One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_cisBP_Homo_sapiens

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift6 ; 258 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift6 (positions_6nt_m4)
; positions_6nt_m4; m=0 (reference); ncol1=11; shift=6; ncol=17; ------aaAATAAAAww ; Alignment reference a 0 0 0 0 0 0 8675 10232 21805 22653 1335 22033 23187 23306 22062 8968 8367 c 0 0 0 0 0 0 4672 4882 1449 732 1883 896 752 749 1034 5133 5690 g 0 0 0 0 0 0 6067 4843 748 775 1522 1444 896 614 1025 4585 5167 t 0 0 0 0 0 0 6317 5774 1729 1571 20991 1358 896 1062 1610 7045 6507

M03129_2.00_rc_shift6 (HOXC13_rc)
; positions_6nt_m4 versus M03129_2.00_rc (HOXC13_rc); m=1/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.824863; ------cyAATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 8.75 4.50539 69.3231 96.5046 0.312012 88.8112 98.1453 97.6923 79.8742 36.063 0 c 0 0 0 0 0 0 66.1458 62.1939 16.1572 0 0.312012 0 0.309119 1.23077 6.41509 27.874 0 g 0 0 0 0 0 0 19.6875 2.15475 0.10917 0.607903 0.312012 0.699301 0 0 5.15723 12.7559 0 t 0 0 0 0 0 0 5.41667 31.1459 14.4105 2.88754 99.064 10.4895 1.5456 1.07692 8.55346 23.3071 0

M03247_2.00_rc_shift6 (M03247_2.00_rc)
; positions_6nt_m4 versus M03247_2.00_rc; m=2/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.822104; ------syaATAAAah- ; cor=; Ncor= a 0 0 0 0 0 0 7.83909 4.30162 67.7388 95.208 0 85.9241 98.0447 96.517 64.4037 34.6464 0 c 0 0 0 0 0 0 54.3063 53.2895 16.8221 0 0.0473709 0.489596 0 2.38313 17.7982 30.3749 0 g 0 0 0 0 0 0 31.64 0 0 0.271248 0.189484 2.24398 0 0.091659 5.04587 8.68533 0 t 0 0 0 0 0 0 6.21454 42.4089 15.439 4.5208 99.7631 11.3423 1.95531 1.00825 12.7523 26.2933 0

M03253_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m4 versus M03253_2.00_rc (HOXC6_rc); m=3/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.818596; ------gyaATAAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 16.2188 1.85654 65.8694 93.9361 3.04963 73.7947 98.8604 94.0379 76.2135 47.3912 0 c 0 0 0 0 0 0 11.3017 46.9198 22.5892 2.86952 0 0.311968 0 1.27371 7.35779 20.5823 0 g 0 0 0 0 0 0 66.133 0.534459 6.83371 2.5176 0.748544 1.27623 0 1.54472 6.45728 10.4353 0 t 0 0 0 0 0 0 6.34648 50.6892 4.70767 0.676773 96.2018 24.6171 1.1396 3.14363 9.97145 21.5912 0

M03141_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m4 versus M03141_2.00_rc (HOXD13_rc); m=4/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.811776; ------symATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 4.59982 1.70455 60.9389 92.4731 0 86.2155 98.9928 99.8549 80.6565 35.3198 0 c 0 0 0 0 0 0 63.2935 57.2443 30.7352 0 0.145138 0 0.431655 0.145138 8.7925 30.0872 0 g 0 0 0 0 0 0 27.0469 0.568182 0 3.62903 0 0 0 0 3.98593 10.6105 0 t 0 0 0 0 0 0 5.0598 40.483 8.32595 3.89785 99.8549 13.7845 0.57554 0 6.56506 23.9826 0

M03100_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m4 versus M03100_2.00_rc (HOXA13_rc); m=5/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.80524; ------cyaATAAAam- ; cor=; Ncor= a 0 0 0 0 0 0 16.1458 0.262467 66.9377 88.8489 0 89.4928 93.9163 98.8 64.1558 42.1053 0 c 0 0 0 0 0 0 64.3229 64.8294 18.9702 0 0 3.26087 0 1.2 15.5844 29.1498 0 g 0 0 0 0 0 0 18.4896 2.09974 2.43902 0 0 1.81159 0 0 11.4286 9.31174 0 t 0 0 0 0 0 0 1.04167 32.8084 11.6531 11.1511 100 5.43478 6.08365 0 8.83117 19.4332 0

M09202_2.00_rc_shift6 (M09202_2.00_rc)
; positions_6nt_m4 versus M09202_2.00_rc; m=6/257; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.804515; ------cCaATWAwAyc ; cor=; Ncor= a 0 0 0 0 0 0 3.10345 17.2414 59.3103 82.7586 0 73.7931 93.7931 58.6207 80.6897 22.069 11.2069 c 0 0 0 0 0 0 67.931 76.5517 23.4483 0 0 0 0 12.4138 19.3103 37.2414 50.5172 g 0 0 0 0 0 0 18.9655 6.2069 6.2069 17.2414 0 0 0 0 0 6.2069 19.4828 t 0 0 0 0 0 0 10 0 11.0345 0 100 26.2069 6.2069 28.9655 0 34.4828 18.7931

M09134_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m4 versus M09134_2.00_rc (HOXA13_rc); m=7/257; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.804515; ------cCaATWAwAyc ; cor=; Ncor= a 0 0 0 0 0 0 3.10345 17.2414 59.3103 82.7586 0 73.7931 93.7931 58.6207 80.6897 22.069 11.2069 c 0 0 0 0 0 0 67.931 76.5517 23.4483 0 0 0 0 12.4138 19.3103 37.2414 50.5172 g 0 0 0 0 0 0 18.9655 6.2069 6.2069 17.2414 0 0 0 0 0 6.2069 19.4828 t 0 0 0 0 0 0 10 0 11.0345 0 100 26.2069 6.2069 28.9655 0 34.4828 18.7931

M05104_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m4 versus M05104_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=8/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.799078; ------GymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 14.7175 0.429345 61.6247 98.915 1.00241 80.3284 99.4128 98.9425 76.0228 31.7739 0 c 0 0 0 0 0 0 4.67931 64.9431 33.9785 1.08504 0 0.165688 0 0.732839 8.95937 30.5738 0 g 0 0 0 0 0 0 75.5062 0.0186672 1.86619 0 0 0 0.0745643 0 5.4526 15.3853 0 t 0 0 0 0 0 0 5.09698 34.6089 2.53062 0 98.9976 19.5059 0.512629 0.324675 9.56522 22.267 0

M03098_2.00_rc_shift6 (HOXA13_rc)
; positions_6nt_m4 versus M03098_2.00_rc (HOXA13_rc); m=9/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.789298; ------cCmATAAAam- ; cor=; Ncor= a 0 0 0 0 0 0 12.1485 6.32737 55.2463 95.0276 0 82.1656 92.1429 92.1429 58.8369 31.528 0 c 0 0 0 0 0 0 58.0427 70.9766 27.7302 0 3.5514 2.86624 0.892857 5 19.9544 36.7505 0 g 0 0 0 0 0 0 19.685 1.51307 1.39186 0.368324 0 0.636943 1.60714 0 7.63968 8.31721 0 t 0 0 0 0 0 0 10.1237 21.1829 15.6317 4.60405 96.4486 14.3312 5.35714 2.85714 13.569 23.4043 0

