; Ncor= a 0 0 0 0 0 15.8899 9.35999 0 52.9731 100 0 100 100 99.7567 63.4025 11.6185 0 c 0 0 0 0 0 9.53909 3.93171 62.8295 46.92 0 0 0 0 0.24334 17.6177 49.0157 0 g 0 0 0 0 0 52.0221 86.3462 0 0.10687 0 0 0 0 0 5.88251 16.0818 0 t 0 0 0 0 0 22.5489 0.362131 37.1705 0 0 100 0 0 0 13.0973 23.284 0

M05018_2.00_rc_shift5 (CDX1_rc)
; positions_6nt_m3 versus M05018_2.00_rc (CDX1_rc); m=47/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.708538; -----gGYmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 17.0851 8.8375 0 37.9113 100 0 99.9474 100 99.9001 60.7353 9.38043 0 c 0 0 0 0 0 13.0059 0 70.2284 61.9416 0 0 0 0 0 23.0946 56.2878 0 g 0 0 0 0 0 46.234 91.1481 0.00526371 0.147167 0 0 0.0526094 0 0.0999106 5.39322 14.1759 0 t 0 0 0 0 0 23.6749 0.0143933 29.7663 0 0 100 0 0 0 10.7769 20.1558 0

M03773_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03773_2.00_rc (HOXC5,HOXC6_rc); m=48/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.708288; -----rGymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 43.5344 8.4259 0 55.9181 95.4386 0.691069 76.9416 99.2712 97.0896 74.5341 32.1098 0 c 0 0 0 0 0 9.31406 3.73973 55.9107 36.6758 1.26259 0 0 0 2.05657 10.6868 34.5186 0 g 0 0 0 0 0 35.5433 85.9481 0 1.68477 3.06525 0 0.517769 0 0.215309 4.33172 9.27583 0 t 0 0 0 0 0 11.6082 1.8863 44.0893 5.72137 0.233543 99.3089 22.5406 0.728763 0.638503 10.4474 24.0957 0

M05105_2.00_shift6 (HOXC5,HOXC6,HOXD9)
; positions_6nt_m3 versus M05105_2.00 (HOXC5,HOXC6,HOXD9); m=49/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.707084; ------rTCRTAAAah- ; cor=; Ncor= a 0 0 0 0 0 0 26.7053 0 0 31.6343 0 83.5984 99.3468 98.3487 63.5407 26.089 0 c 0 0 0 0 0 0 10.0474 3.53381 99.9062 0 0 0 0 0 11.4518 30.3041 0 g 0 0 0 0 0 0 63.0891 0 0.0938416 68.3657 0 0 0 0 8.0946 12.5631 0 t 0 0 0 0 0 0 0.158144 96.4662 0 0 100 16.4016 0.653214 1.65127 16.9129 31.0438 0

M05395_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m3 versus M05395_2.00_rc (HOXA10,HOXC6_rc); m=50/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.704898; -----gGymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 19.511 5.65533 0 66.6963 99.2672 1.43147 89.1947 100 99.9154 85.0716 29.735 0 c 0 0 0 0 0 9.82813 1.38316 38.8708 31.4553 0 0 0 0 0.0846433 6.3832 32.7484 0 g 0 0 0 0 0 60.4696 92.1695 0.108814 0.968601 0.732821 0 0 0 0 4.02553 14.6073 0 t 0 0 0 0 0 10.1912 0.791969 61.0204 0.879813 0 98.5685 10.8053 0 0 4.51972 22.9094 0

M05397_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m3 versus M05397_2.00_rc (HOXA10,HOXC6_rc); m=51/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.704496; -----gGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 21.045 6.6766 0 66.0948 99.4622 5.32423 83.0042 98.8596 99.3553 73.5419 24.297 0 c 0 0 0 0 0 18.1261 6.05067 40.1512 31.6893 0 0 0.179533 0 0.644699 10.6045 37.0584 0 g 0 0 0 0 0 48.8649 82.6826 0.10803 0.476531 0.537827 0 0.867744 0.0712758 0 5.27572 13.951 0 t 0 0 0 0 0 11.964 4.59016 59.7407 1.73934 0 94.6758 15.9485 1.06914 0 10.5779 24.6936 0

M09581_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m3 versus M09581_2.00_rc (HOXC6_rc); m=52/246; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.704363; ------cCCATtAAAt- ; cor=; Ncor= a 0 0 0 0 0 0 12.3 9.1 12.3 94.2 13.5 22.8 76.4 84.4 69.5 16.5 0 c 0 0 0 0 0 0 65.9 70.2 85.2 2.2 1.5 9.5 10.5 8.3 5.7 21.6 0 g 0 0 0 0 0 0 18.4 5.3 0.7 2 1.3 2.3 2.7 2 2.3 1.4 0 t 0 0 0 0 0 0 3.4 15.4 1.8 1.6 83.7 65.4 10.4 5.3 22.5 60.5 0

M05339_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M05339_2.00_rc (HOXC10,HOXC6_rc); m=53/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.703895; -----gGymATAAAAy- ; cor=; Ncor= a 0 0 0 0 0 22.6127 5.74952 0 63.9614 99.3696 1.03513 88.3101 100 100 78.5666 21.8107 0 c 0 0 0 0 0 15.0351 0.256246 46.2963 36.0386 0 0 0 0 0 9.26849 38.4259 0 g 0 0 0 0 0 46.4255 93.4017 0 0 0.630431 0 0 0 0 4.27051 13.9918 0 t 0 0 0 0 0 15.9266 0.592569 53.7037 0 0 98.9649 11.6899 0 0 7.89438 25.7716 0

M00394_2.00_rc_shift6 (M00394_2.00_rc)
; positions_6nt_m3 versus M00394_2.00_rc; m=54/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.702046; ------cymrtaAaw-- ; cor=; Ncor= a 0 0 0 0 0 0 20.9474 16.1811 29.3897 46.8319 10.3931 51.8823 69.4873 63.7168 36.6209 0 0 c 0 0 0 0 0 0 37.4129 31.9395 34.8357 9.93997 14.8967 10.4749 4.76427 11.64 20.71 0 0 g 0 0 0 0 0 0 24.8291 12.4764 11.7123 32.6735 13.0807 13.8596 11.1467 8.45238 15.8096 0 0 t 0 0 0 0 0 0 16.8107 39.403 24.0622 10.5546 61.6295 23.7832 14.6018 16.1909 26.8595 0 0

M00298_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m3 versus M00298_2.00_rc (HOXD13_rc); m=55/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.699274; ------cyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 19.2222 16.3719 33.1819 64.2146 3.11498 60.0605 79.1532 75.984 40.5661 0 0 c 0 0 0 0 0 0 36.0918 39.8678 29.7255 2.29844 6.2728 4.32907 3.03857 8.17044 20.347 0 0 g 0 0 0 0 0 0 21.6729 9.44578 6.76664 28.0007 0.0332474 6.08211 5.11095 4.01695 14.4824 0 0 t 0 0 0 0 0 0 23.0131 34.3145 30.326 5.48617 90.579 29.5284 12.6973 11.8286 24.6046 0 0

M05119_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m3 versus M05119_2.00 (HOXC6,HOXD10); m=56/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.698314; -----gGYAATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 23.2891 9.95851 0 77.8219 100 2.1978 91.5809 100 99.5931 88.7579 29.6221 0 c 0 0 0 0 0 11.5424 8.79668 30.4392 22.1781 0 0 0 0 0 9.15684 34.525 0 g 0 0 0 0 0 50.8682 81.2448 0 0 0 0 0 0 0 2.08522 8.27375 0 t 0 0 0 0 0 14.3003 0 69.5608 0 0 97.8022 8.41908 0 0.406918 0 27.5792 0

M05341_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m3 versus M05341_2.00_rc (HOXC10,HOXC6_rc); m=57/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.697288; -----rGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 28.4666 0 0 67.4123 100 4.503 94.1467 99.6173 100 95.5289 19.4969 0 c 0 0 0 0 0 12.2599 0 46.1753 32.5877 0 0 0 0.208768 0 1.66834 45.5276 0 g 0 0 0 0 0 46.1404 100 0 0 0 0 0 0.173974 0 0 11.4605 0 t 0 0 0 0 0 13.1331 0 53.8247 0 0 95.497 5.85334 0 0 2.8028 23.515 0

M05124_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m3 versus M05124_2.00_rc (HOXD13_rc); m=58/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.69721; -----rsyAATAAAac- ; cor=; Ncor= a 0 0 0 0 0 36.4912 17.084 2.31729 71.1932 95.1301 0 87.0574 98.8904 94.0633 59.6902 23.8596 0 c 0 0 0 0 0 24.2105 48.9194 63.5472 18.7718 0 0 0 0 2.90237 20.3851 45.5439 0 g 0 0 0 0 0 28.9825 28.9194 0.935829 0 1.33422 0 0.610501 0 0.395778 3.9347 8.77193 0 t 0 0 0 0 0 10.3158 5.07719 33.1996 10.0349 3.53569 100 12.3321 1.10957 2.63852 15.99 21.8246 0

M04981_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m3 versus M04981_2.00_rc (HOXA13_rc); m=59/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.697207; -----mCYaATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 29.6263 4.7443 1.00566 67.8744 97.316 0 91.7551 98.2517 95.9863 68.5784 27.6444 0 c 0 0 0 0 0 32.8292 69.2545 70.6474 20.1691 0 0 0 0.437063 1.87874 13.1788 36.4444 0 g 0 0 0 0 0 18.0605 20.5176 0 0.966184 0.865801 0 0 0.786713 0 5.2471 11.5556 0 t 0 0 0 0 0 19.484 5.48367 28.347 10.9903 1.81818 100 8.2449 0.524476 2.13493 12.9957 24.3556 0

M06211_2.00_shift7 (HOXC5,HOXC6)
; positions_6nt_m3 versus M06211_2.00 (HOXC5,HOXC6); m=60/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.695049; -------yCATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 14.2857 85.7143 0 100 100 85.7143 71.4286 0 0 c 0 0 0 0 0 0 0 28.5714 71.4286 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 14.2857 14.2857 0 0 0 0 14.2857 0 0 t 0 0 0 0 0 0 0 57.1429 0 0 100 0 0 14.2857 14.2857 0 0

M04979_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m3 versus M04979_2.00_rc (HOXA13_rc); m=61/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.691647; -----asYAATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 30.6698 7.80094 0.940975 74.6491 94.9777 0 96.376 95.9414 94.5556 70.5638 30.4462 0 c 0 0 0 0 0 24.9119 57.2293 72.7973 17.0175 0 0 0 0 2.11111 18.6567 44.007 0 g 0 0 0 0 0 22.7967 28.1103 0 0 2.79018 0 0 0 0 3.56551 6.3867 0 t 0 0 0 0 0 21.6216 6.85945 26.2618 8.33333 2.23214 100 3.62401 4.05862 3.33333 7.21393 19.1601 0

M05401_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m3 versus M05401_2.00_rc (HOXA10,HOXC6_rc); m=62/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.691454; -----sgymATWAAay- ; cor=; Ncor= a 0 0 0 0 0 16.0587 15.9703 0 51.6077 88.7441 1.01322 68.2979 95.3331 89.3795 42.126 16.4146 0 c 0 0 0 0 0 26.7349 13.359 51.0458 40.0092 2.48815 0 0.668693 0.466695 6.88146 24.2782 38.2117 0 g 0 0 0 0 0 34.4751 61.7647 0 3.55994 8.76777 0 1.00304 0 0 16.5917 20.0623 0 t 0 0 0 0 0 22.7313 8.90599 48.9542 4.82315 0 98.9868 30.0304 4.20025 3.73906 17.0041 25.3114 0

M05131_2.00_rc_shift5 (CDX4_rc)
; positions_6nt_m3 versus M05131_2.00_rc (CDX4_rc); m=63/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.68949; -----kGCmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 13.5135 2.36453 0 51.5252 100 0 98.4791 96.2825 97.125 54.1086 9.90991 0 c 0 0 0 0 0 19.8198 19.9015 80.0515 44.0981 0 0 1.52091 0 2 23.1894 55.3411 0 g 0 0 0 0 0 41.3127 76.5517 0 0.132626 0 0 0 0 0 10.585 17.6319 0 t 0 0 0 0 0 25.3539 1.18227 19.9485 4.24403 0 100 0 3.71747 0.875 12.117 17.1171 0

M05201_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m3 versus M05201_2.00_rc (HOXB13_rc); m=64/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.686729; -----cCCmATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 21.972 4.75647 0.807409 63.2717 99.3572 0 98.4709 99.9224 99.8708 74.5946 16.8219 0 c 0 0 0 0 0 44.7723 73.516 91.7597 27.493 0 0 0 0 0 15.0965 52.3551 0 g 0 0 0 0 0 20.0828 16.0769 0 0.294744 0.411417 0 0 0 0.129232 3.35907 8.46273 0 t 0 0 0 0 0 13.1729 5.65068 7.43291 8.94056 0.231422 100 1.52905 0.0775795 0 6.94981 22.3602 0

M05289_2.00_shift6 (HOXB9,HOXC5,HOXC6)
; positions_6nt_m3 versus M05289_2.00 (HOXB9,HOXC5,HOXC6); m=65/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.685609; ------gTCRTAAAat- ; cor=; Ncor= a 0 0 0 0 0 0 22.6511 0 0 25.8427 0 79.4308 100 96.8964 65.2266 22.6384 0 c 0 0 0 0 0 0 10.1966 2.28117 100 0.24077 0 0.517464 0 2.20936 10.4462 24.8643 0 g 0 0 0 0 0 0 67.0794 0 0 73.9165 0.0542594 0.129366 0 0 7.11756 14.1694 0 t 0 0 0 0 0 0 0.0728332 97.7188 0 0 99.9457 19.9224 0 0.894266 17.2096 38.3279 0

M03781_2.00_rc_shift4 (M03781_2.00_rc)
; positions_6nt_m3 versus M03781_2.00_rc; m=66/246; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.683272; ----rgGyMATAAAay- ; cor=; Ncor= a 0 0 0 0 31.0653 23.6664 20.877 0.316355 25.9129 92.3276 0 99.6273 99.405 99.5623 53.0699 23.0676 0 c 0 0 0 0 15.0533 11.0271 1.94934 37.5243 72.1701 0 0.0280505 0 0 0.0884626 20.5144 30.3858 0 g 0 0 0 0 38.0845 44.5416 77.0511 0.0957771 0.590618 7.67238 0 0.0372717 0 0.0372474 6.85995 19.6119 0 t 0 0 0 0 15.7969 20.7649 0.122509 62.0636 1.32636 0 99.9719 0.335445 0.595017 0.311947 19.5558 26.9348 0

M05108_2.00_shift6 (HOXC5,HOXC6,HOXD9)
; positions_6nt_m3 versus M05108_2.00 (HOXC5,HOXC6,HOXD9); m=67/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.683108; ------gTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 24.0557 0.203179 0.991135 23.4617 0.00621736 83.4873 99.4743 99.1676 61.5994 22.017 0 c 0 0 0 0 0 0 11.2474 3.6871 99.0089 0 0 0 0.0371103 0.147984 12.7274 33.3396 0 g 0 0 0 0 0 0 64.6969 0 0 76.5383 0 0 0.0185552 0.0801578 7.75978 14.1081 0 t 0 0 0 0 0 0 0 96.1097 0 0 99.9938 16.5127 0.470064 0.604267 17.9134 30.5353 0

M00473_2.00_rc_shift6 (M00473_2.00_rc)
; positions_6nt_m3 versus M00473_2.00_rc; m=68/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.68272; ------cyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 19.4856 13.1413 30.013 50.6222 8.03624 59.2412 77.9309 70.809 37.5845 0 0 c 0 0 0 0 0 0 42.0844 35.0145 38.154 3.47082 9.06083 5.82184 3.72782 10.5908 21.9023 0 0 g 0 0 0 0 0 0 24.2806 8.21337 6.7641 38.2594 1.94247 7.78047 5.96448 6.17177 16.0642 0 0 t 0 0 0 0 0 0 14.1495 43.6308 25.0689 7.64758 80.9605 27.1565 12.3768 12.4284 24.449 0 0

M05072_2.00_rc_shift5 (HOXC13_rc)
; positions_6nt_m3 versus M05072_2.00_rc (HOXC13_rc); m=69/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.682607; -----vsCmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 25.2271 6.89233 0 66.8537 100 0 99.1678 100 100 64.1256 6.78322 0 c 0 0 0 0 0 31.4465 58.3197 86.9301 25.9 0 0 0.832178 0 0 23.1839 58.1119 0 g 0 0 0 0 0 30.6778 28.4666 0 0.233754 0 0 0 0 0 3.5426 13.6364 0 t 0 0 0 0 0 12.6485 6.32137 13.0699 7.01262 0 100 0 0 0 9.14798 21.4685 0

M03206_2.00_shift6 (HOXD12)
; positions_6nt_m3 versus M03206_2.00 (HOXD12); m=70/246; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.68227; ------gYaATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 9.65944 0.627178 67.518 92.9666 11.3384 84.647 99.23 91.6444 75.5311 0 0 c 0 0 0 0 0 0 19.257 27.4564 14.6693 4.95942 0.767263 0.574713 0 4.53333 8.13187 0 0 g 0 0 0 0 0 0 63.839 0.0696864 16.8304 1.62308 0 0.246305 0 1.51111 7.98535 0 0 t 0 0 0 0 0 0 7.24458 71.8467 0.982318 0.450857 87.8943 14.532 0.769971 2.31111 8.35165 0 0

M00295_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m3 versus M00295_2.00_rc (HOXD13_rc); m=71/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.681041; ------syhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 22.0709 14.9918 31.8881 54.975 3.48303 55.5205 74.4062 65.4176 36.2227 0 0 c 0 0 0 0 0 0 36.0267 35.7842 32.8592 4.74399 9.09663 6.46726 3.12533 12.0708 21.9702 0 0 g 0 0 0 0 0 0 25.3876 10.4594 8.34976 33.344 1.11394 10.9874 6.35689 7.62011 17.2823 0 0 t 0 0 0 0 0 0 16.5148 38.7645 26.9029 6.93706 86.3064 27.0247 16.1116 14.8915 24.5248 0 0