M05334_2.00_rc_shift6 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m4 versus M05334_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=10/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.78844; ------GymATWAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 9.82014 0 61.6409 95.1728 1.78371 73.9996 99.2772 99.747 69.4269 23.6483 0 c 0 0 0 0 0 0 7.97769 54.1721 33.6645 1.53379 0 0.223985 0 0 11.592 33.6769 0 g 0 0 0 0 0 0 76.6059 0 0.0655539 3.20772 0 0 0 0 7.4459 14.2495 0 t 0 0 0 0 0 0 5.59629 45.8279 4.62912 0.0856431 98.2163 25.7764 0.722813 0.252958 11.5352 28.4254 0

M03175_2.00_rc_shift6 (HOXB13_rc)
; positions_6nt_m4 versus M03175_2.00_rc (HOXB13_rc); m=11/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.787715; ------CCaATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 7.41236 3.22043 64.4645 94.4312 0 88.7648 99.3924 96.6632 72.3465 35.5268 0 c 0 0 0 0 0 0 74.418 77.2071 23.1803 0.747029 0.251076 0.702202 0 2.6764 14.308 36.4617 0 g 0 0 0 0 0 0 13.8614 0.388673 0.278164 1.29032 0 0.829876 0 0.0347584 4.37045 6.90399 0 t 0 0 0 0 0 0 4.30827 19.1838 12.077 3.53141 99.7489 9.70316 0.607577 0.625652 8.97503 21.1075 0

M09572_2.00_rc_shift6 (M09572_2.00_rc)
; positions_6nt_m4 versus M09572_2.00_rc; m=12/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.786813; ------GymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 20.9 0.1 48.9 99.7 0.1 99.7 99.7 99.7 67.8 24.3 0 c 0 0 0 0 0 0 5.8 44.4 49.3 0.1 0.1 0.1 0.1 0.1 11.5 28.5 0 g 0 0 0 0 0 0 73.3 0.1 0.1 0.1 0.1 0.1 0.1 0.1 7.3 15.4 0 t 0 0 0 0 0 0 0.1 55.4 1.7 0.1 99.7 0.1 0.1 0.1 13.5 31.8 0

M05332_2.00_rc_shift6 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m4 versus M05332_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=13/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.782967; ------GyMATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 1.98058 0 68.1787 99.9668 0.298211 80.33 99.4513 100 84.5367 26.1416 0 c 0 0 0 0 0 0 0.440838 58.2414 29.1385 0 0 0 0.548652 0 6.19767 35.7461 0 g 0 0 0 0 0 0 96.1219 0 0.729596 0.0332226 0 0 0 0 3.27021 13.7122 0 t 0 0 0 0 0 0 1.45668 41.7586 1.95314 0 99.7018 19.67 0 0 5.99539 24.4001 0

M05114_2.00_rc_shift6 (HOXC6,HOXD10_rc)
; positions_6nt_m4 versus M05114_2.00_rc (HOXC6,HOXD10_rc); m=14/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.780835; ------GymATAAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 2.08132 0 66.1914 100 1.91147 85.0044 100 99.8464 80.8458 20.5747 0 c 0 0 0 0 0 0 0 36.6855 32.9939 0 0 0 0 0.15361 9.16252 40.1744 0 g 0 0 0 0 0 0 94.3853 0 0.814664 0 0 0 0 0 3.93864 12.7245 0 t 0 0 0 0 0 0 3.5334 63.3145 0 0 98.0885 14.9956 0 0 6.05307 26.5264 0

M05109_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m4 versus M05109_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=15/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.780377; ------GymATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 0 6.77436 0 61.4965 96.0721 1.2969 75.0046 99.2539 100 74.4619 25.356 0 c 0 0 0 0 0 0 4.54403 59.5733 32.4827 1.32691 0 0.0366703 0 0 10.0205 35.4703 0 g 0 0 0 0 0 0 85.2684 0.25602 2.53683 2.5775 0 0 0 0 5.53356 13.2555 0 t 0 0 0 0 0 0 3.41324 40.1707 3.48391 0.0234852 98.7031 24.9587 0.746088 0 9.98407 25.9182 0

M03229_2.00_rc_shift6 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M03229_2.00_rc (HOXC10,HOXC6_rc); m=16/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.777014; ------gymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 16.183 1.12086 53.0742 85.2054 6.59204 62.6422 94.7275 84.9163 58.7729 38.4554 0 c 0 0 0 0 0 0 20.1945 47.8731 37.0883 6.44429 0 1.16339 0.353179 7.21393 13.398 21.2517 0 g 0 0 0 0 0 0 57.0582 0.297097 8.32509 7.1931 0 1.75801 0.782038 2.48756 13.2415 14.6205 0 t 0 0 0 0 0 0 6.56435 50.709 1.51237 1.15725 93.408 34.4364 4.13724 5.38218 14.5876 25.6724 0

M03283_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M03283_2.00_rc (HOXC5,HOXC6_rc); m=17/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.776674; ------gymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 23.2919 4.75248 63.1922 83.6207 5.88235 50.2538 91.0798 93.2692 63.8158 42.5641 0 c 0 0 0 0 0 0 13.6646 54.4554 25.0814 0.862069 3.16742 1.52284 0.938967 3.36538 8.55263 14.359 0 g 0 0 0 0 0 0 60.2484 2.37624 11.7264 13.3621 3.16742 0 0 0 13.1579 9.74359 0 t 0 0 0 0 0 0 2.79503 38.4158 0 2.15517 87.7828 48.2234 7.98122 3.36538 14.4737 33.3333 0

M03228_2.00_rc_shift6 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M03228_2.00_rc (HOXC10,HOXC6_rc); m=18/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.776668; ------scmATwAAam- ; cor=; Ncor= a 0 0 0 0 0 0 22.9881 22.912 29.4875 96.4082 3.01548 63.1884 96.724 90.8811 65.6658 41.8959 0 c 0 0 0 0 0 0 38.4003 47.7654 56.3051 0.571429 0.733496 2.23602 0 5.07888 15.3183 26.4917 0 g 0 0 0 0 0 0 28.6457 6.22851 2.12157 2.61224 0 0 0.12285 1.69296 6.58882 7.65975 0 t 0 0 0 0 0 0 9.96586 23.094 12.0858 0.408163 96.251 34.5756 3.15315 2.34706 12.427 23.9526 0

M05290_2.00_rc_shift6 (HOXB9,HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M05290_2.00_rc (HOXB9,HOXC5,HOXC6_rc); m=19/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.773432; ------GymATWAAay- ; cor=; Ncor= a 0 0 0 0 0 0 15.6062 1.47826 56.8627 88.7755 0 68.1325 97.416 97.1649 65.3757 20.1413 0 c 0 0 0 0 0 0 3.95177 58.3478 35.2438 1.64835 0 0 0 2.23368 13.6994 31.5371 0 g 0 0 0 0 0 0 75.7535 0.173913 3.46908 7.29984 0 1.92771 0 0.601375 7.74566 14.0459 0 t 0 0 0 0 0 0 4.68855 40 4.42433 2.2763 100 29.9398 2.58398 0 13.1792 34.2756 0

M05117_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m4 versus M05117_2.00 (HOXC6,HOXD10); m=20/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.766612; -----grymATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 22.9161 33.1789 2.23572 67.5634 98.1169 5.1393 87.2968 99.9427 97.7324 82.9807 33.6293 0 c 0 0 0 0 0 10.0831 10.0556 31.4656 30.2303 0.140528 0 0 0.0572574 0 6.8695 33.1997 0 g 0 0 0 0 0 55.3423 53.9234 1.40767 1.35475 1.74255 0.432783 0 0 0.167973 3.56549 8.1352 0 t 0 0 0 0 0 11.6586 2.84214 64.891 0.851558 0 94.4279 12.7032 0 2.09966 6.58426 25.0358 0