M05331_2.00_shift6 (HOXC5,HOXC6,HOXC9)
; positions_6nt_m3 versus M05331_2.00 (HOXC5,HOXC6,HOXC9); m=72/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.680629; ------GTCGTAAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 20.0804 0 0 21.4744 0.0321295 88.1259 100 99.9228 69.1295 20.951 0 c 0 0 0 0 0 0 8.13008 0.937022 100 0 0.0321295 0 0 0.0771555 9.04319 32.411 0 g 0 0 0 0 0 0 71.7895 0 0 78.5256 0.070685 0 0 0 6.07624 14.0982 0 t 0 0 0 0 0 0 0 99.063 0 0 99.8651 11.8741 0 0 15.7511 32.5397 0

M03135_2.00_rc_shift6 (HOXC12_rc)
; positions_6nt_m3 versus M03135_2.00_rc (HOXC12_rc); m=73/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.679994; ------gyAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 18.1119 1.02681 74.4832 89.3568 11.6416 84.6756 97.574 97.3543 77.8879 0 0 c 0 0 0 0 0 0 11.7285 38.5625 11.9509 1.18832 0 1.12607 0.0846262 1.12581 8.57915 0 0 g 0 0 0 0 0 0 66.5064 0.34227 11.025 7.98243 0.0510595 0.709914 0.0564175 0.168871 5.56181 0 0 t 0 0 0 0 0 0 3.65314 60.0685 2.54091 1.47249 88.3074 13.4884 2.28491 1.35097 7.97118 0 0

M00299_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m3 versus M00299_2.00_rc (HOXD13_rc); m=74/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.678685; ------syhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 21.8939 14.6424 31.4466 53.0003 5.01695 55.227 74.4324 66.2348 36.427 0 0 c 0 0 0 0 0 0 36.097 36.3765 32.73 5.42109 9.80432 6.62898 2.80076 12.2216 21.8742 0 0 g 0 0 0 0 0 0 25.951 10.7394 8.48494 34.4772 0.164117 11.2622 6.48759 6.91164 17.0357 0 0 t 0 0 0 0 0 0 16.058 38.2416 27.3384 7.10144 85.0146 26.8819 16.2793 14.6319 24.6631 0 0

M05085_2.00_shift5 (HOXC12)
; positions_6nt_m3 versus M05085_2.00 (HOXC12); m=75/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.678131; -----rGYAATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 29.9584 13.2716 0 71.8475 90.7407 0 79.5455 90.7407 96.4567 68.2451 32.2449 0 c 0 0 0 0 0 19.6949 8.02469 28.3626 19.6481 2.22222 0.809717 2.27273 0 0 13.9276 30.6122 0 g 0 0 0 0 0 33.9806 75.6173 0 8.5044 6.66667 0 0.324675 3.33333 0 6.40669 11.4286 0 t 0 0 0 0 0 16.3662 3.08642 71.6374 0 0.37037 99.1903 17.8571 5.92593 3.54331 11.4206 25.7143 0

M05399_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m3 versus M05399_2.00_rc (HOXA10,HOXC6_rc); m=76/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.677935; -----gGymATWAAac- ; cor=; Ncor= a 0 0 0 0 0 20.9528 14.7386 0.0462107 53.1972 85.4941 0 71.7175 95.2863 86.6239 41.8213 20.1572 0 c 0 0 0 0 0 22.2942 8.39869 55.037 39.4245 1.3834 0 1.2931 0 7.60913 21.3457 41.1003 0 g 0 0 0 0 0 38.3904 70.6863 0 6.02558 13.083 0 0.132626 0 0 19.9149 18.4004 0 t 0 0 0 0 0 18.3626 6.17647 44.9168 1.35268 0.0395257 100 26.8568 4.71366 5.76692 16.918 20.3421 0

M03140_2.00_rc_shift5 (HOXD11_rc)
; positions_6nt_m3 versus M03140_2.00_rc (HOXD11_rc); m=77/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.67789; -----rrymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 32.381 26.6376 7.37705 51.9802 77.2059 6.45161 68.6275 91.3043 88.9831 64.0244 0 0 c 0 0 0 0 0 5.71429 17.4672 38.5246 39.604 5.88235 5.64516 3.92157 0.869565 2.54237 13.4146 0 0 g 0 0 0 0 0 41.9048 45.8515 6.55738 5.44554 11.0294 3.22581 2.61438 5.21739 4.23729 12.8049 0 0 t 0 0 0 0 0 20 10.0437 47.541 2.9703 5.88235 84.6774 24.8366 2.6087 4.23729 9.7561 0 0

M08090_2.00_rc_shift5 (ZNF384_rc)
; positions_6nt_m3 versus M08090_2.00_rc (ZNF384_rc); m=78/246; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.677303; -----wwwmAAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 31.0847 29.9543 31.2884 43.1275 99.7404 99.2048 98.8138 99.4053 99.241 99.9113 66.7762 62.1562 c 0 0 0 0 0 16.2488 23.0835 11.3561 25.2719 0.0230013 0.115007 0.069004 0.0427168 0.0854336 0.0197154 9.55542 13.022 g 0 0 0 0 0 18.5654 16.8666 15.3715 15.5128 0.0427168 0.0624322 0.0854336 0.0492886 0.0460027 0 9.0921 9.52256 t 0 0 0 0 0 34.1011 30.0956 41.984 16.0878 0.193868 0.61775 1.03177 0.502744 0.627608 0.069004 14.5763 15.2992

M05082_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M05082_2.00_rc (HOXC11_rc); m=79/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.676509; -----ggymrTwAAah- ; cor=; Ncor= a 0 0 0 0 0 23.2558 9.93915 1.34228 41.8103 61.3924 0 54.1899 88.4498 80.8333 45.6829 32.5342 0 c 0 0 0 0 0 19.7674 22.1095 53.3557 47.2701 8.86076 1.02041 8.37989 0 13.3333 19.1523 26.0274 0 g 0 0 0 0 0 33.1395 59.0264 1.00671 6.89655 27.6371 0 2.7933 0 1.66667 17.1115 16.0959 0 t 0 0 0 0 0 23.8372 8.92495 44.2953 4.02299 2.1097 98.9796 34.6369 11.5502 4.16667 18.0534 25.3425 0

M03274_2.00_rc_shift5 (M03274_2.00_rc)
; positions_6nt_m3 versus M03274_2.00_rc; m=80/246; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.676015; -----rgTCRTwAAawt ; cor=; Ncor= a 0 0 0 0 0 25.2841 23.5294 0.133511 3.8961 25.9605 1.93906 67.9167 95.5224 90.9561 59.8131 25.4261 19.7443 c 0 0 0 0 0 15.3409 20.2703 3.73832 91.4286 0.207684 0.138504 0.416667 0 3.48837 13.5089 23.2955 15.625 g 0 0 0 0 0 43.608 55.9618 2.13618 0 73.1049 0.415512 1.80556 0.27137 0.387597 9.94053 21.3068 15.9091 t 0 0 0 0 0 15.767 0.238474 93.992 4.67532 0.726895 97.5069 29.8611 4.20624 5.16796 16.7375 29.9716 48.7216

M09674_2.00_rc_shift5 (M09674_2.00_rc)
; positions_6nt_m3 versus M09674_2.00_rc; m=81/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.674728; -----rrymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 37.2373 31.0453 0.581395 33.4908 97.093 11.5587 77.201 86.4085 87.1199 48.4407 0 0 c 0 0 0 0 0 9.75194 24.799 44.3691 52.4448 0.968992 6.87239 1.74419 3.53309 2.32558 8.5486 0 0 g 0 0 0 0 0 44.034 40.1401 0.914729 0.968992 0.968992 0.968992 6.0972 0.968992 2.32558 20.6828 0 0 t 0 0 0 0 0 8.97674 4.0155 54.1348 13.0954 0.968992 80.5999 14.9577 9.08945 8.22898 22.328 0 0

M03139_2.00_shift6 (HOXD11)
; positions_6nt_m3 versus M03139_2.00 (HOXD11); m=82/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.674379; ------rTCGTAAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 31.068 0 5.94796 22.8188 3.36134 75.7576 98.7124 95.4357 64.2458 38.0952 0 c 0 0 0 0 0 0 13.1068 0 85.5019 0 0 0 0 1.65975 8.10056 22.0779 0 g 0 0 0 0 0 0 55.8252 0 0 77.1812 0 0 0 0 7.82123 9.95671 0 t 0 0 0 0 0 0 0 100 8.55019 0 96.6387 24.2424 1.28755 2.90456 19.8324 29.8701 0

M09149_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m3 versus M09149_2.00_rc (HOXB13_rc); m=83/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.673761; -----rsyhATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 25.6 6.8 8.6 40.4 87.4 0 93.6 99.4 96.6 72.4 0 0 c 0 0 0 0 0 16.8 50 65.6 32.4 0.2 3.4 2.6 0.2 1.8 10 0 0 g 0 0 0 0 0 38.4 33 0.8 1 10 2.2 2.4 0.4 0.6 10.8 0 0 t 0 0 0 0 0 19.2 10.2 25 26.2 2.4 94.4 1.4 0 1 6.8 0 0

M05083_2.00_shift5 (HOXC12)
; positions_6nt_m3 versus M05083_2.00 (HOXC12); m=84/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.671585; -----gGYAATAAAay- ; cor=; Ncor= a 0 0 0 0 0 20.4905 12.6547 0 72.209 86.4865 0 82.7211 100 99.0228 67.6307 23.3553 0 c 0 0 0 0 0 15.5063 3.71389 26.2136 21.1401 0 0.490998 1.08844 0 0.977199 10.2336 31.25 0 g 0 0 0 0 0 48.1013 83.6314 0 5.70071 13.5135 0 0 0 0 8.45384 13.9803 0 t 0 0 0 0 0 15.9019 0 73.7864 0.950119 0 99.509 16.1905 0 0 13.6819 31.4145 0

M04977_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m3 versus M04977_2.00_rc (HOXA13_rc); m=85/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.671176; -----vCCMATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 30.8499 4.95673 0 70.7715 100 0 98.2492 99.8953 100 72.4374 15.68 0 c 0 0 0 0 0 36.8311 75.059 94.6429 29.2285 0 0 0 0 0 18.6029 60.64 0 g 0 0 0 0 0 30.4302 19.9843 0 0 0 0 1.75077 0.104712 0 2.73349 8.16 0 t 0 0 0 0 0 1.88877 0 5.35714 0 0 100 0 0 0 6.22627 15.52 0

M09432_2.00_shift7 (TBP,TBPL2)
; positions_6nt_m3 versus M09432_2.00 (TBP,TBPL2); m=86/246; ncol2=10; w=0; offset=1; strand=D; shift=7; score= 0.6681; -------mTATAAAars ; cor=; Ncor= a 0 0 0 0 0 0 0 28.1879 4.69799 81.2081 4.69799 85.906 71.1409 77.1812 59.7315 39.5973 7.38255 c 0 0 0 0 0 0 0 54.3624 8.72483 0 4.69799 6.04027 3.3557 2.01342 0.671141 3.3557 30.8725 g 0 0 0 0 0 0 0 15.4362 8.72483 4.69799 4.02685 4.02685 2.68456 19.4631 15.4362 49.6644 57.047 t 0 0 0 0 0 0 0 2.01342 77.8523 14.094 86.5772 4.02685 22.8188 1.34228 24.1611 7.38255 4.69799

M00198_2.00_shift7 (M00198_2.00)
; positions_6nt_m3 versus M00198_2.00; m=87/246; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.667273; -------aswTcAAAgr ; cor=; Ncor= a 0 0 0 0 0 0 0 48.7867 10.5157 63.7879 12.7896 11.7054 87.5401 81.883 72.8316 17.9802 26.7968 c 0 0 0 0 0 0 0 12.903 36.7034 4.46185 3.66428 66.6899 1.39389 4.64268 1.97023 17.8013 18.6955 g 0 0 0 0 0 0 0 19.4424 40.5635 2.21569 1.38907 13.5998 1.36629 8.54453 10.7849 56.2199 40.3779 t 0 0 0 0 0 0 0 18.8678 12.2175 29.5346 82.157 8.0049 9.69972 4.92977 14.4133 7.99863 14.1298

M03780_2.00_rc_shift4 (M03780_2.00_rc)
; positions_6nt_m3 versus M03780_2.00_rc; m=88/246; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.666745; ----rrGymATAAAac- ; cor=; Ncor= a 0 0 0 0 33.9388 32.221 9.80551 0.066211 49.8478 99.6049 0 99.7081 99.2998 98.8732 63.7915 22.8987 0 c 0 0 0 0 13.8922 8.8651 3.84263 67.8449 48.8544 0.144241 0 0 0.0125043 0.476235 16.1242 33.6429 0 g 0 0 0 0 41.3492 38.8195 83.1479 0 0.120834 0.250854 0 0 0 0.143182 6.4377 19.524 0 t 0 0 0 0 10.8197 20.0944 3.20394 32.0889 1.17695 0 100 0.29192 0.687736 0.507361 13.6467 23.9344 0

M04983_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m3 versus M04983_2.00_rc (HOXA13_rc); m=89/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.663806; -----rcCAATAAAmy- ; cor=; Ncor= a 0 0 0 0 0 31.8367 18.2519 0 73.1343 92.1053 0 83.6177 100 98 62.6598 17.551 0 c 0 0 0 0 0 22.8571 62.982 75.6173 8.65672 7.89474 0 0 0 2 25.8312 40.8163 0 g 0 0 0 0 0 26.5306 17.4807 0 0 0 0 0 0 0 7.92839 10.6122 0 t 0 0 0 0 0 18.7755 1.28535 24.3827 18.209 0 100 16.3823 0 0 3.58056 31.0204 0

M09580_2.00_rc_shift5 (M09580_2.00_rc)
; positions_6nt_m3 versus M09580_2.00_rc; m=90/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.663677; -----ggyCATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 23.2 24.5 2.2 20.9 72.5 0.1 98 94.7 95.4 44.6 0 0 c 0 0 0 0 0 13.4 14.8 53.9 75.6 2.1 0.1 0.1 0.1 4.2 12.9 0 0 g 0 0 0 0 0 47.4 60.6 2.1 2.8 24.5 0.2 1.2 0.4 0.3 12.1 0 0 t 0 0 0 0 0 16 0.1 41.8 0.7 0.9 99.6 0.7 4.8 0.1 30.4 0 0

M00200_2.00_shift7 (M00200_2.00)
; positions_6nt_m3 versus M00200_2.00; m=91/246; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.663548; -------aswTcAAAgr ; cor=; Ncor= a 0 0 0 0 0 0 0 48.7159 10.3241 63.9521 11.8677 10.7632 87.4585 80.9823 75.8453 18.2254 28.4337 c 0 0 0 0 0 0 0 13.4101 36.7628 4.17091 3.50372 67.7712 1.71801 5.89574 1.40312 17.5107 18.3124 g 0 0 0 0 0 0 0 19.221 41.0375 2.26627 1.21388 13.4118 1.32467 8.62126 9.96118 57.5592 40.3494 t 0 0 0 0 0 0 0 18.653 11.8756 29.6107 83.4147 8.05374 9.49879 4.50069 12.7904 6.70473 12.9045

M03248_2.00_rc_shift5 (M03248_2.00_rc)
; positions_6nt_m3 versus M03248_2.00_rc; m=92/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.655752; -----kCTmrTAAAah- ; cor=; Ncor= a 0 0 0 0 0 18.4104 8.16044 2.39062 27.3458 39.9463 0 78.7189 97.6763 95.9284 61.5679 28.0616 0 c 0 0 0 0 0 22.844 73.0883 12.9454 59.4312 0 0.0539957 0.276655 0.132031 0.363071 15.9288 35.0906 0 g 0 0 0 0 0 32.4953 16.9532 1.24041 1.12468 59.3557 0.0809935 0.595871 0 1.06328 7.04061 10.1108 0 t 0 0 0 0 0 26.2503 1.79806 83.4235 12.0983 0.697987 99.865 20.4086 2.19171 2.64523 15.4627 26.737 0

M05333_2.00_shift6 (HOXC5,HOXC6,HOXC9)
; positions_6nt_m3 versus M05333_2.00 (HOXC5,HOXC6,HOXC9); m=93/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.655515; ------GTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 23.8436 0.840797 0.964506 15.7774 0.00973805 82.9469 99.6942 98.745 57.4193 21.9322 0 c 0 0 0 0 0 0 5.84449 5.31895 99.0355 0 0 0 0.00970921 0.331779 14.0473 31.194 0 g 0 0 0 0 0 0 70.3119 0 0 84.2226 0 0.0363519 0 0 10.1664 16.1424 0 t 0 0 0 0 0 0 0 93.8402 0 0 99.9903 17.0167 0.296131 0.92321 18.3671 30.7314 0

M03209_2.00_rc_shift6 (HOXD12_rc)
; positions_6nt_m3 versus M03209_2.00_rc (HOXD12_rc); m=94/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.653862; ------GyrATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 12.7279 3.31256 60.4093 87.2114 8.31376 68.6161 93.84 90.9047 58.1947 0 0 c 0 0 0 0 0 0 13.9933 34.2079 12.7598 3.73961 0.892438 1.6709 0.496771 4.5717 15.2187 0 0 g 0 0 0 0 0 0 70.3015 0.524762 26.8308 7.84857 2.0667 3.55975 0 1.49182 12.2304 0 0 t 0 0 0 0 0 0 2.9773 61.9547 0 1.20037 88.7271 26.1533 5.66319 3.03176 14.3561 0 0

M00248_2.00_rc_shift6 (WT1_rc)
; positions_6nt_m3 versus M00248_2.00_rc (WT1_rc); m=95/246; ncol2=13; w=0; offset=0; strand=R; shift=6; score=0.653748; ------tamATATAAtA ; cor=; Ncor= a 0 0 0 0 0 0 22.5797 40.0671 25.0544 85.1835 12.1696 89.532 20.5397 99.8774 72.5594 14.775 70.0218 c 0 0 0 0 0 0 22.5797 19.9776 44.8494 4.93882 2.52855 0.0408538 9.68195 0.0408538 2.46114 5.06322 9.99275 g 0 0 0 0 0 0 22.5797 19.9776 15.0481 4.93882 2.52855 10.3863 0.0408538 0.0408538 2.46114 14.9523 9.99275 t 0 0 0 0 0 0 32.2609 19.9776 15.0481 4.93882 82.7733 0.0408538 69.7375 0.0408538 22.5183 65.2095 9.99275

M05113_2.00_shift6 (HOXC6,HOXD10)
; positions_6nt_m3 versus M05113_2.00 (HOXC6,HOXD10); m=96/246; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.653371; ------rTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 31.9603 0 0 20.9404 0 79.1491 100 96.8336 48.0885 18.4549 0 c 0 0 0 0 0 0 10.0221 1.60869 100 0 0 0 0 1.52385 19.6757 37.4412 0 g 0 0 0 0 0 0 58.0177 0 0 79.0596 0 0 0 0 10.2998 17.3718 0 t 0 0 0 0 0 0 0 98.3913 0 0 100 20.8509 0 1.64259 21.9361 26.7321 0

M03284_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03284_2.00_rc (HOXC5,HOXC6_rc); m=97/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.651435; ------stCrTWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 24.5989 5.09804 12.0332 27.1318 3.44828 74.5614 90.9091 96.0452 55.8824 0 0 c 0 0 0 0 0 0 29.6791 20.3922 70.5394 2.71318 3.44828 0 2.13904 3.9548 16.4706 0 0 g 0 0 0 0 0 0 45.4545 7.84314 0 65.8915 9.35961 0 1.60428 0 12.3529 0 0 t 0 0 0 0 0 0 0.26738 66.6667 17.4274 4.26357 83.7438 25.4386 5.34759 0 15.2941 0 0

M09197_2.00_rc_shift5 (M09197_2.00_rc)
; positions_6nt_m3 versus M09197_2.00_rc; m=98/246; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.651339; -----rgcmATAAATCw ; cor=; Ncor= a 0 0 0 0 0 27.2 20.2 9.4 33 74 0.4 78.6 95.6 94.8 11.6 10.8 62 c 0 0 0 0 0 12 16 64.4 46.8 3.8 2 8.4 2.2 2 1.6 70.2 11.2 g 0 0 0 0 0 41.4 56.2 5.4 3.2 18.2 1.4 4.6 0.6 1 4.6 0.6 1.8 t 0 0 0 0 0 19.4 7.6 20.8 17 4 96.2 8.4 1.6 2.2 82.2 18.4 25

M00410_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00410_2.00_rc (HOXC5,HOXC6_rc); m=99/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.650603; -----rgymrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 27.57 24.4406 15.758 36.7506 59.6861 9.81883 52.2927 74.3375 65.6214 42.7731 0 0 c 0 0 0 0 0 18.6665 21.0362 36.8681 38.6348 8.92716 8.2838 5.2955 6.16332 10.7392 16.8763 0 0 g 0 0 0 0 0 33.3391 41.1098 9.00111 10.9589 26.8187 7.8798 7.00663 8.92285 9.43005 16.8763 0 0 t 0 0 0 0 0 20.4244 13.4133 38.3728 13.6557 4.56811 74.0176 35.4051 10.5763 14.2094 23.4744 0 0

M03581_2.00_shift8 (CPEB1)
; positions_6nt_m3 versus M03581_2.00 (CPEB1); m=100/246; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.649919; --------aATAAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 52.5709 82.7471 0.557007 98.1526 94.9235 93.8347 99.42 51.6227 0 c 0 0 0 0 0 0 0 0 5.13649 1.33908 0 0 0 0.104275 0 9.00192 0 g 0 0 0 0 0 0 0 0 24.9502 13.7299 0.433228 1.26116 0.599947 3.30422 0.58003 24.9787 0 t 0 0 0 0 0 0 0 0 17.3424 2.18391 99.0098 0.58627 4.47653 2.75678 0 14.3967 0

M01245_2.00_rc_shift5 (HOXC6_rc)
; positions_6nt_m3 versus M01245_2.00_rc (HOXC6_rc); m=101/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.647695; -----rrymATwAaa-- ; cor=; Ncor= a 0 0 0 0 0 29.3248 25.0798 14.0728 46.7929 76.0399 5.28815 55.7886 75.9063 67.0431 47.4445 0 0 c 0 0 0 0 0 17.089 20.5336 32.5978 32.9744 6.89819 6.65566 5.26757 4.80424 11.8857 16.4374 0 0 g 0 0 0 0 0 33.7316 38.5541 6.13644 8.80862 14.1719 2.81642 4.76629 5.00031 5.96158 15.6358 0 0 t 0 0 0 0 0 19.8546 15.8325 47.193 11.4242 2.89001 85.2398 34.1776 14.2891 15.1097 20.4823 0 0

M09575_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M09575_2.00_rc (HOXC5,HOXC6_rc); m=102/246; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.645948; -----rgycATaAATCw ; cor=; Ncor= a 0 0 0 0 0 27.5 20.7 3.4 24.1 79.4 0.1 62.1 93.1 86.2 13.7 6.9 55.3 c 0 0 0 0 0 10.4 20.7 58.6 58.6 3.4 0.1 24.1 3.4 3.4 0.1 75.9 13.7 g 0 0 0 0 0 51.7 55.2 10.3 0.1 17.1 3.3 6.9 0.1 0.1 6.8 6.9 3.4 t 0 0 0 0 0 10.4 3.4 27.7 17.2 0.1 96.5 6.9 3.4 10.3 79.4 10.3 27.6

M08283_2.00_rc_shift6 (MYNN_rc)
; positions_6nt_m3 versus M08283_2.00_rc (MYNN_rc); m=103/246; ncol2=12; w=0; offset=0; strand=R; shift=6; score=0.645815; ------AaAwTAArAGy ; cor=; Ncor= a 0 0 0 0 0 0 72.0912 67.3742 73.6635 65.8019 1.02201 99.4497 89.0723 63.6006 98.5063 0.0786164 2.27987 c 0 0 0 0 0 0 6.99686 10.1415 8.56918 1.33648 1.96541 0.0786164 1.65094 1.02201 0.0786164 0.707547 34.6698 g 0 0 0 0 0 0 12.3428 12.0283 13.2862 6.68239 3.22327 0.0786164 7.94025 30.8962 1.33648 98.1918 4.16667 t 0 0 0 0 0 0 8.56918 10.456 4.48113 26.1792 93.7893 0.393082 1.33648 4.48113 0.0786164 1.02201 58.8836

M09130_2.00_shift7 (HOXA9,HOXC5,HOXC6)
; positions_6nt_m3 versus M09130_2.00 (HOXA9,HOXC5,HOXC6); m=104/246; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.644309; -------wCATAAAyyr ; cor=; Ncor= a 0 0 0 0 0 0 0 30.7692 9.89011 100 0 90.1099 100 91.2088 9.89011 10.989 60.4396 c 0 0 0 0 0 0 0 9.89011 80.2198 0 0 0 0 0 30.7692 39.5604 9.89011 g 0 0 0 0 0 0 0 17.5824 0 0 0 0 0 0 8.79121 9.89011 29.6703 t 0 0 0 0 0 0 0 41.7582 9.89011 0 100 9.89011 0 8.79121 50.5495 39.5604 0

M09170_2.00_shift7 (HOXC6)
; positions_6nt_m3 versus M09170_2.00 (HOXC6); m=105/246; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.644309; -------wCATAAAyyr ; cor=; Ncor= a 0 0 0 0 0 0 0 30.7692 9.89011 100 0 90.1099 100 91.2088 9.89011 10.989 60.4396 c 0 0 0 0 0 0 0 9.89011 80.2198 0 0 0 0 0 30.7692 39.5604 9.89011 g 0 0 0 0 0 0 0 17.5824 0 0 0 0 0 0 8.79121 9.89011 29.6703 t 0 0 0 0 0 0 0 41.7582 9.89011 0 100 9.89011 0 8.79121 50.5495 39.5604 0

M03782_2.00_rc_shift4 (M03782_2.00_rc)
; positions_6nt_m3 versus M03782_2.00_rc; m=106/246; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.643589; ----vgGYMATAAAms- ; cor=; Ncor= a 0 0 0 0 31.2432 23.4868 10.1975 0 29.236 93.9394 0 96.5023 95.4341 94.9742 32.5118 15.1197 0 c 0 0 0 0 25.8065 20.5147 12.8137 71.8677 69.4288 1.02145 0 0 0 2.37522 37.2236 41.0805 0 g 0 0 0 0 33.5629 32.2581 73.6519 0 0 5.03916 0 0.0349773 0 0.550775 10.9822 25.6345 0 t 0 0 0 0 9.38746 23.7405 3.33689 28.1323 1.33517 0 100 3.46275 4.56589 2.09983 19.2823 18.1653 0

M00509_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m3 versus M00509_2.00_rc (HOXC6_rc); m=107/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.642091; ------gymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 24.7161 19.3063 31.7611 44.8338 17.2335 41.2167 51.0367 45.4306 0 0 0 c 0 0 0 0 0 0 24.2267 30.2783 31.7611 14.4828 17.9368 14.4233 13.0991 17.222 0 0 0 g 0 0 0 0 0 0 32.3772 16.9528 17.783 25.6095 16.5577 15.3152 16.3225 14.1002 0 0 0 t 0 0 0 0 0 0 18.68 33.4627 18.6948 15.0739 48.272 29.0449 19.5416 23.2472 0 0 0

M01660_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M01660_2.00 (ARID3B,ARID3C); m=108/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.638918; -------wwATyAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 26.9597 34.5989 98.0846 0.979404 24.5593 78.6967 73.3314 55.7268 36.5112 0 c 0 0 0 0 0 0 0 19.9722 9.24259 0.0894416 1.32206 30.6027 6.02309 7.13484 7.69416 21.0651 0 g 0 0 0 0 0 0 0 22.9735 23.8987 1.74339 1.23268 3.93964 8.21204 7.65217 14.5918 13.703 0 t 0 0 0 0 0 0 0 30.0945 32.2598 0.082565 96.4659 40.8983 7.06817 11.8816 21.9872 28.7207 0

M02081_2.00_rc_shift7 (M02081_2.00_rc)
; positions_6nt_m3 versus M02081_2.00_rc; m=109/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.637873; -------ymATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.41741 56.0196 75.7832 1.91671 87.2453 93.6131 93.0367 55.7574 0 0 c 0 0 0 0 0 0 0 29.9047 25.5318 1.27993 1.27993 0.0063678 0.0063678 0.701194 13.466 0 0 g 0 0 0 0 0 0 0 0.943572 0.00709019 9.55807 0.0063678 0.643148 1.27993 1.39545 4.81546 0 0 t 0 0 0 0 0 0 0 60.7343 18.4416 13.3788 96.797 12.1052 5.10061 4.8667 25.9612 0 0

M03772_2.00_shift5 (HOXC5,HOXC6)
; positions_6nt_m3 versus M03772_2.00 (HOXC5,HOXC6); m=110/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.636946; -----rGTCrTAAAah- ; cor=; Ncor= a 0 0 0 0 0 36.0139 22.577 1.15845 1.52626 32.6461 0.115851 79.3153 99.1196 96.6328 58.7626 25.4031 0 c 0 0 0 0 0 7.80268 7.78417 2.96485 98.4065 0 0.14311 0.184137 0.155763 1.34689 11.9846 30.0355 0 g 0 0 0 0 0 39.3618 69.6389 0.0850841 0.0672359 67.3539 0 0 0.0744955 0.323518 7.1787 10.5083 0 t 0 0 0 0 0 16.8215 0 95.7916 0 0 99.741 20.5006 0.650142 1.69682 22.0741 34.053 0

M02646_2.00_shift8 (M02646_2.00)
; positions_6nt_m3 versus M02646_2.00; m=111/246; ncol2=9; w=0; offset=2; strand=D; shift=8; score=0.636008; --------sATcAAAgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5.6 78.2 9.9 11.2 92.9 91.5 83.7 15.9 23.8 c 0 0 0 0 0 0 0 0 48.1 1.7 2.2 67.5 1 2.9 0.3 14.3 22.8 g 0 0 0 0 0 0 0 0 36.6 0 0 16.5 0.4 3.2 10.3 66.2 33.7 t 0 0 0 0 0 0 0 0 9.7 19.4 87.6 4.8 5.8 2.4 5.6 3.6 19.7

M09140_2.00_shift7 (CDX1)
; positions_6nt_m3 versus M09140_2.00 (CDX1); m=112/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.635974; -------mCaTAAAt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.1111 0 62.724 3.22581 75.2688 93.5484 87.0968 24.1935 0 0 c 0 0 0 0 0 0 0 33.9606 79.3907 3.22581 16.129 12.9032 3.22581 9.67742 4.83871 0 0 g 0 0 0 0 0 0 0 9.94624 0 9.319 0 5.37634 0 0 24.3728 0 0 t 0 0 0 0 0 0 0 19.9821 20.6093 24.7312 80.6452 6.45161 3.22581 3.22581 46.595 0 0

M09186_2.00_shift7 (M09186_2.00)
; positions_6nt_m3 versus M09186_2.00; m=113/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.635974; -------mCaTAAAt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.1111 0 62.724 3.22581 75.2688 93.5484 87.0968 24.1935 0 0 c 0 0 0 0 0 0 0 33.9606 79.3907 3.22581 16.129 12.9032 3.22581 9.67742 4.83871 0 0 g 0 0 0 0 0 0 0 9.94624 0 9.319 0 5.37634 0 0 24.3728 0 0 t 0 0 0 0 0 0 0 19.9821 20.6093 24.7312 80.6452 6.45161 3.22581 3.22581 46.595 0 0

M00389_2.00_rc_shift5 (M00389_2.00_rc)
; positions_6nt_m3 versus M00389_2.00_rc; m=114/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.63367; -----scyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 22.897 19.1994 13.2557 32.4192 55.2686 4.6339 62.2496 82.2278 75.8821 40.2869 0 0 c 0 0 0 0 0 25.3051 41.8829 35.6741 36.9199 2.36838 5.89084 3.97948 1.08274 8.66403 20.0059 0 0 g 0 0 0 0 0 27.9665 24.4072 7.05986 5.41272 35.595 0.0504586 6.627 4.39072 4.21724 15.2721 0 0 t 0 0 0 0 0 23.8314 14.5106 44.0104 25.2481 6.768 89.4248 27.1439 12.2987 11.2366 24.4352 0 0

M00300_2.00_rc_shift7 (HOXD13_rc)
; positions_6nt_m3 versus M00300_2.00_rc (HOXD13_rc); m=115/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.631513; -------yaATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5.66767 56.925 72.5366 1.95404 85.0493 94.7871 91.6482 59.3923 0 0 c 0 0 0 0 0 0 0 27.3576 24.8176 0.659958 0.655674 0.00649182 0.00649182 1.39545 11.8864 0 0 g 0 0 0 0 0 0 0 0.0094304 0.00729714 16.3421 0.00649182 0.655674 0.00649182 1.39545 7.92755 0 0 t 0 0 0 0 0 0 0 66.9653 18.2501 10.4613 97.3838 14.2885 5.19995 5.56096 20.7937 0 0

M05394_2.00_shift5 (HOXA10,HOXC6)
; positions_6nt_m3 versus M05394_2.00 (HOXA10,HOXC6); m=116/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.631371; -----rGTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 25.52 22.7868 0 0 23.0603 0 90.2244 99.9819 99.4961 71.3539 27.5391 0 c 0 0 0 0 0 12.3078 5.91914 0.387387 100 0 0.00904323 0 0 0 9.95741 31.9436 0 g 0 0 0 0 0 51.0219 71.2941 0 0 76.9397 0 0 0.0180848 0 4.86577 11.4226 0 t 0 0 0 0 0 11.1503 0 99.6126 0 0 99.991 9.7756 0 0.503914 13.8229 29.0947 0

M03131_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M03131_2.00_rc (HOXC11_rc); m=117/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.630952; -----rrTCrTwAAaw- ; cor=; Ncor= a 0 0 0 0 0 31.3037 27.8155 2.07881 7.85576 32.6155 0.233055 64.9797 94.1739 91.1419 59.2233 32.3575 0 c 0 0 0 0 0 12.3927 12.3433 4.39262 82.4855 0.40218 0.252476 0.656751 0.147032 2.68588 11.9394 20.9602 0 g 0 0 0 0 0 36.2412 58.944 0.903832 0.579524 66.4764 0 0.367008 0.496232 1.54749 8.46047 13.1538 0 t 0 0 0 0 0 20.0625 0.897274 92.6247 9.0792 0.505968 99.5145 33.9965 5.18287 4.62469 20.3768 33.5285 0

M05116_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m3 versus M05116_2.00 (HOXC6,HOXD10); m=118/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.629469; -----rGTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 27.0829 17.8925 0 0.684199 21.507 0 92.2909 100 99.0828 76.1725 28.3315 0 c 0 0 0 0 0 11.3671 6.6894 0.853424 99.3158 0.0168947 0 0 0 0.767918 7.59265 31.2164 0 g 0 0 0 0 0 51.6685 75.4181 0.0426712 0 78.4761 3.14846 0.35764 0 0 4.29649 10.3983 0 t 0 0 0 0 0 9.88159 0 99.1039 0 0 96.8515 7.35148 0 0.149317 11.9383 30.0538 0

M00554_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00554_2.00_rc (HOXC5,HOXC6_rc); m=119/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.626466; -----rgymrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 27.2318 23.6474 15.7584 34.0063 58.6239 5.69668 51.0046 76.869 64.1576 37.1455 0 0 c 0 0 0 0 0 20.1738 23.1791 35.4234 40.7129 9.69046 6.04895 7.04217 5.65252 13.6173 19.9822 0 0 g 0 0 0 0 0 33.5953 40.5791 8.47713 8.72809 26.8735 0.0298935 3.7883 5.27038 7.32536 17.7226 0 0 t 0 0 0 0 0 18.999 12.5944 40.3411 16.5526 4.81214 88.2245 38.1649 12.2081 14.8997 25.1496 0 0