M09672_2.00_shift7 (HOXC5,HOXC6)
; positions_6nt_m4 versus M09672_2.00 (HOXC5,HOXC6); m=21/257; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.766561; -------tmATAAAAcm ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 30.9524 85.7143 0 83.3333 100 88.6905 72.0238 19.6429 43.4524 c 0 0 0 0 0 0 0 19.0476 61.9048 0 0 0 0 7.7381 5.35714 50.5952 31.5476 g 0 0 0 0 0 0 0 0 0 14.2857 0 7.14286 0 0.595238 2.97619 12.5 10.119 t 0 0 0 0 0 0 0 66.6667 7.14286 0 100 9.52381 0 2.97619 19.6429 17.2619 14.881

M05111_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m4 versus M05111_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=22/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.761118; ------GymATWAAac- ; cor=; Ncor= a 0 0 0 0 0 0 10.1076 0 58.1854 91.6367 1.29834 71.4686 98.4293 94.9747 61.6287 19.037 0 c 0 0 0 0 0 0 6.23039 59.7592 37.84 1.82145 0 0.580232 0 4.73278 14.4755 40.2856 0 g 0 0 0 0 0 0 80.0538 0 0 4.84864 0.0276243 0 0 0 10.4382 17.8331 0 t 0 0 0 0 0 0 3.60825 40.2408 3.97459 1.69318 98.674 27.9512 1.57068 0.292475 13.4576 22.8443 0

M05112_2.00_rc_shift6 (HOXC6,HOXD10_rc)
; positions_6nt_m4 versus M05112_2.00_rc (HOXC6,HOXD10_rc); m=23/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.750301; ------GymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 0 4.5835 0 58.1965 98.303 0.710702 79.0613 100 97.0973 60.4787 18.9474 0 c 0 0 0 0 0 0 0 57.702 39.0591 0 0 0 0 2.04415 15.2024 37.4316 0 g 0 0 0 0 0 0 94.6592 0 1.9603 1.69702 0 0 0 0 11.7647 16.5895 0 t 0 0 0 0 0 0 0.757274 42.298 0.784122 0 99.2893 20.9387 0 0.858545 12.5541 27.0316 0

M05119_2.00_shift5 (HOXC6,HOXD10)
; positions_6nt_m4 versus M05119_2.00 (HOXC6,HOXD10); m=24/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.748059; -----gGYAATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 23.2891 9.95851 0 77.8219 100 2.1978 91.5809 100 99.5931 88.7579 29.6221 0 c 0 0 0 0 0 11.5424 8.79668 30.4392 22.1781 0 0 0 0 0 9.15684 34.525 0 g 0 0 0 0 0 50.8682 81.2448 0 0 0 0 0 0 0 2.08522 8.27375 0 t 0 0 0 0 0 14.3003 0 69.5608 0 0 97.8022 8.41908 0 0.406918 0 27.5792 0

M03135_2.00_rc_shift6 (HOXC12_rc)
; positions_6nt_m4 versus M03135_2.00_rc (HOXC12_rc); m=25/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.746962; ------gyAATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 18.1119 1.02681 74.4832 89.3568 11.6416 84.6756 97.574 97.3543 77.8879 0 0 c 0 0 0 0 0 0 11.7285 38.5625 11.9509 1.18832 0 1.12607 0.0846262 1.12581 8.57915 0 0 g 0 0 0 0 0 0 66.5064 0.34227 11.025 7.98243 0.0510595 0.709914 0.0564175 0.168871 5.56181 0 0 t 0 0 0 0 0 0 3.65314 60.0685 2.54091 1.47249 88.3074 13.4884 2.28491 1.35097 7.97118 0 0

M05124_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m4 versus M05124_2.00_rc (HOXD13_rc); m=26/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.745035; -----rsyAATAAAac- ; cor=; Ncor= a 0 0 0 0 0 36.4912 17.084 2.31729 71.1932 95.1301 0 87.0574 98.8904 94.0633 59.6902 23.8596 0 c 0 0 0 0 0 24.2105 48.9194 63.5472 18.7718 0 0 0 0 2.90237 20.3851 45.5439 0 g 0 0 0 0 0 28.9825 28.9194 0.935829 0 1.33422 0 0.610501 0 0.395778 3.9347 8.77193 0 t 0 0 0 0 0 10.3158 5.07719 33.1996 10.0349 3.53569 100 12.3321 1.10957 2.63852 15.99 21.8246 0

M04979_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m4 versus M04979_2.00_rc (HOXA13_rc); m=27/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.742339; -----asYAATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 30.6698 7.80094 0.940975 74.6491 94.9777 0 96.376 95.9414 94.5556 70.5638 30.4462 0 c 0 0 0 0 0 24.9119 57.2293 72.7973 17.0175 0 0 0 0 2.11111 18.6567 44.007 0 g 0 0 0 0 0 22.7967 28.1103 0 0 2.79018 0 0 0 0 3.56551 6.3867 0 t 0 0 0 0 0 21.6216 6.85945 26.2618 8.33333 2.23214 100 3.62401 4.05862 3.33333 7.21393 19.1601 0

M05106_2.00_rc_shift6 (HOXC5,HOXC6,HOXD9_rc)
; positions_6nt_m4 versus M05106_2.00_rc (HOXC5,HOXC6,HOXD9_rc); m=28/257; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.740505; ------GymATwAAac- ; cor=; Ncor= a 0 0 0 0 0 0 13.8921 0.833611 52.2121 80.5525 1.84818 67.5449 95.7502 89.0153 50.5524 15.0639 0 c 0 0 0 0 0 0 8.66215 60.5869 41.0639 8.12568 0 1.83965 0.193175 6.37534 17.1851 43.3759 0 g 0 0 0 0 0 0 69.4373 0 1.63272 10.5092 0 1.88508 0 1.25711 15.6383 21.0491 0 t 0 0 0 0 0 0 8.00841 38.5795 5.09129 0.812568 98.1518 28.7304 4.05666 3.35229 16.6242 20.5111 0

M08283_2.00_rc_shift6 (MYNN_rc)
; positions_6nt_m4 versus M08283_2.00_rc (MYNN_rc); m=29/257; ncol2=12; w=0; offset=0; strand=R; shift=6; score=0.736918; ------AaAwTAArAGy ; cor=; Ncor= a 0 0 0 0 0 0 72.0912 67.3742 73.6635 65.8019 1.02201 99.4497 89.0723 63.6006 98.5063 0.0786164 2.27987 c 0 0 0 0 0 0 6.99686 10.1415 8.56918 1.33648 1.96541 0.0786164 1.65094 1.02201 0.0786164 0.707547 34.6698 g 0 0 0 0 0 0 12.3428 12.0283 13.2862 6.68239 3.22327 0.0786164 7.94025 30.8962 1.33648 98.1918 4.16667 t 0 0 0 0 0 0 8.56918 10.456 4.48113 26.1792 93.7893 0.393082 1.33648 4.48113 0.0786164 1.02201 58.8836

M00253_2.00_shift6 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m4 versus M00253_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=30/257; ncol2=11; w=0; offset=0; strand=D; shift=6; score=0.736786; ------tgwATAAwyAa ; cor=; Ncor= a 0 0 0 0 0 0 19.9681 17.6087 26.8585 80.7059 0.028741 89.438 89.8691 59.4016 24.5082 77.74 46.8931 c 0 0 0 0 0 0 19.9681 17.6087 17.8925 0.028741 0.028741 0.028741 10.0734 0.028741 35.6583 7.41999 17.7023 g 0 0 0 0 0 0 19.9681 47.1738 7.32644 19.2366 0.028741 0.028741 0.028741 9.48884 5.06064 7.41999 17.7023 t 0 0 0 0 0 0 40.0957 17.6087 47.9225 0.028741 99.9138 10.5045 0.028741 31.0808 34.7728 7.41999 17.7023

M03206_2.00_shift6 (HOXD12)
; positions_6nt_m4 versus M03206_2.00 (HOXD12); m=31/257; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.733856; ------gYaATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 9.65944 0.627178 67.518 92.9666 11.3384 84.647 99.23 91.6444 75.5311 0 0 c 0 0 0 0 0 0 19.257 27.4564 14.6693 4.95942 0.767263 0.574713 0 4.53333 8.13187 0 0 g 0 0 0 0 0 0 63.839 0.0696864 16.8304 1.62308 0 0.246305 0 1.51111 7.98535 0 0 t 0 0 0 0 0 0 7.24458 71.8467 0.982318 0.450857 87.8943 14.532 0.769971 2.31111 8.35165 0 0

M03132_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M03132_2.00_rc (HOXC11_rc); m=32/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.733755; -----rgymATwAAaw- ; cor=; Ncor= a 0 0 0 0 0 38.2692 23.0514 3.31594 52.1985 76.1924 7.26854 67.8743 90.2529 88.7054 62.8371 36.3894 0 c 0 0 0 0 0 11.2963 15.9764 48.443 32.8983 7.53952 0 1.23626 1.34443 5.41136 12.0348 23.036 0 g 0 0 0 0 0 30.3245 52.0155 1.76738 6.47042 11.4579 0 1.94025 1.02433 1.44722 8.5692 14.7367 0 t 0 0 0 0 0 20.1099 8.95674 46.4737 8.43284 4.81016 92.7315 28.9492 7.37836 4.43605 16.5589 25.8379 0

M04981_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m4 versus M04981_2.00_rc (HOXA13_rc); m=33/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.732039; -----mCYaATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 29.6263 4.7443 1.00566 67.8744 97.316 0 91.7551 98.2517 95.9863 68.5784 27.6444 0 c 0 0 0 0 0 32.8292 69.2545 70.6474 20.1691 0 0 0 0.437063 1.87874 13.1788 36.4444 0 g 0 0 0 0 0 18.0605 20.5176 0 0.966184 0.865801 0 0 0.786713 0 5.2471 11.5556 0 t 0 0 0 0 0 19.484 5.48367 28.347 10.9903 1.81818 100 8.2449 0.524476 2.13493 12.9957 24.3556 0

M05085_2.00_shift5 (HOXC12)
; positions_6nt_m4 versus M05085_2.00 (HOXC12); m=34/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.730886; -----rGYAATAAAAh- ; cor=; Ncor= a 0 0 0 0 0 29.9584 13.2716 0 71.8475 90.7407 0 79.5455 90.7407 96.4567 68.2451 32.2449 0 c 0 0 0 0 0 19.6949 8.02469 28.3626 19.6481 2.22222 0.809717 2.27273 0 0 13.9276 30.6122 0 g 0 0 0 0 0 33.9806 75.6173 0 8.5044 6.66667 0 0.324675 3.33333 0 6.40669 11.4286 0 t 0 0 0 0 0 16.3662 3.08642 71.6374 0 0.37037 99.1903 17.8571 5.92593 3.54331 11.4206 25.7143 0

M03086_2.00_rc_shift5 (HOXA9,HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M03086_2.00_rc (HOXA9,HOXC5,HOXC6_rc); m=35/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.72915; -----rgymATWAAaa- ; cor=; Ncor= a 0 0 0 0 0 27.6187 17.441 1.78031 56.3391 85.3375 4.18998 69.4072 94.4125 89.1122 59.5199 35.9981 0 c 0 0 0 0 0 16.9769 12.6367 44.9965 30.3576 4.63293 0.125585 0.978223 0.405542 6.03934 14.7859 24.9254 0 g 0 0 0 0 0 35.7075 60.2776 0.686525 6.87013 7.31086 0 1.40911 0.856145 1.32908 11.0788 14.6761 0 t 0 0 0 0 0 19.697 9.64471 52.5367 6.43318 2.71866 95.6844 28.2054 4.32579 3.5194 14.6154 24.4004 0

M05395_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m4 versus M05395_2.00_rc (HOXA10,HOXC6_rc); m=36/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.728355; -----gGymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 19.511 5.65533 0 66.6963 99.2672 1.43147 89.1947 100 99.9154 85.0716 29.735 0 c 0 0 0 0 0 9.82813 1.38316 38.8708 31.4553 0 0 0 0 0.0846433 6.3832 32.7484 0 g 0 0 0 0 0 60.4696 92.1695 0.108814 0.968601 0.732821 0 0 0 0 4.02553 14.6073 0 t 0 0 0 0 0 10.1912 0.791969 61.0204 0.879813 0 98.5685 10.8053 0 0 4.51972 22.9094 0

M05397_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m4 versus M05397_2.00_rc (HOXA10,HOXC6_rc); m=37/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.727978; -----gGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 21.045 6.6766 0 66.0948 99.4622 5.32423 83.0042 98.8596 99.3553 73.5419 24.297 0 c 0 0 0 0 0 18.1261 6.05067 40.1512 31.6893 0 0 0.179533 0 0.644699 10.6045 37.0584 0 g 0 0 0 0 0 48.8649 82.6826 0.10803 0.476531 0.537827 0 0.867744 0.0712758 0 5.27572 13.951 0 t 0 0 0 0 0 11.964 4.59016 59.7407 1.73934 0 94.6758 15.9485 1.06914 0 10.5779 24.6936 0

M03196_2.00_rc_shift6 (CDX2_rc)
; positions_6nt_m4 versus M03196_2.00_rc (CDX2_rc); m=38/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.724761; ------gymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 23.0595 3.59152 52.8683 90.4723 1.19469 92.4465 93.1107 92.3303 55.9437 0 0 c 0 0 0 0 0 0 18.4748 51.1034 38.052 0.533881 1.0177 0.96517 0 1.96982 20.6443 0 0 g 0 0 0 0 0 0 53.8357 1.08178 1.11432 8.9117 0.309735 0.125892 0.845309 2.13747 10.2541 0 0 t 0 0 0 0 0 0 4.63005 44.2233 7.96533 0.0821355 97.4779 6.46244 6.04396 3.56245 13.1579 0 0

M04983_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m4 versus M04983_2.00_rc (HOXA13_rc); m=39/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.724119; -----rcCAATAAAmy- ; cor=; Ncor= a 0 0 0 0 0 31.8367 18.2519 0 73.1343 92.1053 0 83.6177 100 98 62.6598 17.551 0 c 0 0 0 0 0 22.8571 62.982 75.6173 8.65672 7.89474 0 0 0 2 25.8312 40.8163 0 g 0 0 0 0 0 26.5306 17.4807 0 0 0 0 0 0 0 7.92839 10.6122 0 t 0 0 0 0 0 18.7755 1.28535 24.3827 18.209 0 100 16.3823 0 0 3.58056 31.0204 0