M03775_2.00_rc_shift2 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M03775_2.00_rc (HOXC5,HOXC6_rc); m=120/246; ncol2=14; w=-4; offset=-4; strand=R; shift=2; score=0.626437; --aAAAsmCATwAAAh- ; cor=; Ncor= a 0 0 62.0758 78.5266 81.8627 81.5961 5.42477 46.9101 0.19685 99.0119 2.11538 62.7639 96.9052 98.2353 75.6798 31 0 c 0 0 9.18164 7.83699 9.47712 2.11726 51.2794 31.0861 98.622 0.197628 1.53846 2.4952 0.193424 0.588235 11.7825 31.6 0 g 0 0 16.3673 6.42633 1.14379 10.5863 32.7533 11.8914 0 0 0 1.34357 0.773694 1.17647 2.87009 8.8 0 t 0 0 12.3752 7.21003 7.51634 5.70033 10.5425 10.1124 1.1811 0.790514 96.3462 33.3973 2.12766 0 9.66767 28.6 0

M01658_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M01658_2.00 (ARID3B,ARID3C); m=121/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.626283; -------twAThAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.9746 36.7305 99.9306 1.14163 26.0879 72.5817 63.6466 48.9639 31.0029 0 c 0 0 0 0 0 0 0 22.825 11.5145 0.0100969 1.06445 31.2329 5.6673 10.2098 10.709 22.5127 0 g 0 0 0 0 0 0 0 22.5979 22.2782 0.0207435 1.01253 4.91097 10.2237 12.2233 17.6561 18.4318 0 t 0 0 0 0 0 0 0 29.6025 29.4769 0.0385606 96.7814 37.7683 11.5272 13.9203 22.6709 28.0526 0

M00367_2.00_rc_shift5 (NR1H2,NR1H4_rc)
; positions_6nt_m3 versus M00367_2.00_rc (NR1H2,NR1H4_rc); m=122/246; ncol2=13; w=-1; offset=-1; strand=R; shift=5; score=0.625311; -----tkwtATAAtAws ; cor=; Ncor= a 0 0 0 0 0 22.5715 20.2323 39.2195 24.5374 73.073 0.0270709 99.9188 80.4586 21.9158 76.0942 25.5241 19.8486 c 0 0 0 0 0 22.5715 20.2323 10.4805 16.4668 2.43408 9.94694 0.0270709 10.1305 2.4556 14.3162 14.5466 30.8261 g 0 0 0 0 0 22.5715 29.9464 20.1946 5.17847 12.5375 0.0270709 0.0270709 0.0270709 13.4331 4.7948 14.5466 29.4767 t 0 0 0 0 0 32.2856 29.5891 30.1053 53.8173 11.9555 89.9989 0.0270709 9.38387 62.1955 4.7948 45.3828 19.8486

M00390_2.00_rc_shift5 (M00390_2.00_rc)
; positions_6nt_m3 versus M00390_2.00_rc; m=123/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.624247; -----rsymrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 26.117 24.7986 15.076 29.9041 49.3099 12.0043 52.691 76.2537 65.5904 38.9216 0 0 c 0 0 0 0 0 20.1375 25.5538 28.3068 47.3703 7.6762 7.06578 5.0251 3.36715 9.71266 20.1167 0 0 g 0 0 0 0 0 33.2012 38.5049 8.52585 8.31446 38.0205 2.25977 4.78002 7.12825 9.61601 16.6357 0 0 t 0 0 0 0 0 20.5443 11.1427 48.0914 14.4111 4.99344 78.6702 37.5039 13.2509 15.0809 24.3261 0 0

M02092_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m3 versus M02092_2.00_rc (HOXB13_rc); m=124/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.623861; -----scyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 24.2336 19.7551 15.1577 32.7507 57.3867 5.11546 55.7684 72.7356 69.2102 37.1868 0 0 c 0 0 0 0 0 26.5157 40.9935 39.1933 33.4123 2.38646 10.7217 6.89784 6.15233 11.2138 21.6706 0 0 g 0 0 0 0 0 27.3233 24.6164 7.99252 6.48132 34.1176 0.0408548 8.50971 8.47254 7.66871 16.7091 0 0 t 0 0 0 0 0 21.9274 14.635 37.6565 27.3557 6.1093 84.122 28.824 12.6395 11.9073 24.4335 0 0

M00493_2.00_rc_shift6 (M00493_2.00_rc)
; positions_6nt_m3 versus M00493_2.00_rc; m=125/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.623286; ------vymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 25.9281 18.0638 29.6012 38.4068 19.0588 44.3489 58.0384 50.5587 0 0 0 c 0 0 0 0 0 0 25.6701 27.4924 39.1662 13.7115 18.3115 13.7644 13.2117 15.5356 0 0 0 g 0 0 0 0 0 0 33.2923 14.6422 13.9826 32.7281 13.8395 12.4546 11.9545 11.8596 0 0 0 t 0 0 0 0 0 0 15.1095 39.8017 17.25 15.1536 48.7902 29.4321 16.7954 22.0461 0 0 0

M00293_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m3 versus M00293_2.00_rc (HOXD13_rc); m=126/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.622828; -----gsyhrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 23.8214 22.3966 15.1078 31.6447 54.485 3.93707 55.2895 74.4533 65.3982 35.8579 0 0 c 0 0 0 0 0 24.7936 35.8344 36.061 32.9361 4.51735 9.30393 6.31282 3.12731 11.9472 21.3183 0 0 g 0 0 0 0 0 26.5913 25.5058 10.5404 8.45341 34.0533 1.09465 10.9417 6.29762 7.61786 17.8065 0 0 t 0 0 0 0 0 24.7936 16.2632 38.2909 26.9658 6.94433 85.6643 27.456 16.1218 15.0367 25.0172 0 0

M05122_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m3 versus M05122_2.00_rc (HOXD13_rc); m=127/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.622234; -----ssCMATAAAmC- ; cor=; Ncor= a 0 0 0 0 0 12.2283 8.53018 0 72.4409 98.6595 1.60428 100 96.8421 83.4467 58.4127 16.3043 0 c 0 0 0 0 0 49.4565 48.294 100 27.5591 0 0 0 0 16.5533 39.5238 82.337 0 g 0 0 0 0 0 35.0543 43.1759 0 0 1.34048 0 0 3.15789 0 2.06349 0.815217 0 t 0 0 0 0 0 3.26087 0 0 0 0 98.3957 0 0 0 0 0.543478 0

M03783_2.00_rc_shift4 (M03783_2.00_rc)
; positions_6nt_m3 versus M03783_2.00_rc; m=128/246; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.621544; ----rgGyCrTAAAys- ; cor=; Ncor= a 0 0 0 0 26.0778 19.0942 24.9819 0 20.6491 64.782 0 99.0625 96.0121 95.3383 21.7026 15.8697 0 c 0 0 0 0 17.8759 22.6613 5.51124 49.9344 77.1602 0.0340599 0 0 0.100959 2.20551 34.6295 31.5817 0 g 0 0 0 0 34.9106 33.2576 68.963 0.157439 1.29817 35.1839 0.105042 0 0 0.601504 15.7646 30.2154 0 t 0 0 0 0 21.1356 24.9869 0.543872 49.9082 0.892495 0 99.895 0.9375 3.88693 1.85464 27.9033 22.3332 0

M00505_2.00_rc_shift5 (M00505_2.00_rc)
; positions_6nt_m3 versus M00505_2.00_rc; m=129/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.620395; -----ssyhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 23.771 20.9917 14.7959 31.594 51.668 5.55834 56.5888 78.2973 66.6261 37.3403 0 0 c 0 0 0 0 0 25.4946 38.6337 37.1273 34.2254 3.6871 10.0272 5.67353 1.52274 11.8118 20.9068 0 0 g 0 0 0 0 0 27.8955 25.1316 9.4343 7.79099 37.1454 0.0370792 9.35407 5.58739 7.83888 17.4628 0 0 t 0 0 0 0 0 22.8389 15.2431 38.6425 26.3896 7.49952 84.3774 28.3836 14.5926 13.7233 24.2902 0 0

M09158_2.00_rc_shift3 (EVX2,HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc)
; positions_6nt_m3 versus M09158_2.00_rc (EVX2,HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc); m=130/246; ncol2=13; w=-3; offset=-3; strand=R; shift=3; score=0.617566; ---rrrGymATAAAam- ; cor=; Ncor= a 0 0 0 41.8 36.8 38.2 11.2 0.8 45.2 93.8 0.2 92.2 97.8 96.4 49.4 29.8 0 c 0 0 0 19 19.6 4.8 10.6 60.6 49.6 0 0.4 2.8 0 1.4 20.8 36.2 0 g 0 0 0 25 30.8 41.4 73.6 0 0.6 5.8 1 2.2 0.8 1 18.2 17.6 0 t 0 0 0 14.2 12.8 15.6 4.6 38.6 4.6 0.4 98.4 2.8 1.4 1.2 11.6 16.4 0

M00475_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00475_2.00_rc (HOXC5,HOXC6_rc); m=131/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.617407; ------gymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 23.7811 18.1949 32.6787 50.4181 15.9948 41.1281 52.2166 45.5358 0 0 0 c 0 0 0 0 0 0 23.0782 35.5571 34.6994 13.2018 13.227 14.5369 15.4159 18.5135 0 0 0 g 0 0 0 0 0 0 37.6709 13.7514 16.0663 24.7878 12.0886 10.6621 14.8114 16.0948 0 0 0 t 0 0 0 0 0 0 15.4698 32.4967 16.5556 11.5924 58.6896 33.6729 17.5561 19.8559 0 0 0

M08131_2.00_rc_shift4 (CDX2_rc)
; positions_6nt_m3 versus M08131_2.00_rc (CDX2_rc); m=132/246; ncol2=11; w=-2; offset=-2; strand=R; shift=4; score=0.61659; ----rdGymATAAAa-- ; cor=; Ncor= a 0 0 0 0 38.3845 41.6406 19.2862 0 43.6443 100 0 100 100 100 63.4314 0 0 c 0 0 0 0 19.975 0.500939 8.51597 65.623 52.0977 0 0 0 0 0 9.39261 0 0 g 0 0 0 0 30.0564 31.4339 72.1979 0 0 0 0 0 0 0 19.5992 0 0 t 0 0 0 0 11.5842 26.4245 0 34.377 4.25798 0 100 0 0 0 7.57671 0 0

M00115_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M00115_2.00 (ARID3B,ARID3C); m=133/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.615252; -------ywATyAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.6578 37.8326 93.2211 10.9459 19.8441 70.8755 60.7308 51.9306 34.7377 0 c 0 0 0 0 0 0 0 26.7115 8.9636 2.00366 5.71426 33.3784 5.64588 10.0387 10.8039 20.2433 0 g 0 0 0 0 0 0 0 23.2219 24.6105 2.44727 9.42122 11.3351 13.8866 14.1039 18.7259 18.501 0 t 0 0 0 0 0 0 0 25.4088 28.5933 2.32792 73.9186 35.4424 9.59196 15.1265 18.5396 26.518 0

M00193_2.00_rc_shift6 (M00193_2.00_rc)
; positions_6nt_m3 versus M00193_2.00_rc; m=134/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.613492; ------wasawcaaa-- ; cor=; Ncor= a 0 0 0 0 0 0 27.8784 33.5052 16.9181 39.7157 26.6105 16.3761 53.4388 48.6755 51.2805 0 0 c 0 0 0 0 0 0 24.2363 21.7954 32.4073 15.9866 16.6316 38.6994 10.8975 16.2027 10.5625 0 0 g 0 0 0 0 0 0 22.1503 22.0145 30.2164 19.7223 20.1118 23.4724 19.078 15.7238 20.0316 0 0 t 0 0 0 0 0 0 25.735 22.6849 20.4582 24.5754 36.6461 21.4521 16.5856 19.3981 18.1253 0 0

M06224_2.00_shift6 (M06224_2.00)
; positions_6nt_m3 versus M06224_2.00; m=135/246; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.613387; ------RtCrwAAar-- ; cor=; Ncor= a 0 0 0 0 0 0 69.2308 7.69231 0 46.1538 30.7692 92.3077 100 61.5385 38.4615 0 0 c 0 0 0 0 0 0 0 15.3846 69.2308 23.0769 7.69231 0 0 23.0769 23.0769 0 0 g 0 0 0 0 0 0 30.7692 23.0769 7.69231 30.7692 15.3846 0 0 0 38.4615 0 0 t 0 0 0 0 0 0 0 53.8462 23.0769 0 46.1538 7.69231 0 15.3846 0 0 0

M03207_2.00_shift5 (HOXD12)
; positions_6nt_m3 versus M03207_2.00 (HOXD12); m=136/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.61253; -----rgTCGTAAAAm- ; cor=; Ncor= a 0 0 0 0 0 46.0132 21.546 0.0701754 0.218182 13.1345 0.0725689 85.9208 99.781 96.4714 71.3093 39.3275 0 c 0 0 0 0 0 11.3387 17.1924 3.4386 99.4182 0.126904 0.725689 0 0 0 9.6505 35.2339 0 g 0 0 0 0 0 38.4053 60.7286 0.561404 0.363636 86.7386 0 0.125707 0.218978 0.42343 2.50391 5.62865 0 t 0 0 0 0 0 4.24287 0.533096 95.9298 0 0 99.2017 13.9535 0 3.10515 16.5363 19.8099 0

M09161_2.00_rc_shift5 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m3 versus M09161_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=137/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.610441; -----dGCmATaAAw-- ; cor=; Ncor= a 0 0 0 0 0 29.6 7 2.8 49 94.6 0.4 61.8 96.4 88.6 51 0 0 c 0 0 0 0 0 1.6 13.4 80.2 45.4 1.8 1.2 3.2 1.6 4.6 7.4 0 0 g 0 0 0 0 0 40 77.4 1.4 0.4 2.4 2.4 12.6 1.2 2.8 15.6 0 0 t 0 0 0 0 0 28.8 2.2 15.6 5.2 1.2 96 22.4 0.8 4 26 0 0

M07551_2.00_rc_shift5 (CTCF_rc)
; positions_6nt_m3 versus M07551_2.00_rc (CTCF_rc); m=138/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.609733; -----AAAAAyAAAAR- ; cor=; Ncor= a 0 0 0 0 0 100 100 100 73.6842 94.7368 15.7895 100 78.9474 100 84.2105 68.4211 0 c 0 0 0 0 0 0 0 0 10.5263 0 26.3158 0 15.7895 0 10.5263 0 0 g 0 0 0 0 0 0 0 0 10.5263 5.2632 5.2632 0 0 0 0 31.5789 0 t 0 0 0 0 0 0 0 0 5.2632 0 52.6316 0 5.2632 0 5.2632 0 0

M00508_2.00_rc_shift5 (M00508_2.00_rc)
; positions_6nt_m3 versus M00508_2.00_rc; m=139/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.607794; -----rrymrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 25.6067 26.3052 13.8894 32.0918 43.6555 11.8057 51.3416 70.4721 58.598 35.7531 0 0 c 0 0 0 0 0 22.0399 23.5651 31.5358 37.2853 10.5522 11.0075 12.5347 6.32947 13.7454 21.0444 0 0 g 0 0 0 0 0 30.9649 37.704 10.7094 15.3114 38.719 3.59154 7.0887 6.99515 10.1828 17.7545 0 0 t 0 0 0 0 0 21.3885 12.4257 43.8653 15.3114 7.07332 73.5952 29.035 16.2033 17.4738 25.448 0 0

M03133_2.00_shift5 (HOXC11)
; positions_6nt_m3 versus M03133_2.00 (HOXC11); m=140/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.606582; -----rrTCGTWAAah- ; cor=; Ncor= a 0 0 0 0 0 27.7755 26.1372 1.4838 2.16978 18.7851 0.485437 71.6178 98.3213 96.7742 62.3416 28.7398 0 c 0 0 0 0 0 10.5734 12.0382 1.60094 93.6429 0 0 0.240867 0 1.69158 10.9225 25.5285 0 g 0 0 0 0 0 45.1403 61.8246 0.859039 0.456795 81.2149 0 1.00361 0 0.668765 7.07045 15.6098 0 t 0 0 0 0 0 16.5108 0 96.0562 3.73049 0 99.5146 27.1377 1.67866 0.86546 19.6655 30.122 0

M05755_2.00_shift7 (TCF7)
; positions_6nt_m3 versus M05755_2.00 (TCF7); m=141/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.605698; -------asATCAAag- ; cor=; Ncor= a 0 0 0 0 0 0 0 53.927 0 86.4594 0 0 100 87.0557 64.1016 8.004 0 c 0 0 0 0 0 0 0 11.0089 65.5836 0 0 80.5596 0 8.11671 6.5625 21.3607 0 g 0 0 0 0 0 0 0 18.9616 33.1528 1.73867 0 17.9676 0 0.371353 11.5625 60.6803 0 t 0 0 0 0 0 0 0 16.1025 1.26354 11.8019 100 1.47275 0 4.45623 17.7734 9.95498 0

M05340_2.00_shift5 (HOXC10,HOXC6)
; positions_6nt_m3 versus M05340_2.00 (HOXC10,HOXC6); m=142/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.605398; -----grTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 19.4615 25.4455 0 0 15.6747 0 89.7436 100 99.7625 61.517 21.0362 0 c 0 0 0 0 0 22.602 8.07191 0 100 0 0 0 0 0 12.952 35.854 0 g 0 0 0 0 0 44.7619 66.4825 0 0 84.3253 0 0 0 0 6.28073 14.4436 0 t 0 0 0 0 0 13.1746 0 100 0 0 100 10.2564 0 0.23753 19.2502 28.6662 0