M05083_2.00_shift5 (HOXC12)
; positions_6nt_m4 versus M05083_2.00 (HOXC12); m=40/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.720746; -----gGYAATAAAay- ; cor=; Ncor= a 0 0 0 0 0 20.4905 12.6547 0 72.209 86.4865 0 82.7211 100 99.0228 67.6307 23.3553 0 c 0 0 0 0 0 15.5063 3.71389 26.2136 21.1401 0 0.490998 1.08844 0 0.977199 10.2336 31.25 0 g 0 0 0 0 0 48.1013 83.6314 0 5.70071 13.5135 0 0 0 0 8.45384 13.9803 0 t 0 0 0 0 0 15.9019 0 73.7864 0.950119 0 99.509 16.1905 0 0 13.6819 31.4145 0

M05341_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M05341_2.00_rc (HOXC10,HOXC6_rc); m=41/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.718135; -----rGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 28.4666 0 0 67.4123 100 4.503 94.1467 99.6173 100 95.5289 19.4969 0 c 0 0 0 0 0 12.2599 0 46.1753 32.5877 0 0 0 0.208768 0 1.66834 45.5276 0 g 0 0 0 0 0 46.1404 100 0 0 0 0 0 0.173974 0 0 11.4605 0 t 0 0 0 0 0 13.1331 0 53.8247 0 0 95.497 5.85334 0 0 2.8028 23.515 0

M05339_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M05339_2.00_rc (HOXC10,HOXC6_rc); m=42/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.717794; -----gGymATAAAAy- ; cor=; Ncor= a 0 0 0 0 0 22.6127 5.74952 0 63.9614 99.3696 1.03513 88.3101 100 100 78.5666 21.8107 0 c 0 0 0 0 0 15.0351 0.256246 46.2963 36.0386 0 0 0 0 0 9.26849 38.4259 0 g 0 0 0 0 0 46.4255 93.4017 0 0 0.630431 0 0 0 0 4.27051 13.9918 0 t 0 0 0 0 0 15.9266 0.592569 53.7037 0 0 98.9649 11.6899 0 0 7.89438 25.7716 0

M03134_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M03134_2.00_rc (HOXC11_rc); m=43/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.71633; -----rgymATAAAam- ; cor=; Ncor= a 0 0 0 0 0 37.6102 17.3513 1.68067 46.2619 83.0757 7.16814 73.4675 91.8165 90.1943 66.3849 37.3777 0 c 0 0 0 0 0 13.4182 15.0828 57.8898 42.9089 0.895037 0 5.3065 0 6.00707 14.0442 26.0274 0 g 0 0 0 0 0 32.9089 62.5996 2.98786 7.65745 9.03173 2.47788 1.18939 0.44964 0 5.0065 17.319 0 t 0 0 0 0 0 16.0627 4.96628 37.4416 3.17173 6.99756 90.354 20.0366 7.73381 3.79859 14.5644 19.2759 0

M05337_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M05337_2.00_rc (HOXC10,HOXC6_rc); m=44/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.715766; -----gGymATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 19.8486 7.35184 0 60.3247 100 2.13992 90.6941 99.3317 99.8321 75.6843 18.587 0 c 0 0 0 0 0 21.9512 1.80045 45.8754 39.5231 0 0 0 0.668338 0 13.4309 40.286 0 g 0 0 0 0 0 43.9024 89.1973 0 0.152207 0 0 0 0 0.167926 3.50095 20.6056 0 t 0 0 0 0 0 14.2977 1.65041 54.1246 0 0 97.8601 9.30587 0 0 7.38383 20.5214 0

M09433_2.00_shift7 (TBPL2)
; positions_6nt_m4 versus M09433_2.00 (TBPL2); m=45/257; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.713382; -------sTATAAAArs ; cor=; Ncor= a 0 0 0 0 0 0 0 16.4 13.4 76.8 3.6 91.4 85.2 94.6 76.2 40.8 11.4 c 0 0 0 0 0 0 0 50.4 11.4 1.6 4.4 3 1.8 0 0.6 1.8 37 g 0 0 0 0 0 0 0 27.4 4.8 2.4 10.2 3.6 1 5 7.2 53.8 43 t 0 0 0 0 0 0 0 5.8 70.4 19.2 81.8 2 12 0.4 16 3.6 8.6

M03115_2.00_rc_shift6 (CDX1_rc)
; positions_6nt_m4 versus M03115_2.00_rc (CDX1_rc); m=46/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.711747; ------gymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 24.1104 3.01607 51.1102 90.5753 0.300623 83.257 90.3634 86.9084 50.1402 0 0 c 0 0 0 0 0 0 16.7889 53.6736 38.8151 1.30872 0.128838 2.69324 0.721037 4.59188 18.8376 0 0 g 0 0 0 0 0 0 52.9545 0.198288 1.9296 7.3933 0 1.00548 0.760012 2.39903 13.554 0 0 t 0 0 0 0 0 0 6.14622 43.1121 8.14506 0.722727 99.5705 13.0443 8.15551 6.10065 17.4682 0 0

M03773_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M03773_2.00_rc (HOXC5,HOXC6_rc); m=47/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.711239; -----rGymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 43.5344 8.4259 0 55.9181 95.4386 0.691069 76.9416 99.2712 97.0896 74.5341 32.1098 0 c 0 0 0 0 0 9.31406 3.73973 55.9107 36.6758 1.26259 0 0 0 2.05657 10.6868 34.5186 0 g 0 0 0 0 0 35.5433 85.9481 0 1.68477 3.06525 0 0.517769 0 0.215309 4.33172 9.27583 0 t 0 0 0 0 0 11.6082 1.8863 44.0893 5.72137 0.233543 99.3089 22.5406 0.728763 0.638503 10.4474 24.0957 0

M05072_2.00_rc_shift5 (HOXC13_rc)
; positions_6nt_m4 versus M05072_2.00_rc (HOXC13_rc); m=48/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.705976; -----vsCmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 25.2271 6.89233 0 66.8537 100 0 99.1678 100 100 64.1256 6.78322 0 c 0 0 0 0 0 31.4465 58.3197 86.9301 25.9 0 0 0.832178 0 0 23.1839 58.1119 0 g 0 0 0 0 0 30.6778 28.4666 0 0.233754 0 0 0 0 0 3.5426 13.6364 0 t 0 0 0 0 0 12.6485 6.32137 13.0699 7.01262 0 100 0 0 0 9.14798 21.4685 0

M05078_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M05078_2.00_rc (HOXC11_rc); m=49/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.70484; -----rgymATAAAam- ; cor=; Ncor= a 0 0 0 0 0 32.6068 14.0663 0 44.0869 91.452 0 75.0962 99.2376 96.5389 62.48 26.7136 0 c 0 0 0 0 0 13.993 15.8044 47.7927 48.6311 0.87822 0 1.25 0 2.47219 15.28 37.476 0 g 0 0 0 0 0 35.4839 63.1366 0 1.35478 7.37705 0 0 0.508259 0.123609 5.4 14.8623 0 t 0 0 0 0 0 17.9163 6.99272 52.2073 5.92718 0.29274 100 23.6538 0.25413 0.865266 16.84 20.9481 0

M03209_2.00_rc_shift6 (HOXD12_rc)
; positions_6nt_m4 versus M03209_2.00_rc (HOXD12_rc); m=50/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.704795; ------GyrATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 12.7279 3.31256 60.4093 87.2114 8.31376 68.6161 93.84 90.9047 58.1947 0 0 c 0 0 0 0 0 0 13.9933 34.2079 12.7598 3.73961 0.892438 1.6709 0.496771 4.5717 15.2187 0 0 g 0 0 0 0 0 0 70.3015 0.524762 26.8308 7.84857 2.0667 3.55975 0 1.49182 12.2304 0 0 t 0 0 0 0 0 0 2.9773 61.9547 0 1.20037 88.7271 26.1533 5.66319 3.03176 14.3561 0 0

M05201_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m4 versus M05201_2.00_rc (HOXB13_rc); m=51/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.701123; -----cCCmATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 21.972 4.75647 0.807409 63.2717 99.3572 0 98.4709 99.9224 99.8708 74.5946 16.8219 0 c 0 0 0 0 0 44.7723 73.516 91.7597 27.493 0 0 0 0 0 15.0965 52.3551 0 g 0 0 0 0 0 20.0828 16.0769 0 0.294744 0.411417 0 0 0 0.129232 3.35907 8.46273 0 t 0 0 0 0 0 13.1729 5.65068 7.43291 8.94056 0.231422 100 1.52905 0.0775795 0 6.94981 22.3602 0

M11389_2.00_shift6 (TBP,TBPL2)
; positions_6nt_m4 versus M11389_2.00 (TBP,TBPL2); m=52/257; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.699943; ------yCTWTAAAAr- ; cor=; Ncor= a 0 0 0 0 0 0 22.4551 0 2.46821 72.9993 0 100 92.8144 100 100 29.3413 0 c 0 0 0 0 0 0 29.1168 76.2154 24.9065 0 0 0 0 0 0 10.1796 0 g 0 0 0 0 0 0 18.5629 19.8953 0 0 0 0 0 0 0 45.7335 0 t 0 0 0 0 0 0 29.8653 3.8893 72.6253 27.0007 100 0 7.18563 0 0 14.7455 0

M07551_2.00_rc_shift5 (CTCF_rc)
; positions_6nt_m4 versus M07551_2.00_rc (CTCF_rc); m=53/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.699943; -----AAAAAyAAAAR- ; cor=; Ncor= a 0 0 0 0 0 100 100 100 73.6842 94.7368 15.7895 100 78.9474 100 84.2105 68.4211 0 c 0 0 0 0 0 0 0 0 10.5263 0 26.3158 0 15.7895 0 10.5263 0 0 g 0 0 0 0 0 0 0 0 10.5263 5.2632 5.2632 0 0 0 0 31.5789 0 t 0 0 0 0 0 0 0 0 5.2632 0 52.6316 0 5.2632 0 5.2632 0 0

M04900_2.00_rc_shift5 (HOXA11_rc)
; positions_6nt_m4 versus M04900_2.00_rc (HOXA11_rc); m=54/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.698236; -----rGymATAAAay- ; cor=; Ncor= a 0 0 0 0 0 34.1365 3.94737 0 49.2754 86.7347 0 80.1887 97.1429 93.9227 60.9319 20.5882 0 c 0 0 0 0 0 12.0482 13.5965 50 44.6377 0 0 0 0 2.20994 8.96057 30.5882 0 g 0 0 0 0 0 34.1365 74.5614 0 3.47826 10.7143 0 0 0 0 17.5627 11.7647 0 t 0 0 0 0 0 19.6787 7.89474 50 2.6087 2.55102 100 19.8113 2.85714 3.8674 12.5448 37.0588 0

M03581_2.00_shift8 (CPEB1)
; positions_6nt_m4 versus M03581_2.00 (CPEB1); m=55/257; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.697681; --------aATAAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 52.5709 82.7471 0.557007 98.1526 94.9235 93.8347 99.42 51.6227 0 c 0 0 0 0 0 0 0 0 5.13649 1.33908 0 0 0 0.104275 0 9.00192 0 g 0 0 0 0 0 0 0 0 24.9502 13.7299 0.433228 1.26116 0.599947 3.30422 0.58003 24.9787 0 t 0 0 0 0 0 0 0 0 17.3424 2.18391 99.0098 0.58627 4.47653 2.75678 0 14.3967 0

M05335_2.00_rc_shift5 (HOXC10,HOXC6_rc)
; positions_6nt_m4 versus M05335_2.00_rc (HOXC10,HOXC6_rc); m=56/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.695901; -----gGymATAAAac- ; cor=; Ncor= a 0 0 0 0 0 18.8 13.1285 0 50 88.968 0 77.2201 100 95.8773 56.4334 16.9 0 c 0 0 0 0 0 23.9 10.6145 58.8412 43.95 3.73665 0 0.15444 0 3.54746 19.6953 43.8 0 g 0 0 0 0 0 40.3 69.8324 0 2.65 5.78292 0 0.15444 0 0.575264 10.4966 17.5 0 t 0 0 0 0 0 17 6.42458 41.1588 3.4 1.51246 100 22.471 0 0 13.3747 21.8 0

M08420_2.00_rc_shift5 (M08420_2.00_rc)
; positions_6nt_m4 versus M08420_2.00_rc; m=57/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.69552; -----rgymATAAAAm- ; cor=; Ncor= a 0 0 0 0 0 37.0821 24.9674 0 32.3491 91.9236 0 97.0908 100 100 71.0812 45.419 0 c 0 0 0 0 0 0 14.8068 64.3074 64.0469 0 4.12505 0 0 0 4.99349 32.7833 0 g 0 0 0 0 0 49.6309 60.2258 0 0 8.07642 0 0 0 0 6.38298 0 0 t 0 0 0 0 0 13.287 0 35.6926 3.60399 0 95.8749 2.90925 0 0 17.5423 21.7977 0

M05129_2.00_rc_shift5 (CDX4_rc)
; positions_6nt_m4 versus M05129_2.00_rc (CDX4_rc); m=58/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.694711; -----gGymATAAAac- ; cor=; Ncor= a 0 0 0 0 0 15.8899 9.35999 0 52.9731 100 0 100 100 99.7567 63.4025 11.6185 0 c 0 0 0 0 0 9.53909 3.93171 62.8295 46.92 0 0 0 0 0.24334 17.6177 49.0157 0 g 0 0 0 0 0 52.0221 86.3462 0 0.10687 0 0 0 0 0 5.88251 16.0818 0 t 0 0 0 0 0 22.5489 0.362131 37.1705 0 0 100 0 0 0 13.0973 23.284 0

M04977_2.00_rc_shift5 (HOXA13_rc)
; positions_6nt_m4 versus M04977_2.00_rc (HOXA13_rc); m=59/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.692259; -----vCCMATAAAAc- ; cor=; Ncor= a 0 0 0 0 0 30.8499 4.95673 0 70.7715 100 0 98.2492 99.8953 100 72.4374 15.68 0 c 0 0 0 0 0 36.8311 75.059 94.6429 29.2285 0 0 0 0 0 18.6029 60.64 0 g 0 0 0 0 0 30.4302 19.9843 0 0 0 0 1.75077 0.104712 0 2.73349 8.16 0 t 0 0 0 0 0 1.88877 0 5.35714 0 0 100 0 0 0 6.22627 15.52 0

M05076_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M05076_2.00_rc (HOXC11_rc); m=60/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.691828; -----rGymATWAAah- ; cor=; Ncor= a 0 0 0 0 0 30.2594 12.2415 0 44.0268 85.3491 0 73.2003 99.5993 97.9851 63.1921 26.2852 0 c 0 0 0 0 0 11.8156 10.8072 46.5802 47.963 2.82335 0.0893256 0.719895 0 0.175208 12.5141 32.4989 0 g 0 0 0 0 0 41.3705 74.6164 0 3.32612 11.8275 0 0 0 0 7.23164 16.1824 0 t 0 0 0 0 0 16.5546 2.33489 53.4198 4.68412 0 99.9107 26.0798 0.400712 1.83968 17.0621 25.0335 0