M03142_2.00_shift5 (HOXD13)
; positions_6nt_m3 versus M03142_2.00 (HOXD13); m=143/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.604638; -----gCTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 5.7842 2.90873 0.655738 2.32108 17.8995 0.551876 90.1705 99.337 99.778 75.1672 29.4772 0 c 0 0 0 0 0 21.5795 90.1705 0.218579 86.9439 0 0.220751 0.100301 0 0 12.0401 32.4805 0 g 0 0 0 0 0 54.8387 6.92076 0.874317 0.0967118 82.1005 0 0.802407 0 0.221976 3.76254 6.89655 0 t 0 0 0 0 0 17.7976 0 98.2514 10.6383 0 99.2274 8.92678 0.662983 0 9.0301 31.1457 0

M03176_2.00_shift5 (HOXB13)
; positions_6nt_m3 versus M03176_2.00 (HOXB13); m=144/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.604565; -----sCTCGTAAAah- ; cor=; Ncor= a 0 0 0 0 0 11.6191 4.59857 0.35517 2.87691 20.3593 0.083612 84.1808 99.0445 98.7164 66.9663 34.2282 0 c 0 0 0 0 0 36.1158 89.8605 5.32755 86.8172 0.0332668 0.250836 0.317797 0 0.455487 13.3146 31.25 0 g 0 0 0 0 0 36.1577 5.35243 0.23678 0.400583 79.3081 0 0.211864 0 0.0414079 6.06742 7.63423 0 t 0 0 0 0 0 16.1074 0.188466 94.0805 9.90532 0.299401 99.6656 15.2895 0.955546 0.786749 13.6517 26.8876 0

M00538_2.00_rc_shift5 (M00538_2.00_rc)
; positions_6nt_m3 versus M00538_2.00_rc; m=145/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.603465; -----rrymrtwaaw-- ; cor=; Ncor= a 0 0 0 0 0 25.5374 27.194 14.0484 32.7127 42.7202 13.6804 49.0305 67.305 57.0495 34.4765 0 0 c 0 0 0 0 0 21.9803 23.8789 28.0085 38.0067 12.1177 11.2006 12.7107 8.6645 12.7295 21.1212 0 0 g 0 0 0 0 0 29.375 36.708 10.832 15.2986 37.5124 7.35932 8.52023 7.76196 10.8473 17.8192 0 0 t 0 0 0 0 0 23.1072 12.219 47.1111 13.9819 7.64973 67.7597 29.7385 16.2686 19.3737 26.5831 0 0

M00297_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m3 versus M00297_2.00_rc (HOXD13_rc); m=146/246; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.603345; -----gsgtaywAaa-- ; cor=; Ncor= a 0 0 0 0 0 24.9574 21.532 22.9275 20.2625 63.4014 4.89403 54.5821 79.2274 64.0553 36.5909 0 0 c 0 0 0 0 0 23.504 34.451 16.1567 17.7924 17.107 28.1632 8.58233 6.43867 12.6765 22.1935 0 0 g 0 0 0 0 0 30.483 26.5635 37.0526 15.9391 13.3229 2.99821 7.76562 3.39506 7.31368 16.4414 0 0 t 0 0 0 0 0 21.0557 17.4535 23.8632 46.006 6.16869 63.9446 29.07 10.9389 15.9546 24.7742 0 0

M03101_2.00_shift5 (HOXA13)
; positions_6nt_m3 versus M03101_2.00 (HOXA13); m=147/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.601197; -----wCTCGTAAAAm- ; cor=; Ncor= a 0 0 0 0 0 27.6667 5.37313 0 0 13.3705 4.11392 93.1677 100 100 75.188 41.3333 0 c 0 0 0 0 0 14 89.5522 5.95611 83.5655 1.67131 0.949367 0.310559 0 0 2.50627 26 0 g 0 0 0 0 0 18.3333 5.07463 0 0 83.5655 0 0 0 0 7.76942 10.6667 0 t 0 0 0 0 0 40 0 94.0439 16.4345 1.39276 94.9367 6.52174 0 0 14.5363 22 0

M05757_2.00_shift7 (TCF7)
; positions_6nt_m3 versus M05757_2.00 (TCF7); m=148/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.600719; -------asATCAAAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 63.0478 0.742295 85.8103 1.73373 1.30682 97.2601 92.6486 81.1773 7.41288 0 c 0 0 0 0 0 0 0 5.14976 57.9635 0 0.147203 85.2131 0 3.19691 1.38024 20.7177 0 g 0 0 0 0 0 0 0 17.3621 38.8414 0.0143041 0 12.8409 0.162127 1.97683 6.58999 67.8677 0 t 0 0 0 0 0 0 0 14.4404 2.4528 14.1754 98.1191 0.639205 2.57782 2.17761 10.8525 4.00177 0

M03130_2.00_shift5 (HOXC13)
; positions_6nt_m3 versus M03130_2.00 (HOXC13); m=149/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.599777; -----gCTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 13.1265 3.207 0.3108 1.82456 16.5567 0 88.2105 98.8985 99.9205 72.9118 30.9713 0 c 0 0 0 0 0 22.9117 91.6181 1.6317 88.2105 0.263852 0 0.0701754 0.314713 0 10.0348 28.5032 0 g 0 0 0 0 0 39.3795 4.22741 0.3885 0.701754 82.9156 0.396197 0.140351 0.157356 0 5.16241 11.7038 0 t 0 0 0 0 0 24.5823 0.947522 97.669 9.26316 0.263852 99.6038 11.5789 0.629426 0.0794913 11.891 28.8217 0

M05398_2.00_shift5 (HOXA10,HOXC6)
; positions_6nt_m3 versus M05398_2.00 (HOXA10,HOXC6); m=150/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.599581; -----grTCrTWAAmy- ; cor=; Ncor= a 0 0 0 0 0 20.6151 31.1671 3.19285 6.83723 31.8774 0.191755 73.8036 95.2425 81.8396 33.2057 17.5708 0 c 0 0 0 0 0 20.567 13.6074 7.06684 91.8394 0 0 0 0.411711 7.54717 26.2041 36.1498 0 g 0 0 0 0 0 36.4728 55.2255 1.10685 0 67.8618 0 0.177242 0 1.33648 16.6188 20.0192 0 t 0 0 0 0 0 22.345 0 88.6335 1.32333 0.260756 99.8082 26.0191 4.34584 9.27673 23.9713 26.2602 0

M03136_2.00_shift5 (HOXC12)
; positions_6nt_m3 versus M03136_2.00 (HOXC12); m=151/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.599536; -----rGTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 33.7366 20.1085 0.251256 4.26033 8.04278 0 88.2522 99.3756 99.032 75.1618 33.5583 0 c 0 0 0 0 0 6.02606 11.2991 1.55322 91.9931 0.0427807 0.0465116 0.287533 0 0.299608 11.1247 26.5069 0 g 0 0 0 0 0 50.5351 68.5764 0.045683 0.256904 91.9144 0.0232558 0.10269 0.0462535 0 4.70526 8.6572 0 t 0 0 0 0 0 9.70219 0.0159591 98.1498 3.48962 0 99.9302 11.3576 0.578168 0.668357 9.00822 31.2776 0

M06476_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M06476_2.00_rc (HOXC5,HOXC6_rc); m=152/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.598408; -------tmATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 33.3333 85.7143 0 76.1905 100 95.2381 0 0 0 c 0 0 0 0 0 0 0 23.8095 52.381 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 14.2857 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 61.9048 14.2857 0 100 23.8095 0 4.7619 0 0 0

M09395_2.00_rc_shift6 (TCF7L1_rc)
; positions_6nt_m3 versus M09395_2.00_rc (TCF7L1_rc); m=153/246; ncol2=13; w=0; offset=0; strand=R; shift=6; score=0.597191; ------vaswTCAAAGr ; cor=; Ncor= a 0 0 0 0 0 0 34.6 67.6 4.2 61.2 6.8 6.4 98 93.6 94.6 12.6 27 c 0 0 0 0 0 0 27.4 5.4 49.6 1.2 1.8 72 1 1.2 0.2 4.8 21.2 g 0 0 0 0 0 0 30.8 9.8 38.2 0.6 2 17.4 0 5.2 4.6 80.4 40.8 t 0 0 0 0 0 0 7.2 17.2 8 37 89.4 4.2 1 0 0.6 2.2 11

M05890_2.00_shift5 (TCF7)
; positions_6nt_m3 versus M05890_2.00 (TCF7); m=154/246; ncol2=13; w=-1; offset=-1; strand=D; shift=5; score=0.597097; -----aaAsATCAAAgr ; cor=; Ncor= a 0 0 0 0 0 31.6 36.7 69.8 2.4 77.7 5.7 4.3 95 91.4 88.1 11.1 28 c 0 0 0 0 0 23.5 20.4 6.1 43.2 1 0.7 86.7 0.9 3 1.5 19.4 18.3 g 0 0 0 0 0 22.2 19.8 10.4 49.7 1.4 0.8 6 0.4 3.1 3.6 66.3 38.5 t 0 0 0 0 0 22.7 23.1 13.8 4.7 19.9 92.9 3 3.7 2.5 6.8 3.2 15.2

M05075_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m3 versus M05075_2.00_rc (HOXC11_rc); m=155/246; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.596236; -----grTCGTWAAay- ; cor=; Ncor= a 0 0 0 0 0 23.572 29.7529 0.492487 1.21424 22.5785 0 69.7101 96.6397 95.9834 47.7053 23.1214 0 c 0 0 0 0 0 20.7765 14.2625 2.5626 96.3906 0 0 0 0.158426 1.78054 18.5264 31.6194 0 g 0 0 0 0 0 41.5617 55.9846 0.200334 0 77.4215 0 0.138338 0 0.115942 10.4878 18.8336 0 t 0 0 0 0 0 14.0897 0 96.7446 2.39521 0 100 30.1516 3.20187 2.12008 23.2805 26.4257 0

M01662_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M01662_2.00 (ARID3B,ARID3C); m=156/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.59518; -------kwATyaaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.246 32.2758 84.0479 3.76409 23.864 56.6849 48.6881 38.9881 30.1875 0 c 0 0 0 0 0 0 0 24.0047 15.7103 2.11994 10.9737 31.8925 10.9957 16.3697 14.6327 23.7463 0 g 0 0 0 0 0 0 0 25.7453 23.6726 10.6057 7.35592 11.0494 16.2405 17.7331 23.8851 20.8515 0 t 0 0 0 0 0 0 0 26.004 28.3413 3.22647 77.9062 33.1941 16.0789 17.209 22.4942 25.2147 0

M03099_2.00_shift5 (HOXA13)
; positions_6nt_m3 versus M03099_2.00 (HOXA13); m=157/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.59513; -----sCTCGTAAAam- ; cor=; Ncor= a 0 0 0 0 0 12.9989 3.1 0.632244 2.45339 20.054 0 81.3716 96.4835 95.8515 60.5935 31.8907 0 c 0 0 0 0 0 32.6112 87.8 4.10959 86.1629 0.989209 0.453515 0.834106 0 1.31004 15.873 32.6879 0 g 0 0 0 0 0 35.4618 7.9 2.73973 0.392542 78.9568 0 0.278035 0 1.63755 6.34921 13.2118 0 t 0 0 0 0 0 18.9282 1.2 92.5184 10.9912 0 99.5465 17.5162 3.51648 1.20087 17.1843 22.2096 0

M03208_2.00_shift5 (HOXD12)
; positions_6nt_m3 versus M03208_2.00 (HOXD12); m=158/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.594452; -----rrTCGTAAAaw- ; cor=; Ncor= a 0 0 0 0 0 27.9033 26.8018 0.251383 6.79012 17.4816 0 78.6039 98.7033 90.1042 53.6359 29.5849 0 c 0 0 0 0 0 14.1881 11.9691 3.2177 83.9065 0 0 1.40438 0 4.45076 17.1082 23.9096 0 g 0 0 0 0 0 42.5118 61.2291 0.854701 3.57143 82.3453 0.262055 0.0826105 0 0 10.2311 15.2916 0 t 0 0 0 0 0 15.3967 0 95.6762 5.73192 0.173085 99.7379 19.9091 1.29668 5.44508 19.0248 31.2139 0

M05771_2.00_shift7 (LEF1)
; positions_6nt_m3 versus M05771_2.00 (LEF1); m=159/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.594043; -------asATCAAAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 55.8271 0 86.7657 2.03693 0.820092 98.9794 91.0057 77.5732 7.31287 0 c 0 0 0 0 0 0 0 13.4354 53.5564 0.236327 0.11422 87.8182 0 5.75425 2.06761 24.9914 0 g 0 0 0 0 0 0 0 18.0189 44.7228 0.388251 0 11.3617 0.385134 0 8.361 63.6599 0 t 0 0 0 0 0 0 0 12.7186 1.72084 12.6097 97.8488 0 0.635471 3.24008 11.9982 4.03587 0

M01655_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M01655_2.00 (ARID3B,ARID3C); m=160/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.59331; -------ydATyAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 19.6725 40.3679 99.9299 0.0504388 16.5827 73.2498 66.103 51.0165 33.5782 0 c 0 0 0 0 0 0 0 27.0916 8.15014 0.00950887 0.124059 37.6511 5.33279 9.31116 9.89618 22.7343 0 g 0 0 0 0 0 0 0 20.4754 25.9984 0.0187693 0.0417108 3.31468 11.9876 11.3727 17.4991 14.496 0 t 0 0 0 0 0 0 0 32.7605 25.4836 0.0417719 99.7838 42.4515 9.4298 13.2132 21.5882 29.1915 0

M09174_2.00_rc_shift4 (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc)
; positions_6nt_m3 versus M09174_2.00_rc (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc); m=161/246; ncol2=13; w=-2; offset=-2; strand=R; shift=4; score=0.592608; ----argymATAAATCA ; cor=; Ncor= a 0 0 0 0 43.2264 36.8264 23.746 13.4032 27.8742 81.8995 0.182582 69.7455 89.2697 91.306 11.8079 4.05357 70.8839 c 0 0 0 0 13.3453 9.913 18.037 53.8171 52.6736 3.4 2.35488 18.2359 3.64301 4.09728 0.751872 80.0297 6.30114 g 0 0 0 0 20.3654 38.2683 50.6883 6.26086 1.6037 12.7797 1.73206 6.2704 0.427119 0.352888 4.2011 3.89728 0.591934 t 0 0 0 0 23.0629 14.9923 7.52873 26.5189 17.8485 1.92076 95.7305 5.74821 6.6602 4.24384 83.2391 12.0194 22.2231

M05773_2.00_shift7 (LEF1)
; positions_6nt_m3 versus M05773_2.00 (LEF1); m=162/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.591976; -------AsATCAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 73.5607 0.275522 83.9367 0.619624 0.893906 99.4746 98.8042 91.3189 6.10774 0 c 0 0 0 0 0 0 0 2.8166 56.7648 0 0 88.9534 0 0.434846 0 17.5556 0 g 0 0 0 0 0 0 0 14.8438 42.0824 0 0 10.1396 0 0.268155 1.6545 74.2492 0 t 0 0 0 0 0 0 0 8.77893 0.87732 16.0633 99.3804 0.0130497 0.525356 0.492825 7.02659 2.08754 0

M05118_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m3 versus M05118_2.00 (HOXC6,HOXD10); m=163/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.59098; -----rGTCGTAAAAh- ; cor=; Ncor= a 0 0 0 0 0 31.4635 19.401 0.845187 0 4.95089 0 95.4893 99.7896 98.8535 77.2942 28.5112 0 c 0 0 0 0 0 19.2324 1.69717 1.40177 100 0 0.399076 0 0.210438 0.667084 6.97637 30.8098 0 g 0 0 0 0 0 37.5791 78.9018 0 0 95.0491 0 0 0 0.291849 3.43928 9.57402 0 t 0 0 0 0 0 11.725 0 97.753 0 0 99.6009 4.51067 0 0.187617 12.2901 31.105 0

M05336_2.00_shift5 (HOXC10,HOXC6)
; positions_6nt_m3 versus M05336_2.00 (HOXC10,HOXC6); m=164/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.590597; -----srTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 18.6671 28.4534 0.46373 0.87073 20.449 0 78.4895 98.493 96.0797 43.5962 17.2672 0 c 0 0 0 0 0 27.3716 13.1346 2.11991 98.493 0 0 0 0.0334896 1.63345 22.2799 38.4092 0 g 0 0 0 0 0 37.8443 58.353 0 0 79.551 0 0 0 0.130676 12.0219 18.4908 0 t 0 0 0 0 0 16.117 0.0590319 97.4164 0.636303 0 100 21.5105 1.47354 2.15616 22.102 25.8328 0

M05777_2.00_shift7 (LEF1)
; positions_6nt_m3 versus M05777_2.00 (LEF1); m=165/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.589083; -------AsATCAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.7396 0.817057 81.6304 1.38416 2.069 99.5875 99.3258 91.2306 7.84809 0 c 0 0 0 0 0 0 0 2.47122 48.475 0 0 85.4335 0 0.102845 0 16.4949 0 g 0 0 0 0 0 0 0 17.459 48.8164 0 0 12.301 0 0.411382 1.47468 73.0856 0 t 0 0 0 0 0 0 0 10.3302 1.89154 18.3696 98.6158 0.19658 0.412466 0.159982 7.29467 2.57137 0

M04897_2.00_shift5 (HOXA11)
; positions_6nt_m3 versus M04897_2.00 (HOXA11); m=166/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.588486; -----gGTCGTAAAay- ; cor=; Ncor= a 0 0 0 0 0 21.802 20.0801 0.494933 0.942285 11.3598 0 81.0072 98.5046 96.6015 65.2311 22.988 0 c 0 0 0 0 0 14.2375 7.41318 1.39053 97.7621 0 0.86001 0 0 1.81564 11.1914 31.6145 0 g 0 0 0 0 0 52.3729 72.3063 0.306387 0 88.4484 0 0.741753 0.166152 0.418994 7.26187 12.1446 0 t 0 0 0 0 0 11.5876 0.200356 97.8082 1.29564 0.191816 99.14 18.251 1.32922 1.16387 16.3156 33.253 0

M09682_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M09682_2.00_rc (HOXC5,HOXC6_rc); m=167/246; ncol2=9; w=0; offset=1; strand=R; shift=7; score=0.586857; -------TmATTAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.657895 61.8421 93.8596 0.657895 21.4912 87.5 70.3947 64.4737 67.7632 0 c 0 0 0 0 0 0 0 14.2544 36.8421 4.82456 0.657895 8.99123 0 8.99123 14.2544 15.1316 0 g 0 0 0 0 0 0 0 0.657895 0.657895 0.657895 0.657895 0.657895 0 0.657895 20.614 9.86842 0 t 0 0 0 0 0 0 0 84.4298 0.657895 0.657895 98.0263 68.8596 12.5 19.9561 0.657895 7.23684 0

M00474_2.00_rc_shift5 (M00474_2.00_rc)
; positions_6nt_m3 versus M00474_2.00_rc; m=168/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.585584; -----gvymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.5353 25.5458 18.9608 28.7651 42.1678 18.2144 46.128 57.3117 51.9248 0 0 0 c 0 0 0 0 0 22.4235 25.8026 27.1771 38.8288 11.9611 17.1537 11.375 13.3099 14.7287 0 0 0 g 0 0 0 0 0 28.5059 33.4641 15.6798 14.4279 33.1704 12.5813 13.0844 13.4436 13.0632 0 0 0 t 0 0 0 0 0 24.5353 15.1875 38.1823 17.9782 12.7007 52.0505 29.4125 15.9348 20.2833 0 0 0

M05079_2.00_shift5 (HOXC11)
; positions_6nt_m3 versus M05079_2.00 (HOXC11); m=169/246; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.585345; -----grTCGTWAAay- ; cor=; Ncor= a 0 0 0 0 0 19.7004 26.9879 1.06333 1.99288 17.5113 0 71.6407 95.447 94.7692 48.8352 21.8531 0 c 0 0 0 0 0 22.9713 13.3319 4.0879 94.9941 0 0 0.357846 0 2.48521 18.9169 33.8162 0 g 0 0 0 0 0 41.598 59.529 0.236295 0.0237248 82.4887 0 0.483092 0.405244 0 10.7086 17.8072 0 t 0 0 0 0 0 15.7303 0.151253 94.6125 2.98932 0 100 27.5183 4.14779 2.74556 21.5392 26.5235 0

M05249_2.00_rc_shift6 (CDX2_rc)
; positions_6nt_m3 versus M05249_2.00_rc (CDX2_rc); m=170/246; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.583876; ------gymATwamc-- ; cor=; Ncor= a 0 0 0 0 0 0 21.1707 0 34.025 69.1972 0 57.5898 65.798 48.0789 20.4697 0 0 c 0 0 0 0 0 0 20.6099 65.2296 52.3077 8.36769 0 11.7279 10.1476 25.1095 35.6116 0 0 g 0 0 0 0 0 0 47.599 0 4.42457 18.6272 0 4.21881 0.299815 10.364 23.0634 0 0 t 0 0 0 0 0 0 10.6204 34.7704 9.2427 3.80791 100 26.4635 23.7546 16.4476 20.8552 0 0

M00421_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m3 versus M00421_2.00_rc (HOXC6_rc); m=171/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.583697; ------gTmATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 20.6926 1.18768 37.3687 83.3105 9.80988 33.3301 97.9503 91.1058 0 0 0 c 0 0 0 0 0 0 17.2467 21.1783 57.5626 1.96982 0.00980008 0.00980008 0.0100969 2.54302 0 0 0 g 0 0 0 0 0 0 55.1516 3.53951 0.0100969 14.7099 0.00980008 0.00980008 0.0100969 0.0126518 0 0 0 t 0 0 0 0 0 0 6.90903 74.0945 5.05856 0.00980008 90.1705 66.6503 2.02948 6.33856 0 0 0

M00296_2.00_shift7 (HOXD13)
; positions_6nt_m3 versus M00296_2.00 (HOXD13); m=172/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.582578; -------GkATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0048 8.66656 90.9539 0.00694252 81.2344 96.5079 98.4626 48.8783 0 0 c 0 0 0 0 0 0 0 3.0088 10.2409 0.00694252 0.00694252 0.00694252 0.00694252 0.00757346 14.4491 0 0 g 0 0 0 0 0 0 0 75.9796 25.1968 2.78395 0.00694252 0.00694252 0.00694252 0.00757346 7.78543 0 0 t 0 0 0 0 0 0 0 8.0068 55.8958 6.25521 99.9792 18.7517 3.4782 1.52227 28.8872 0 0

M05779_2.00_shift7 (TCF7L1)
; positions_6nt_m3 versus M05779_2.00 (TCF7L1); m=173/246; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.582501; -------asATCAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 63.6256 2.23614 88.4679 0 3.01058 96.1504 93.6356 85.0356 5.13937 0 c 0 0 0 0 0 0 0 6.99052 45.5277 0 0.461681 87.3881 0 0 3.7213 18.1185 0 g 0 0 0 0 0 0 0 16.2322 50.5367 0 0.369344 9.6013 1.96956 0.523104 3.32542 75.4355 0 t 0 0 0 0 0 0 0 13.1517 1.69946 11.5321 99.169 0 1.88004 5.84133 7.91766 1.30662 0

M06223_2.00_rc_shift7 (M06223_2.00_rc)
; positions_6nt_m3 versus M06223_2.00_rc; m=174/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.579554; -------yAATwAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.63158 71.0526 100 0 63.1579 89.4737 76.3158 42.1053 0 0 c 0 0 0 0 0 0 0 39.4737 18.4211 0 0 5.26316 0 7.89474 10.5263 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 7.89474 15.7895 0 0 t 0 0 0 0 0 0 0 57.8947 10.5263 0 100 31.5789 10.5263 7.89474 31.5789 0 0

M06225_2.00_rc_shift7 (M06225_2.00_rc)
; positions_6nt_m3 versus M06225_2.00_rc; m=175/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.574034; -------ymATwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.04225 56.4085 89.2254 0 50.7746 85.8451 73.3099 36.4789 0 0 c 0 0 0 0 0 0 0 39.3662 27.9577 2.32394 0 3.59155 0.422535 8.16901 21.831 0 0 g 0 0 0 0 0 0 0 1.5493 1.19718 8.4507 0 0.704225 1.05634 9.50704 17.3239 0 0 t 0 0 0 0 0 0 0 57.0423 14.4366 0 100 44.9296 12.6761 9.01408 24.3662 0 0

M00382_2.00_rc_shift5 (HOXC6_rc)
; positions_6nt_m3 versus M00382_2.00_rc (HOXC6_rc); m=176/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.574026; -----grymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 23.6621 25.2747 18.4371 34.6373 53.1765 14.6872 44.8155 58.4872 48.0589 0 0 0 c 0 0 0 0 0 23.4266 23.8028 32.2774 34.9855 9.91071 11.3246 11.0514 11.5745 17.3298 0 0 0 g 0 0 0 0 0 29.4847 34.8065 13.2549 14.6572 25.6262 8.81961 9.23087 13.1814 15.8382 0 0 0 t 0 0 0 0 0 23.4266 16.1159 36.0306 15.72 11.2866 65.1686 34.9023 16.7569 18.7731 0 0 0

M09193_2.00_rc_shift3 (M09193_2.00_rc)
; positions_6nt_m3 versus M09193_2.00_rc; m=177/246; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.567491; ---arrGymATAAAa-- ; cor=; Ncor= a 0 0 0 56 47.6 40.6 14.6 4 42.2 92.4 1.6 92.8 97.8 96.2 59 0 0 c 0 0 0 12.2 16 4 6.2 56.2 46 1.2 1.6 2 0.2 1.2 13 0 0 g 0 0 0 22.6 25 43 75.4 1.2 0.6 6.2 1.8 1.8 1.2 0.8 16.2 0 0 t 0 0 0 9.2 11.4 12.4 3.8 38.6 11.2 0.2 95 3.4 0.8 1.8 11.8 0 0

M10779_2.00_rc_shift3 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M10779_2.00_rc (HOXC5,HOXC6_rc); m=178/246; ncol2=14; w=-3; offset=-3; strand=R; shift=3; score=0.565029; ---sbsGcCATaAAbsy ; cor=; Ncor= a 0 0 0 22.2222 12.9032 19.4444 2.5 9.52381 20.9302 68.8889 15.5556 53.3333 74.359 77.7778 20.5882 10.3448 12.5 c 0 0 0 25.9259 25.8065 30.5556 15 57.1429 69.7674 2.22222 0 17.7778 10.2564 19.4444 26.4706 37.931 33.3333 g 0 0 0 33.3333 25.8065 27.7778 80 9.52381 4.65116 15.5556 4.44444 4.44444 5.12821 2.77778 26.4706 41.3793 20.8333 t 0 0 0 18.5185 35.4839 22.2222 2.5 23.8095 4.65116 13.3333 80 24.4444 10.2564 0 26.4706 10.3448 33.3333

M09173_2.00_rc_shift3 (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc)
; positions_6nt_m3 versus M09173_2.00_rc (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc); m=179/246; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.558652; ---rrrGymATAAAa-- ; cor=; Ncor= a 0 0 0 43.8 38.4 42.4 17 0.8 46.4 96.2 0.2 85.6 98.2 93.4 52.8 0 0 c 0 0 0 15 18.4 4.4 8.6 59.6 45.6 0 0 6.4 0.8 1.4 17.2 0 0 g 0 0 0 26.8 32 31 71.4 0.6 0.4 3.4 0.2 5.8 0.2 4.4 21.6 0 0 t 0 0 0 14.4 11.2 22.2 3 39 7.6 0.4 99.6 2.2 0.8 0.8 8.4 0 0

M00436_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00436_2.00_rc (HOXC5,HOXC6_rc); m=180/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.55629; ------gymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 24.3036 18.7831 30.688 57.7296 17.1082 32.5762 52.4827 37.6344 0 0 0 c 0 0 0 0 0 0 21.772 39.3682 34.6006 12.3761 12.8015 12.5986 15.6502 21.9314 0 0 0 g 0 0 0 0 0 0 35.1851 12.9742 17.1822 20.817 10.3767 9.0574 12.9421 18.5028 0 0 0 t 0 0 0 0 0 0 18.7393 28.8745 17.5293 9.07724 59.7136 45.7679 18.925 21.9314 0 0 0

M06275_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M06275_2.00_rc (HOXC5,HOXC6_rc); m=181/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.555289; -------YmATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.25564 43.985 91.3534 0 25.188 96.9925 79.3233 44.7368 0 0 c 0 0 0 0 0 0 0 26.3158 48.8722 0 1.12782 0 0.75188 3.00752 18.4211 0 0 g 0 0 0 0 0 0 0 0 1.50376 8.64662 0 0 0 6.76692 16.9173 0 0 t 0 0 0 0 0 0 0 71.4286 5.6391 0 98.8722 74.812 2.25564 10.9023 19.9248 0 0

M06251_2.00_rc_shift6 (DBX1,DBX2,HLX_rc)
; positions_6nt_m3 versus M06251_2.00_rc (DBX1,DBX2,HLX_rc); m=182/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.55338; ------byAATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 14.0952 5.33333 72 85.5238 1.71429 63.2381 80.5714 49.9048 0 0 0 c 0 0 0 0 0 0 27.8095 33.3333 18.8571 10.0952 0 3.80952 5.90476 13.5238 0 0 0 g 0 0 0 0 0 0 26.6667 1.90476 7.42857 0 3.04762 0.380952 2.47619 5.33333 0 0 0 t 0 0 0 0 0 0 31.4286 59.4286 1.71429 4.38095 95.2381 32.5714 11.0476 31.2381 0 0 0

M06202_2.00_shift3 (FOXP4)
; positions_6nt_m3 versus M06202_2.00 (FOXP4); m=183/246; ncol2=14; w=-3; offset=-3; strand=D; shift=3; score=0.552104; ---aarrbyAAAAAAAt ; cor=; Ncor= a 0 0 0 59.0909 54.5455 36.3636 45.4545 9.09091 4.54545 90.9091 100 100 100 100 100 100 18.1818 c 0 0 0 18.1818 13.6364 13.6364 22.7273 36.3636 40.9091 0 0 0 0 0 0 0 4.54545 g 0 0 0 22.7273 18.1818 36.3636 27.2727 27.2727 18.1818 9.09091 0 0 0 0 0 0 18.1818 t 0 0 0 0 13.6364 13.6364 4.54545 27.2727 36.3636 0 0 0 0 0 0 0 59.0909

M02075_2.00_rc_shift6 (M02075_2.00_rc)
; positions_6nt_m3 versus M02075_2.00_rc; m=184/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.550188; ------GTmRTwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 25 0.0332889 58.0219 74.1302 3.25387 41.9137 99.9001 92.2043 0 0 0 c 0 0 0 0 0 0 5.03992 16.6778 41.9137 0.0322165 0.0322165 0.0322165 0.0332889 3.87865 0 0 0 g 0 0 0 0 0 0 69.9102 0.0332889 0.0322165 25.8054 0.0322165 0.0322165 0.0332889 0.0384025 0 0 0 t 0 0 0 0 0 0 0.0499002 83.2557 0.0322165 0.0322165 96.6817 58.0219 0.0332889 3.87865 0 0 0

M00207_2.00_shift8 (M00207_2.00)
; positions_6nt_m3 versus M00207_2.00; m=185/246; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.543792; --------satcaaag- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 19.4088 42.1098 24.8778 18.2174 65.195 61.9209 49.3892 24.537 0 c 0 0 0 0 0 0 0 0 29.2455 16.7815 13.929 43.9204 3.18159 10.1336 10.802 21.7624 0 g 0 0 0 0 0 0 0 0 32.3213 17.9983 15.8628 21.3784 10.5633 13.2747 16.9409 35.5231 0 t 0 0 0 0 0 0 0 0 19.0245 23.1103 45.3303 16.4838 21.0601 14.6708 22.8679 18.1775 0

M00427_2.00_rc_shift5 (M00427_2.00_rc)
; positions_6nt_m3 versus M00427_2.00_rc; m=186/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.541107; -----grymATwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.48 25.0152 10.3358 44.5757 74.2688 10.0026 47.7017 58.549 52.1553 0 0 0 c 0 0 0 0 0 21.4958 21.7472 39.473 32.6939 6.40892 4.31822 15.2559 9.20608 14.6469 0 0 0 g 0 0 0 0 0 30.504 39.2316 7.43067 7.59271 17.7732 2.34631 3.76206 11.1324 16.35 0 0 0 t 0 0 0 0 0 23.5202 14.006 42.7605 15.1377 1.54913 83.3329 33.2803 21.1125 16.8479 0 0 0

M06210_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M06210_2.00_rc (HOXC5,HOXC6_rc); m=187/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.541061; ------kmmATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 13.5135 27.027 59.4595 97.2973 0 29.7297 89.1892 48.6486 0 0 0 c 0 0 0 0 0 0 5.40541 40.5405 40.5405 0 0 5.40541 2.7027 5.40541 0 0 0 g 0 0 0 0 0 0 35.1351 8.10811 0 0 0 0 0 10.8108 0 0 0 t 0 0 0 0 0 0 45.9459 24.3243 0 2.7027 100 64.8649 8.10811 35.1351 0 0 0

M09676_2.00_rc_shift7 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1_rc)
; positions_6nt_m3 versus M09676_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1_rc); m=188/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.537684; -------TCATwAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 4.54545 18.1818 100 0 44.697 96.0227 59.4697 0 0 0 c 0 0 0 0 0 0 0 18.1818 79.5455 0 2.27273 0 0.568182 3.40909 0 0 0 g 0 0 0 0 0 0 0 0 2.27273 0 2.27273 2.27273 2.84091 14.7727 0 0 0 t 0 0 0 0 0 0 0 77.2727 0 0 95.4545 53.0303 0.568182 22.3485 0 0 0

M00447_2.00_rc_shift5 (M00447_2.00_rc)
; positions_6nt_m3 versus M00447_2.00_rc; m=189/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.535815; -----grymATwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.4899 25.7031 9.83479 42.1201 69.7472 6.45151 52.7099 56.9509 52.035 0 0 0 c 0 0 0 0 0 22.1594 20.8345 41.0966 31.2033 6.52002 4.03221 11.7612 9.79811 15.6726 0 0 0 g 0 0 0 0 0 30.5164 39.9094 7.97193 7.17444 21.8648 0.00950739 3.2375 10.0965 13.9004 0 0 0 t 0 0 0 0 0 22.8343 13.553 41.0966 19.5021 1.86802 89.5068 32.2915 23.1545 18.392 0 0 0

M06550_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m3 versus M06550_2.00_rc (DBX1,DBX2,HLX_rc); m=190/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.534171; -------TmATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 50 100 0 50 87.5 87.5 0 0 0 c 0 0 0 0 0 0 0 18.75 37.5 0 0 12.5 0 0 0 0 0 g 0 0 0 0 0 0 0 0 12.5 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 81.25 0 0 100 37.5 12.5 12.5 0 0 0

M00391_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00391_2.00_rc (HOXC5,HOXC6_rc); m=191/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.529126; -----kgymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 22.9617 23.2602 17.2564 34.862 57.617 17.4107 33.3467 54.8166 40.9599 0 0 0 c 0 0 0 0 0 22.507 23.0288 34.7501 33.1617 11.9869 13.1587 12.8965 13.9293 19.9373 0 0 0 g 0 0 0 0 0 28.8996 36.4793 14.2703 16.4676 20.7764 12.7698 11.7866 15.5489 18.965 0 0 0 t 0 0 0 0 0 25.6317 17.2316 33.7231 15.5086 9.61974 56.6608 41.9702 15.7052 20.1377 0 0 0

M00481_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00481_2.00_rc (HOXC5,HOXC6_rc); m=192/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.528887; ------gymaTwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 24.58 17.8676 33.4745 59.0307 16.0144 29.6859 52.4723 36.3628 0 0 0 c 0 0 0 0 0 0 23.3812 37.0767 35.1907 12.0379 9.33236 13.206 14.5893 22.5007 0 0 0 g 0 0 0 0 0 0 34.19 11.5074 15.041 19.6496 6.38204 7.1755 14.0172 20.9795 0 0 0 t 0 0 0 0 0 0 17.8488 33.5484 16.2938 9.28182 68.2712 49.9325 18.9212 20.1569 0 0 0