M08090_2.00_rc_shift5 (ZNF384_rc)
; positions_6nt_m4 versus M08090_2.00_rc (ZNF384_rc); m=61/257; ncol2=12; w=-1; offset=-1; strand=R; shift=5; score=0.69127; -----wwwmAAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 31.0847 29.9543 31.2884 43.1275 99.7404 99.2048 98.8138 99.4053 99.241 99.9113 66.7762 62.1562 c 0 0 0 0 0 16.2488 23.0835 11.3561 25.2719 0.0230013 0.115007 0.069004 0.0427168 0.0854336 0.0197154 9.55542 13.022 g 0 0 0 0 0 18.5654 16.8666 15.3715 15.5128 0.0427168 0.0624322 0.0854336 0.0492886 0.0460027 0 9.0921 9.52256 t 0 0 0 0 0 34.1011 30.0956 41.984 16.0878 0.193868 0.61775 1.03177 0.502744 0.627608 0.069004 14.5763 15.2992

M03275_2.00_rc_shift5 (M03275_2.00_rc)
; positions_6nt_m4 versus M03275_2.00_rc; m=62/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.690335; -----rgymATwAAah- ; cor=; Ncor= a 0 0 0 0 0 25.2475 17.3719 0 43.6285 72.2719 6.91244 58.4323 94.6136 91.8182 56.9014 28.2178 0 c 0 0 0 0 0 18.5644 23.3853 52.3342 45.0324 16.6369 0 3.32542 0 7.04545 19.2958 25.2475 0 g 0 0 0 0 0 39.604 44.9889 0.982801 8.09935 10.9123 0 0.950119 0 0.909091 10.7042 17.8218 0 t 0 0 0 0 0 16.5842 14.2539 46.683 3.23974 0.178891 93.0876 37.2922 5.38642 0.227273 13.0986 28.7129 0

M05080_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M05080_2.00_rc (HOXC11_rc); m=63/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.683885; -----rgymATwAAam- ; cor=; Ncor= a 0 0 0 0 0 28.7001 11.8873 2.21811 41.5228 78.7202 0 67.2173 95.8333 95.3153 58.5825 26.9811 0 c 0 0 0 0 0 14.6718 16.6667 59.7043 48.2732 6.84524 0 4.7014 0 0.900901 17.165 34.3396 0 g 0 0 0 0 0 39.3822 64.8284 0.184843 4.23862 13.9881 0.56391 0 0.181159 2.16216 6.97674 16.9811 0 t 0 0 0 0 0 17.2458 6.61765 37.8928 5.96546 0.446429 99.4361 28.0813 3.98551 1.62162 17.2757 21.6981 0

M05401_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m4 versus M05401_2.00_rc (HOXA10,HOXC6_rc); m=64/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.683719; -----sgymATWAAay- ; cor=; Ncor= a 0 0 0 0 0 16.0587 15.9703 0 51.6077 88.7441 1.01322 68.2979 95.3331 89.3795 42.126 16.4146 0 c 0 0 0 0 0 26.7349 13.359 51.0458 40.0092 2.48815 0 0.668693 0.466695 6.88146 24.2782 38.2117 0 g 0 0 0 0 0 34.4751 61.7647 0 3.55994 8.76777 0 1.00304 0 0 16.5917 20.0623 0 t 0 0 0 0 0 22.7313 8.90599 48.9542 4.82315 0 98.9868 30.0304 4.20025 3.73906 17.0041 25.3114 0

M04898_2.00_rc_shift5 (HOXA11_rc)
; positions_6nt_m4 versus M04898_2.00_rc (HOXA11_rc); m=65/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.683282; -----rgymATaAAah- ; cor=; Ncor= a 0 0 0 0 0 26.5446 10.8647 1.67224 42.0144 74.6803 0 66.8192 96.0526 91.25 57.0312 25.256 0 c 0 0 0 0 0 15.5606 18.1818 49.8328 45.7554 4.85934 0 4.11899 0.657895 7.5 13.8672 33.7884 0 g 0 0 0 0 0 40.5034 64.745 0.334448 7.76978 18.4143 0 4.11899 0 0 10.1562 9.21502 0 t 0 0 0 0 0 17.3913 6.20843 48.1605 4.46043 2.04604 100 24.9428 3.28947 1.25 18.9453 31.7406 0

M00298_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m4 versus M00298_2.00_rc (HOXD13_rc); m=66/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.68146; ------cyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 19.2222 16.3719 33.1819 64.2146 3.11498 60.0605 79.1532 75.984 40.5661 0 0 c 0 0 0 0 0 0 36.0918 39.8678 29.7255 2.29844 6.2728 4.32907 3.03857 8.17044 20.347 0 0 g 0 0 0 0 0 0 21.6729 9.44578 6.76664 28.0007 0.0332474 6.08211 5.11095 4.01695 14.4824 0 0 t 0 0 0 0 0 0 23.0131 34.3145 30.326 5.48617 90.579 29.5284 12.6973 11.8286 24.6046 0 0

M03140_2.00_rc_shift5 (HOXD11_rc)
; positions_6nt_m4 versus M03140_2.00_rc (HOXD11_rc); m=67/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.67576; -----rrymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 32.381 26.6376 7.37705 51.9802 77.2059 6.45161 68.6275 91.3043 88.9831 64.0244 0 0 c 0 0 0 0 0 5.71429 17.4672 38.5246 39.604 5.88235 5.64516 3.92157 0.869565 2.54237 13.4146 0 0 g 0 0 0 0 0 41.9048 45.8515 6.55738 5.44554 11.0294 3.22581 2.61438 5.21739 4.23729 12.8049 0 0 t 0 0 0 0 0 20 10.0437 47.541 2.9703 5.88235 84.6774 24.8366 2.6087 4.23729 9.7561 0 0

M05399_2.00_rc_shift5 (HOXA10,HOXC6_rc)
; positions_6nt_m4 versus M05399_2.00_rc (HOXA10,HOXC6_rc); m=68/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.675063; -----gGymATWAAac- ; cor=; Ncor= a 0 0 0 0 0 20.9528 14.7386 0.0462107 53.1972 85.4941 0 71.7175 95.2863 86.6239 41.8213 20.1572 0 c 0 0 0 0 0 22.2942 8.39869 55.037 39.4245 1.3834 0 1.2931 0 7.60913 21.3457 41.1003 0 g 0 0 0 0 0 38.3904 70.6863 0 6.02558 13.083 0 0.132626 0 0 19.9149 18.4004 0 t 0 0 0 0 0 18.3626 6.17647 44.9168 1.35268 0.0395257 100 26.8568 4.71366 5.76692 16.918 20.3421 0

M05131_2.00_rc_shift5 (CDX4_rc)
; positions_6nt_m4 versus M05131_2.00_rc (CDX4_rc); m=69/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.673158; -----kGCmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 13.5135 2.36453 0 51.5252 100 0 98.4791 96.2825 97.125 54.1086 9.90991 0 c 0 0 0 0 0 19.8198 19.9015 80.0515 44.0981 0 0 1.52091 0 2 23.1894 55.3411 0 g 0 0 0 0 0 41.3127 76.5517 0 0.132626 0 0 0 0 0 10.585 17.6319 0 t 0 0 0 0 0 25.3539 1.18227 19.9485 4.24403 0 100 0 3.71747 0.875 12.117 17.1171 0