M01680_2.00_shift6 (M01680_2.00)
; positions_6nt_m3 versus M01680_2.00; m=193/246; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.528471; ------AAAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 99.0132 99.2574 99.2574 99.2574 25 99.2574 99.2574 99.0132 0 0 0 c 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 0 0 0 g 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 0 0 0 t 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 74.505 0.247525 0.247525 0.328947 0 0 0

M01557_2.00_shift6 (M01557_2.00)
; positions_6nt_m3 versus M01557_2.00; m=194/246; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.52553; ------TTAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0.961538 0.961538 97.1154 97.1154 0.961538 97.1154 97.1154 97.1154 0 0 0 c 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0 0 0 g 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0 0 0 t 0 0 0 0 0 0 97.1154 97.1154 0.961538 0.961538 97.1154 0.961538 0.961538 0.961538 0 0 0

M04857_2.00_shift1 (FOXR2)
; positions_6nt_m3 versus M04857_2.00 (FOXR2); m=195/246; ncol2=17; w=-5; offset=-5; strand=D; shift=1; score=0.525352; -ayrTAwACATAAAtrw ; cor=; Ncor= a 0 61.0519 10.0686 65.5193 1.72414 99.8007 56.0563 89.6181 0.060024 98.6211 0.462963 99.4702 72.0384 99.2074 22.4082 53.8615 39.4404 c 0 6.65779 36.1556 8.21256 17.2414 0.13289 1.69014 0.0596659 90.1561 0.722259 0.0661376 0.0662252 6.09113 0.264201 7.55102 9.98668 18.8541 g 0 23.3688 4.00458 25.1812 0.107759 0.0664452 13.7465 10.0239 0 0.328299 0.132275 0.0662252 4.22062 0.264201 8.73469 35.486 3.73085 t 0 8.92144 49.7712 1.08696 80.9267 0 28.507 0.298329 9.78391 0.328299 99.3386 0.397351 17.6499 0.264201 61.3061 0.665779 37.9747

M02196_2.00_rc_shift6 (M02196_2.00_rc)
; positions_6nt_m3 versus M02196_2.00_rc; m=196/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.523346; ------GYMATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 17.6557 0.0227066 69.964 86.2265 0.0195925 35.2861 97.8997 81.5195 0 0 0 c 0 0 0 0 0 0 5.90482 27.2707 25.9992 3.93809 0.0195925 0.0195925 0.0203915 5.28391 0 0 0 g 0 0 0 0 0 0 73.4724 2.29337 0.019984 9.81583 1.97884 0.0195925 0.0203915 2.6551 0 0 0 t 0 0 0 0 0 0 2.9671 70.4133 4.01679 0.0195925 97.982 64.6748 2.05954 10.5415 0 0 0

M02110_2.00_rc_shift6 (M02110_2.00_rc)
; positions_6nt_m3 versus M02110_2.00_rc; m=197/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.521048; ------cwCRTCAA--- ; cor=; Ncor= a 0 0 0 0 0 0 4.80038 39.98 2.88242 68.3754 0.0262881 0.0262881 97.2192 86.1226 0 0 0 c 0 0 0 0 0 0 52.3289 23.3356 85.645 0.0262881 0.0262881 92.0347 0.0269978 6.92149 0 0 0 g 0 0 0 0 0 0 19.0589 3.36218 0.0285388 31.572 0.0262881 7.91272 0.0269978 0.0344353 0 0 0 t 0 0 0 0 0 0 23.8118 33.3222 11.4441 0.0262881 99.9211 0.0262881 2.72678 6.92149 0 0 0

M00294_2.00_shift7 (HOXD13)
; positions_6nt_m3 versus M00294_2.00 (HOXD13); m=198/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.520143; -------TyGTWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.84336 17.0394 4.5805 0.651445 72.8909 97.4007 91.3478 60.5917 0 0 c 0 0 0 0 0 0 0 22.0194 49.6223 0.00653424 0.00644995 0.00644995 0.00644995 4.3225 14.1458 0 0 g 0 0 0 0 0 0 0 0.926266 2.96949 77.1106 0.00644995 1.29644 0.00644995 0.00719217 4.04887 0 0 t 0 0 0 0 0 0 0 75.2109 30.3688 18.3024 99.3357 25.8062 2.58643 4.3225 21.2137 0 0

M10558_2.00_shift4 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1)
; positions_6nt_m3 versus M10558_2.00 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1); m=199/246; ncol2=16; w=-2; offset=-2; strand=D; shift=4; score=0.519186; ----wwdayATAAAyAw ; cor=; Ncor= a 0 0 0 0 30.4348 43.4783 26.087 56.5217 17.3913 91.3043 0 95.6522 100 100 0 91.3043 39.1304 c 0 0 0 0 4.34783 17.3913 13.0435 17.3913 43.4783 0 8.69565 4.34783 0 0 60.8696 4.34783 17.3913 g 0 0 0 0 17.3913 8.69565 26.087 17.3913 8.69565 8.69565 0 0 0 0 0 4.34783 8.69565 t 0 0 0 0 47.8261 30.4348 34.7826 8.69565 30.4348 0 91.3043 0 0 0 39.1304 0 34.7826

M01667_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m3 versus M01667_2.00 (ARID3B,ARID3C); m=200/246; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.517406; -------yrATyaaa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.5252 30.832 94.1882 5.17629 19.1668 56.2171 50.2612 41.6728 0 0 c 0 0 0 0 0 0 0 27.1045 19.6593 0.0248548 3.50464 30.9749 10.0666 15.9145 14.8775 0 0 g 0 0 0 0 0 0 0 21.5355 25.4968 0.0593262 0.0248248 8.87446 16.2683 17.5883 23.567 0 0 t 0 0 0 0 0 0 0 26.8348 24.012 5.72759 91.2942 40.9838 17.4479 16.236 19.8827 0 0

M06203_2.00_shift3 (FOXP4)
; positions_6nt_m3 versus M06203_2.00 (FOXP4); m=201/246; ncol2=15; w=-3; offset=-3; strand=D; shift=3; score=0.517302; ---mmmmarAAAAAAws ; cor=; Ncor= a 0 0 0 33.7066 33.6656 32.2296 31.5673 42.1634 49.3377 96.0265 99.5585 100 99.117 100 98.6755 44.9227 12.792 c 0 0 0 27.8835 32.2259 26.4901 27.8146 21.0817 5.96026 0 0 0 0 0 0.993377 7.28477 37.3749 g 0 0 0 24.86 19.0476 20.9713 20.3091 15.011 31.7881 0.993377 0 0 0.883002 0 0.331126 3.31126 34.2603 t 0 0 0 13.5498 15.0609 20.3091 20.3091 21.7439 12.9139 2.98013 0.441501 0 0 0 0 44.4812 15.5729

M06273_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M06273_2.00_rc (HOXC5,HOXC6_rc); m=202/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.516349; -------YMATTAAr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 70 100 0 15 100 100 45 0 0 c 0 0 0 0 0 0 0 30 30 0 0 0 0 0 15 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 t 0 0 0 0 0 0 0 70 0 0 100 85 0 0 15 0 0

M06499_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M06499_2.00_rc (HOXC5,HOXC6_rc); m=203/246; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.516349; -------YMATTAAr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 70 100 0 15 100 100 45 0 0 c 0 0 0 0 0 0 0 30 30 0 0 0 0 0 15 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 t 0 0 0 0 0 0 0 70 0 0 100 85 0 0 15 0 0

M05899_2.00_shift8 (ARID3B,ARID3C)
; positions_6nt_m3 versus M05899_2.00 (ARID3B,ARID3C); m=204/246; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.516111; --------AATyAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80.9524 100 0 4.7619 95.2381 85.7143 90.4762 45 0 c 0 0 0 0 0 0 0 0 0 0 0 61.9048 0 9.52381 9.52381 40 0 g 0 0 0 0 0 0 0 0 4.7619 0 0 0 4.7619 4.7619 0 5 0 t 0 0 0 0 0 0 0 0 14.2857 0 100 33.3333 0 0 0 10 0

M04970_2.00_rc_shift6 (HOXA5,HOXC5,HOXC6,NKX1-1,NKX1-2,OTP_rc)
; positions_6nt_m3 versus M04970_2.00_rc (HOXA5,HOXC5,HOXC6,NKX1-1,NKX1-2,OTP_rc); m=205/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.516057; ------rtCRTTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 39.3514 11.9942 1.29263 69.874 3.41623 18.8177 91.9524 47.396 0 0 0 c 0 0 0 0 0 0 12.7171 10.2303 89.2464 1.53317 7.48838 6.54332 0.651743 15.1618 0 0 0 g 0 0 0 0 0 0 43.5138 10.4379 5.50055 28.5928 0.409948 1.42148 6.68745 19.7227 0 0 0 t 0 0 0 0 0 0 4.41777 67.3376 3.9604 0 88.6854 73.2175 0.708416 17.7196 0 0 0

M04923_2.00_rc_shift6 (DLX3,NANOGP8,NKX1-1,NKX1-2_rc)
; positions_6nt_m3 versus M04923_2.00_rc (DLX3,NANOGP8,NKX1-1,NKX1-2_rc); m=206/246; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.515516; ------vtcrTwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 39.0538 21.8274 14.8098 64.5028 9.20428 27.0164 100 36.6452 0 0 0 c 0 0 0 0 0 0 30.1935 5.94634 62.6922 0 15.38 5.63821 0 13.6774 0 0 0 g 0 0 0 0 0 0 30.4086 16.0503 10.143 35.4972 6.4133 6.68233 0 17.1183 0 0 0 t 0 0 0 0 0 0 0.344086 56.176 12.355 0 69.0024 60.663 0 32.5591 0 0 0

M02183_2.00_shift6 (M02183_2.00)
; positions_6nt_m3 versus M02183_2.00; m=207/246; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.514492; ------GYAATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 9.14855 0.0766871 92.1012 99.7699 0.0766871 53.7577 99.7508 88.6062 0 0 0 c 0 0 0 0 0 0 0.0905797 30.7515 7.7454 0.0766871 0.0766871 0.0766871 0.0830565 11.1726 0 0 0 g 0 0 0 0 0 0 90.6703 0.0766871 0.0766871 0.0766871 0.0766871 0.0766871 0.0830565 0.110619 0 0 0 t 0 0 0 0 0 0 0.0905797 69.0951 0.0766871 0.0766871 99.7699 46.089 0.0830565 0.110619 0 0 0

M00258_2.00_shift8 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m3 versus M00258_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=208/246; ncol2=11; w=0; offset=2; strand=D; shift=8; score=0.513193; --------catamAAyA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 22.5433 39.6289 12.8087 67.6798 60.8196 78.6392 70.8551 9.70097 83.2678 c 0 0 0 0 0 0 0 0 32.37 19.479 21.478 9.85135 28.471 9.34316 9.35625 49.9877 2.48136 g 0 0 0 0 0 0 0 0 22.5433 21.771 24.1525 11.993 0.0246932 0.0246932 0.0246932 9.34316 2.48136 t 0 0 0 0 0 0 0 0 22.5433 19.1212 41.5607 10.4758 10.6847 11.993 19.7639 30.9682 11.7695

M04858_2.00_shift1 (FOXR2)
; positions_6nt_m3 versus M04858_2.00 (FOXR2); m=209/246; ncol2=17; w=-5; offset=-5; strand=D; shift=1; score=0.512107; -ryrTAaACATAAATrw ; cor=; Ncor= a 0 58.4032 3.204 53.3213 0.625711 100 58.751 95.4047 0 98.6814 0.0310655 99.536 80.9967 100 14.9056 49.767 32.5979 c 0 7.36253 47.5015 2.83816 7.84983 0 1.25932 0 95.6031 0.398651 0 0.061862 4.22854 0 10.8483 4.16278 23.3375 g 0 26.0019 2.20459 43.8406 0 0 16.037 4.59532 0 0.919963 0 0.402103 2.8442 0 4.42612 45.4489 1.61591 t 0 8.23237 47.0899 0 91.5245 0 23.9527 0 4.39691 0 99.9689 0 11.9305 0 69.8199 0.621311 42.4487

M11390_2.00_shift8 (TBP,TBPL2)
; positions_6nt_m3 versus M11390_2.00 (TBP,TBPL2); m=210/246; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.51161; --------tATAAATw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.38298 72.3404 0 100 100 85.1064 6.38298 44.6809 0 c 0 0 0 0 0 0 0 0 8.51064 0 0 0 0 2.12766 6.38298 8.51064 0 g 0 0 0 0 0 0 0 0 19.1489 12.766 0 0 0 8.51064 12.766 8.51064 0 t 0 0 0 0 0 0 0 0 65.9574 14.8936 100 0 0 4.25532 74.4681 38.2979 0

M03046_2.00_shift9 (FOXI2,FOXI3,FOXJ3)
; positions_6nt_m3 versus M03046_2.00 (FOXI2,FOXI3,FOXJ3); m=211/246; ncol2=8; w=0; offset=3; strand=D; shift=9; score=0.509487; ---------rTAAAcAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 45.3438 12.9527 91.046 92.2151 90.047 23.4165 99.3945 70.5774 c 0 0 0 0 0 0 0 0 0 0 4.91099 3.56577 0.963082 0 55.1344 0 9.09091 g 0 0 0 0 0 0 0 0 0 54.6562 11.6022 3.09033 2.16693 4.62382 14.3954 0.605536 7.55528 t 0 0 0 0 0 0 0 0 0 0 70.5341 2.29794 4.6549 5.32915 7.05374 0 12.7764

M08960_2.00_rc_shift3 (ZNF350_rc)
; positions_6nt_m3 versus M08960_2.00_rc (ZNF350_rc); m=212/246; ncol2=18; w=-3; offset=-3; strand=R; shift=3; score=0.509398; ---twgGwmatAAAArr ; cor=; Ncor= a 0 0 0 19.8 37.2 23.4 16.4 25.4 25.8 65.6 17.2 77.6 94.8 96.4 76.6 36.4 30.4 c 0 0 0 24.2 11 5.6 10.6 8.6 43.4 7.6 11.8 6.2 1.8 1.6 1.8 5.4 5.6 g 0 0 0 13.2 19.6 67 68.2 18.2 6.4 3.6 19 11.2 2.8 1.8 14 53.4 57.4 t 0 0 0 42.8 32.2 4 4.8 47.8 24.4 23.2 52 5 0.6 0.2 7.6 4.8 6.6

M00477_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00477_2.00_rc (HOXC5,HOXC6_rc); m=213/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.503992; -----ggymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.9294 24.1345 18.7621 36.4827 62.9137 19.8235 31.0419 61.7893 38.7129 0 0 0 c 0 0 0 0 0 21.0321 21.6205 31.2444 30.7792 5.32155 6.53301 7.42861 5.66174 17.5697 0 0 0 g 0 0 0 0 0 29.8459 36.0045 17.1473 19.0457 21.3652 18.6691 17.0362 19.5648 24.6844 0 0 0 t 0 0 0 0 0 24.1926 18.2405 32.8463 13.6924 10.3996 54.9744 44.4933 12.9842 19.033 0 0 0

M00366_2.00_rc_shift6 (POU3F4_rc)
; positions_6nt_m3 versus M00366_2.00_rc (POU3F4_rc); m=214/246; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.501366; ------ykmaTww---- ; cor=; Ncor= a 0 0 0 0 0 0 21.3714 21.1802 34.5888 66.772 13.6384 41.6191 40.8076 0 0 0 0 c 0 0 0 0 0 0 25.8434 11.978 40.5903 4.39859 6.37822 9.37981 17.0964 0 0 0 0 g 0 0 0 0 0 0 14.6151 39.3725 12.3484 12.1981 5.32754 11.3425 16.5911 0 0 0 0 t 0 0 0 0 0 0 38.1702 27.4693 12.4725 16.6313 74.6559 37.6585 25.5048 0 0 0 0

M00360_2.00_shift6 (POU4F3)
; positions_6nt_m3 versus M00360_2.00 (POU4F3); m=215/246; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.499869; ------tgmataw---- ; cor=; Ncor= a 0 0 0 0 0 0 22.2454 20.8561 32.9493 58.1249 16.4889 50.4778 33.8573 0 0 0 0 c 0 0 0 0 0 0 17.8523 13.7034 40.6489 16.4874 15.3742 8.94894 21.3735 0 0 0 0 g 0 0 0 0 0 0 15.9927 42.8474 12.8709 15.6833 12.8416 17.6641 17.325 0 0 0 0 t 0 0 0 0 0 0 43.9096 22.5931 13.5308 9.70454 55.2953 22.9091 27.4442 0 0 0 0

M09679_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M09679_2.00_rc (HOXC5,HOXC6_rc); m=216/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.49903; -----kgymATTAa--- ; cor=; Ncor= a 0 0 0 0 0 17.6699 23.3555 4.56439 36.8176 95.3939 0.568182 15.8014 89.2403 65.2468 0 0 0 c 0 0 0 0 0 14.3301 19.9713 41.178 59.5298 3.09091 0.568182 2.36742 1.32576 2.89502 0 0 0 g 0 0 0 0 0 40.6872 42.6001 3.56439 0.662879 0.568182 0.568182 0.852273 0.94697 22.8636 0 0 0 t 0 0 0 0 0 27.3128 14.0731 50.6932 2.98972 0.94697 98.2955 80.9789 8.48701 8.99459 0 0 0

M06489_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m3 versus M06489_2.00_rc (DBX1,DBX2,HLX_rc); m=217/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.498338; -------ThATwAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3.125 46.875 100 3.125 43.75 90.625 59.375 0 0 0 c 0 0 0 0 0 0 0 21.875 28.125 0 0 3.125 0 12.5 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 3.125 3.125 9.375 0 0 0 t 0 0 0 0 0 0 0 75 25 0 96.875 50 6.25 18.75 0 0 0

M00365_2.00_shift6 (POU3F4)
; positions_6nt_m3 versus M00365_2.00 (POU3F4); m=218/246; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.496742; ------tgmatww---- ; cor=; Ncor= a 0 0 0 0 0 0 22.4589 22.08 32.1329 59.7235 20.9486 46.3542 34.4888 0 0 0 0 c 0 0 0 0 0 0 22.9126 13.6627 38.0873 5.41799 8.18311 8.63921 20.0983 0 0 0 0 g 0 0 0 0 0 0 16.4724 41.0452 15.4851 15.1761 10.4028 14.2437 18.553 0 0 0 0 t 0 0 0 0 0 0 38.1561 23.2121 14.2946 19.6824 60.4655 30.763 26.8599 0 0 0 0

M10761_2.00_shift8 (NKX2-6)
; positions_6nt_m3 versus M10761_2.00 (NKX2-6); m=219/246; ncol2=7; w=0; offset=2; strand=D; shift=8; score=0.496197; --------yatAAAk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5.26316 52.6316 5.26316 68.4211 94.7368 73.6842 10.5263 0 0 c 0 0 0 0 0 0 0 0 47.3684 10.5263 21.0526 10.5263 0 5.26316 10.5263 0 0 g 0 0 0 0 0 0 0 0 15.7895 15.7895 15.7895 0 0 0 31.5789 0 0 t 0 0 0 0 0 0 0 0 31.5789 21.0526 57.8947 21.0526 5.26316 21.0526 47.3684 0 0

M09386_2.00_rc_shift3 (TCF7_rc)
; positions_6nt_m3 versus M09386_2.00_rc (TCF7_rc); m=220/246; ncol2=16; w=-3; offset=-3; strand=R; shift=3; score=0.492501; ---rammASWTCAAAGg ; cor=; Ncor= a 0 0 0 45.8 45.2 28.2 29.4 76 3 68 11.4 6.6 96 86.4 90 19 24 c 0 0 0 12.8 24.2 45.2 48 5.4 68.2 6.6 2 70 1.2 6.8 0.2 4 21.4 g 0 0 0 27.4 19 12.8 15.8 8.8 27.4 0.2 2.8 21.2 0.6 6 7.2 75.8 48.6 t 0 0 0 14 11.6 13.8 6.8 9.8 1.4 25.2 83.8 2.2 2.2 0.8 2.6 1.2 6

M00517_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00517_2.00_rc (HOXC5,HOXC6_rc); m=221/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.492061; -----rgymaTwaa--- ; cor=; Ncor= a 0 0 0 0 0 27.9417 24.9147 18.6613 33.4492 67.9241 10.3408 32.8099 56.5088 37.5655 0 0 0 c 0 0 0 0 0 19.3003 20.1955 41.1183 36.9671 8.40134 6.20958 9.40019 12.7355 21.0329 0 0 0 g 0 0 0 0 0 28.2225 36.4325 10.6595 13.4641 19.4606 1.50094 5.81668 11.7564 17.923 0 0 0 t 0 0 0 0 0 24.5355 18.4573 29.5609 16.1195 4.21391 81.9487 51.9733 18.9992 23.4785 0 0 0

M00381_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00381_2.00_rc (HOXC5,HOXC6_rc); m=222/246; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.48743; ------symatwa---- ; cor=; Ncor= a 0 0 0 0 0 0 18.8377 20.1582 28.7464 54.7835 24.6841 27.3022 52.4462 0 0 0 0 c 0 0 0 0 0 0 26.4659 35.6451 33.7342 10.1086 15.8974 17.4087 17.6333 0 0 0 0 g 0 0 0 0 0 0 30.749 17.5247 20.2573 21.187 11.6599 12.8967 14.4369 0 0 0 0 t 0 0 0 0 0 0 23.9474 26.6719 17.2621 13.9209 47.7586 42.3924 15.4837 0 0 0 0

M11491_2.00_shift7 (M11491_2.00)
; positions_6nt_m3 versus M11491_2.00; m=223/246; ncol2=15; w=0; offset=1; strand=D; shift=7; score=0.486301; -------sTATAWAwrs ; cor=; Ncor= a 0 0 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 c 0 0 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 g 0 0 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 t 0 0 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393

M11388_2.00_shift7 (TBP,TBPL2)
; positions_6nt_m3 versus M11388_2.00 (TBP,TBPL2); m=224/246; ncol2=15; w=0; offset=1; strand=D; shift=7; score=0.486301; -------sTATAWAwrs ; cor=; Ncor= a 0 0 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 c 0 0 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 g 0 0 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 t 0 0 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393

M09152_2.00_rc_shift3 (CDX2_rc)
; positions_6nt_m3 versus M09152_2.00_rc (CDX2_rc); m=225/246; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.483726; ---amwGCmATaAAa-- ; cor=; Ncor= a 0 0 0 58.2781 31.1258 43.7086 9.27152 0 64.2384 92.7152 0 49.6689 82.7815 80.7947 51.6556 0 0 c 0 0 0 17.2185 35.0993 8.60927 13.245 80.7947 31.1258 1.3245 0.662252 17.2185 6.62252 5.96026 21.1921 0 0 g 0 0 0 23.1788 19.8675 21.1921 76.1589 0.662252 0 5.29801 0.662252 24.5033 0 7.28477 11.9205 0 0 t 0 0 0 1.3245 13.9073 26.4901 1.3245 18.543 4.63576 0.662252 98.6755 8.60927 10.596 5.96026 15.2318 0 0

M09680_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M09680_2.00_rc (HOXC5,HOXC6_rc); m=226/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.479926; -------ymATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 11.0101 52.4874 97.1591 0.568182 18.3523 87.6515 72.3295 0 0 0 c 0 0 0 0 0 0 0 40.7576 38.1187 0.94697 0.94697 2.72096 3.73737 5.15783 0 0 0 g 0 0 0 0 0 0 0 5.25253 3.95202 1.32576 0.568182 0.852273 1.51515 12.3043 0 0 0 t 0 0 0 0 0 0 0 42.9798 5.44192 0.568182 97.9167 78.0745 7.09596 10.2083 0 0 0

M00216_2.00_rc_shift9 (TBPL2_rc)
; positions_6nt_m3 versus M00216_2.00_rc (TBPL2_rc); m=227/246; ncol2=7; w=0; offset=3; strand=R; shift=9; score=0.478997; ---------wTwwaww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 48.65 1.44887 63.9678 37.1463 51.5031 40.0342 32.36 0 c 0 0 0 0 0 0 0 0 0 10.4296 19.121 6.94748 9.53399 12.3251 11.2429 17.0632 0 g 0 0 0 0 0 0 0 0 0 11.9969 7.85215 0.0533106 0.0769087 12.3251 11.0202 18.8577 0 t 0 0 0 0 0 0 0 0 0 28.9234 71.578 29.0314 53.2428 23.8466 37.7028 31.7192 0

M07630_2.00_rc_shift7 (ZNF561_rc)
; positions_6nt_m3 versus M07630_2.00_rc (ZNF561_rc); m=228/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.477993; -------RCAGAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 28.9474 0 100 0 100 100 100 0 0 0 c 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 71.0526 0 0 100 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

M08325_2.00_rc_shift9 (ZNF22_rc)
; positions_6nt_m3 versus M08325_2.00_rc (ZNF22_rc); m=229/246; ncol2=9; w=0; offset=3; strand=R; shift=9; score=0.477463; ---------AAAAAAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 c 0 0 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 g 0 0 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 t 0 0 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089

M08306_2.00_rc_shift9 (ZNF384_rc)
; positions_6nt_m3 versus M08306_2.00_rc (ZNF384_rc); m=230/246; ncol2=9; w=0; offset=3; strand=R; shift=9; score=0.477463; ---------AAAAAAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 c 0 0 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 g 0 0 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 t 0 0 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994

M00476_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00476_2.00_rc (HOXC5,HOXC6_rc); m=231/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.475873; -----rgymaTwaa--- ; cor=; Ncor= a 0 0 0 0 0 25.3334 23.3437 17.964 32.8483 63.9303 11.9012 29.3243 52.3188 35.524 0 0 0 c 0 0 0 0 0 22.4687 23.8153 38.0298 36.303 10.4625 7.74182 13.1763 13.2946 22.2026 0 0 0 g 0 0 0 0 0 29.7291 34.4782 11.9218 14.0399 19.449 1.57876 6.1621 12.9017 20.2917 0 0 0 t 0 0 0 0 0 22.4687 18.3628 32.0844 16.8088 6.15826 78.7783 51.3373 21.485 21.9817 0 0 0

M00558_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m3 versus M00558_2.00_rc (HOXC5,HOXC6_rc); m=232/246; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.472316; -----rgymaTwaa--- ; cor=; Ncor= a 0 0 0 0 0 26.4238 22.0303 15.512 38.5195 66.2171 7.96823 28.2979 60.0023 40.083 0 0 0 c 0 0 0 0 0 19.7719 23.6276 35.574 37.0091 8.35566 8.04831 8.78275 10.2204 20.3067 0 0 0 g 0 0 0 0 0 31.9529 38.184 9.59858 11.259 17.8667 2.08645 3.01256 11.5234 17.8312 0 0 0 t 0 0 0 0 0 21.8514 16.158 39.3154 13.2125 7.56051 81.897 59.9068 18.254 21.7791 0 0 0

M00364_2.00_rc_shift6 (POU3F4_rc)
; positions_6nt_m3 versus M00364_2.00_rc (POU3F4_rc); m=233/246; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.466669; ------ykmAtwa---- ; cor=; Ncor= a 0 0 0 0 0 0 22.7771 20.2943 38.6696 68.5506 14.8432 36.204 37.593 0 0 0 0 c 0 0 0 0 0 0 25.6811 17.8203 29.2258 5.62697 12.1526 11.4635 15.1321 0 0 0 0 g 0 0 0 0 0 0 17.5623 29.0884 16.6941 17.5942 10.3557 10.2694 22.5745 0 0 0 0 t 0 0 0 0 0 0 33.9795 32.7971 15.4106 8.22823 62.6485 42.0631 24.7004 0 0 0 0

M06204_2.00_shift6 (M06204_2.00)
; positions_6nt_m3 versus M06204_2.00; m=234/246; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.466396; ------cwGATAA---- ; cor=; Ncor= a 0 0 0 0 0 0 11.7647 58.8235 0 100 5.88235 100 100 0 0 0 0 c 0 0 0 0 0 0 52.9412 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 17.6471 0 100 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 17.6471 41.1765 0 0 94.1176 0 0 0 0 0 0

M00499_2.00_rc_shift6 (DBX1,DBX2,HLX_rc)
; positions_6nt_m3 versus M00499_2.00_rc (DBX1,DBX2,HLX_rc); m=235/246; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.458328; ------byaatwa---- ; cor=; Ncor= a 0 0 0 0 0 0 18.0902 17.5178 38.8597 66.7958 21.3722 30.0299 48.6211 0 0 0 0 c 0 0 0 0 0 0 25.4159 36.3509 20.4904 13.0873 14.7625 16.8137 14.9402 0 0 0 0 g 0 0 0 0 0 0 29.2352 13.2397 24.5315 5.93959 8.60284 18.9574 15.8641 0 0 0 0 t 0 0 0 0 0 0 27.2587 32.8916 16.1183 14.1773 55.2624 34.1989 20.5746 0 0 0 0

M06250_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m3 versus M06250_2.00_rc (DBX1,DBX2,HLX_rc); m=236/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.457708; -------ThWwwwA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.25 43.75 75 34.375 40.625 65.625 75 0 0 0 c 0 0 0 0 0 0 0 21.875 28.125 0 0 3.125 0 9.375 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3.125 3.125 0 0 0 t 0 0 0 0 0 0 0 71.875 28.125 25 65.625 56.25 31.25 12.5 0 0 0

M05895_2.00_shift9 (LEF1)
; positions_6nt_m3 versus M05895_2.00 (LEF1); m=237/246; ncol2=10; w=0; offset=3; strand=D; shift=9; score=0.454368; ---------WTCAAAGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 74.3 3.2 4.6 98.4 98.5 96.3 8.8 23.2 c 0 0 0 0 0 0 0 0 0 0.3 0.5 84.9 0.2 0.5 0.6 12.9 18.9 g 0 0 0 0 0 0 0 0 0 0.3 0.2 8.7 0.2 0.4 1.8 77.3 44.6 t 0 0 0 0 0 0 0 0 0 25 96.2 1.8 1.2 0.6 1.3 0.9 13.4

M02651_2.00_shift9 (ARID3B,ARID3C)
; positions_6nt_m3 versus M02651_2.00 (ARID3B,ARID3C); m=238/246; ncol2=6; w=0; offset=3; strand=D; shift=9; score=0.451339; ---------ATyAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 100 0 3.7037 100 100 74.0741 0 0 c 0 0 0 0 0 0 0 0 0 0 0 33.3333 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.7037 0 0 t 0 0 0 0 0 0 0 0 0 0 100 62.963 0 0 22.2222 0 0

M02062_2.00_rc_shift4 (HOXC6_rc)
; positions_6nt_m3 versus M02062_2.00_rc (HOXC6_rc); m=239/246; ncol2=10; w=-2; offset=-2; strand=R; shift=4; score=0.448858; ----arsymaTwaa--- ; cor=; Ncor= a 0 0 0 0 34.894 27.1678 19.9656 19.6534 37.9105 67.6567 8.70565 25.9487 62.4437 41.4612 0 0 0 c 0 0 0 0 17.8556 20.533 37.4876 36.9015 41.8976 8.70978 6.7125 11.2023 11.1816 19.1971 0 0 0 g 0 0 0 0 23.6252 27.7167 28.6173 7.99049 6.92562 15.0962 6.01329 3.3405 11.873 16.3587 0 0 0 t 0 0 0 0 23.6252 24.5825 13.9295 35.4546 13.2663 8.53731 78.5686 59.5085 14.5017 22.9831 0 0 0

M06538_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m3 versus M06538_2.00_rc (OTP,SEBOX_rc); m=240/246; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.448541; -------yAATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80 100 0 56.6667 73.3333 43.3333 0 0 0 c 0 0 0 0 0 0 0 50 20 0 0 0 0 10 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3.33333 6.66667 0 0 0 t 0 0 0 0 0 0 0 50 0 0 100 43.3333 23.3333 40 0 0 0

M10845_2.00_rc_shift3 (POU3F2_rc)
; positions_6nt_m3 versus M10845_2.00_rc (POU3F2_rc); m=241/246; ncol2=10; w=-3; offset=-3; strand=R; shift=3; score=0.439467; ---ATTArCATAA---- ; cor=; Ncor= a 0 0 0 100 0 0 100 57.1429 0 100 0 100 85.7143 0 0 0 0 c 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 42.8571 0 0 0 0 0 0 0 0 0 t 0 0 0 0 100 100 0 0 0 0 100 0 14.2857 0 0 0 0

M08396_2.00_rc_shift0 (ZNF350_rc)
; positions_6nt_m3 versus M08396_2.00_rc (ZNF350_rc); m=242/246; ncol2=21; w=-6; offset=-6; strand=R; shift=0; score=0.433273; rgkykgrkyawAAAArr ; cor=; Ncor= a 26.4469 17.4437 19.0514 3.93891 20.6592 20.6592 25.1608 9.72669 20.6592 66.6399 30.9486 78.8585 93.6495 99.7588 89.1479 36.7363 44.7749 c 15.5145 9.0836 15.1929 29.6624 12.299 15.836 13.2637 4.26045 42.2026 13.9068 11.3344 10.6913 4.26045 0.0803859 1.36656 1.36656 2.65273 g 35.4502 56.3505 35.7717 22.2669 25.8039 57.3151 59.5659 28.0547 8.11897 4.90354 8.76206 1.04502 2.00965 0.0803859 8.44051 57.6367 43.4887 t 22.5884 17.1222 29.9839 44.1318 41.2379 6.18971 2.00965 57.9582 29.0193 14.5498 48.955 9.40514 0.0803859 0.0803859 1.04502 4.26045 9.0836

M07738_2.00_rc_shift9 (ZNF649_rc)
; positions_6nt_m3 versus M07738_2.00_rc (ZNF649_rc); m=243/246; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.416653; ---------ATATAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 99.8454 0.0515464 99.8454 0.0515464 99.8454 99.8454 0 0 c 0 0 0 0 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 g 0 0 0 0 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 t 0 0 0 0 0 0 0 0 0 0.0515464 99.8454 0.0515464 99.8454 0.0515464 0.0515464 0 0

M10832_2.00_rc_shift2 (POU2F1_rc)
; positions_6nt_m3 versus M10832_2.00_rc (POU2F1_rc); m=244/246; ncol2=12; w=-4; offset=-4; strand=R; shift=2; score=0.41471; --AATTAvCATAsa--- ; cor=; Ncor= a 0 0 100 100 0 0 76 28.2828 5 100 0 88.1188 22 58.9474 0 0 0 c 0 0 0 0 0 0 0 32.3232 95 0 0 0 28 11.5789 0 0 0 g 0 0 0 0 0 0 0 39.3939 0 0 0 5.94059 28 6.31579 0 0 0 t 0 0 0 0 100 100 24 0 0 0 100 5.94059 22 23.1579 0 0 0

M07646_2.00_rc_shift10 (ZNF613_rc)
; positions_6nt_m3 versus M07646_2.00_rc (ZNF613_rc); m=245/246; ncol2=9; w=0; offset=4; strand=R; shift=10; score=0.411276; ----------WAAAAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 74.5082 99.7541 96.1475 90.5738 97.7869 78.1148 94.5082 c 0 0 0 0 0 0 0 0 0 0 0.0819672 0.0819672 0.0819672 0.0819672 0.0819672 21.7213 0.0819672 g 0 0 0 0 0 0 0 0 0 0 0.0819672 0.0819672 0.0819672 5.65574 2.04918 0.0819672 1.06557 t 0 0 0 0 0 0 0 0 0 0 25.3279 0.0819672 3.68852 3.68852 0.0819672 0.0819672 4.34426

M08236_2.00_rc_shift11 (MZF1_rc)
; positions_6nt_m3 versus M08236_2.00_rc (MZF1_rc); m=246/246; ncol2=7; w=0; offset=5; strand=R; shift=11; score=0.400374; -----------AAAATG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 100 100 100 100 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0