M01660_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01660_2.00 (ARID3B,ARID3C); m=70/257; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.669386; -------wwATyAAaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 26.9597 34.5989 98.0846 0.979404 24.5593 78.6967 73.3314 55.7268 36.5112 0 c 0 0 0 0 0 0 0 19.9722 9.24259 0.0894416 1.32206 30.6027 6.02309 7.13484 7.69416 21.0651 0 g 0 0 0 0 0 0 0 22.9735 23.8987 1.74339 1.23268 3.93964 8.21204 7.65217 14.5918 13.703 0 t 0 0 0 0 0 0 0 30.0945 32.2598 0.082565 96.4659 40.8983 7.06817 11.8816 21.9872 28.7207 0

M01656_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01656_2.00 (ARID3B,ARID3C); m=71/257; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.668403; -------ywATyaaaww ; cor=; Ncor= a 0 0 0 0 0 0 0 20.5322 35.1607 81.973 6.90595 18.7905 59.7258 47.2036 41.2054 27.8116 25.7464 c 0 0 0 0 0 0 0 26.3638 13.7347 7.89626 0.49777 37.8394 7.53655 15.5564 16.096 23.9377 23.0645 g 0 0 0 0 0 0 0 24.8285 24.5308 5.62033 3.26214 9.8095 16.9415 21.2099 22.8413 22.3193 22.1601 t 0 0 0 0 0 0 0 28.2754 26.5739 4.51042 89.3341 33.5606 15.7961 16.0301 19.8573 25.9314 29.029

M00115_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M00115_2.00 (ARID3B,ARID3C); m=72/257; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.663935; -------ywATyAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.6578 37.8326 93.2211 10.9459 19.8441 70.8755 60.7308 51.9306 34.7377 0 c 0 0 0 0 0 0 0 26.7115 8.9636 2.00366 5.71426 33.3784 5.64588 10.0387 10.8039 20.2433 0 g 0 0 0 0 0 0 0 23.2219 24.6105 2.44727 9.42122 11.3351 13.8866 14.1039 18.7259 18.501 0 t 0 0 0 0 0 0 0 25.4088 28.5933 2.32792 73.9186 35.4424 9.59196 15.1265 18.5396 26.518 0

M09100_2.00_shift6 (FOXI2,FOXI3)
; positions_6nt_m4 versus M09100_2.00 (FOXI2,FOXI3); m=73/257; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.661787; ------wAaAyAAAyA- ; cor=; Ncor= a 0 0 0 0 0 0 32.058 73.8786 66.4908 80.7388 0 100 100 97.6253 4.74934 97.6253 0 c 0 0 0 0 0 0 13.0607 23.7467 0 0 45.1187 0 0 2.37467 64.3799 0 0 g 0 0 0 0 0 0 8.31135 2.37467 21.6359 19.2612 0 0 0 0 0 2.37467 0 t 0 0 0 0 0 0 46.5699 0 11.8734 0 54.8813 0 0 0 30.8707 0 0

M09084_2.00_shift6 (FOXI2,FOXI3,FOXJ2)
; positions_6nt_m4 versus M09084_2.00 (FOXI2,FOXI3,FOXJ2); m=74/257; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.661787; ------wAaAyAAAyA- ; cor=; Ncor= a 0 0 0 0 0 0 32.058 73.8786 66.4908 80.7388 0 100 100 97.6253 4.74934 97.6253 0 c 0 0 0 0 0 0 13.0607 23.7467 0 0 45.1187 0 0 2.37467 64.3799 0 0 g 0 0 0 0 0 0 8.31135 2.37467 21.6359 19.2612 0 0 0 0 0 2.37467 0 t 0 0 0 0 0 0 46.5699 0 11.8734 0 54.8813 0 0 0 30.8707 0 0

M02081_2.00_rc_shift7 (M02081_2.00_rc)
; positions_6nt_m4 versus M02081_2.00_rc; m=75/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.661306; -------ymATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.41741 56.0196 75.7832 1.91671 87.2453 93.6131 93.0367 55.7574 0 0 c 0 0 0 0 0 0 0 29.9047 25.5318 1.27993 1.27993 0.0063678 0.0063678 0.701194 13.466 0 0 g 0 0 0 0 0 0 0 0.943572 0.00709019 9.55807 0.0063678 0.643148 1.27993 1.39545 4.81546 0 0 t 0 0 0 0 0 0 0 60.7343 18.4416 13.3788 96.797 12.1052 5.10061 4.8667 25.9612 0 0

M01658_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01658_2.00 (ARID3B,ARID3C); m=76/257; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.659362; -------twAThAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.9746 36.7305 99.9306 1.14163 26.0879 72.5817 63.6466 48.9639 31.0029 0 c 0 0 0 0 0 0 0 22.825 11.5145 0.0100969 1.06445 31.2329 5.6673 10.2098 10.709 22.5127 0 g 0 0 0 0 0 0 0 22.5979 22.2782 0.0207435 1.01253 4.91097 10.2237 12.2233 17.6561 18.4318 0 t 0 0 0 0 0 0 0 29.6025 29.4769 0.0385606 96.7814 37.7683 11.5272 13.9203 22.6709 28.0526 0

M00394_2.00_rc_shift6 (M00394_2.00_rc)
; positions_6nt_m4 versus M00394_2.00_rc; m=77/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.658064; ------cymrtaAaw-- ; cor=; Ncor= a 0 0 0 0 0 0 20.9474 16.1811 29.3897 46.8319 10.3931 51.8823 69.4873 63.7168 36.6209 0 0 c 0 0 0 0 0 0 37.4129 31.9395 34.8357 9.93997 14.8967 10.4749 4.76427 11.64 20.71 0 0 g 0 0 0 0 0 0 24.8291 12.4764 11.7123 32.6735 13.0807 13.8596 11.1467 8.45238 15.8096 0 0 t 0 0 0 0 0 0 16.8107 39.403 24.0622 10.5546 61.6295 23.7832 14.6018 16.1909 26.8595 0 0

M09149_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m4 versus M09149_2.00_rc (HOXB13_rc); m=78/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.657951; -----rsyhATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 25.6 6.8 8.6 40.4 87.4 0 93.6 99.4 96.6 72.4 0 0 c 0 0 0 0 0 16.8 50 65.6 32.4 0.2 3.4 2.6 0.2 1.8 10 0 0 g 0 0 0 0 0 38.4 33 0.8 1 10 2.2 2.4 0.4 0.6 10.8 0 0 t 0 0 0 0 0 19.2 10.2 25 26.2 2.4 94.4 1.4 0 1 6.8 0 0

M00300_2.00_rc_shift7 (HOXD13_rc)
; positions_6nt_m4 versus M00300_2.00_rc (HOXD13_rc); m=79/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.656573; -------yaATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5.66767 56.925 72.5366 1.95404 85.0493 94.7871 91.6482 59.3923 0 0 c 0 0 0 0 0 0 0 27.3576 24.8176 0.659958 0.655674 0.00649182 0.00649182 1.39545 11.8864 0 0 g 0 0 0 0 0 0 0 0.0094304 0.00729714 16.3421 0.00649182 0.655674 0.00649182 1.39545 7.92755 0 0 t 0 0 0 0 0 0 0 66.9653 18.2501 10.4613 97.3838 14.2885 5.19995 5.56096 20.7937 0 0

M00295_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m4 versus M00295_2.00_rc (HOXD13_rc); m=80/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.65445; ------syhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 22.0709 14.9918 31.8881 54.975 3.48303 55.5205 74.4062 65.4176 36.2227 0 0 c 0 0 0 0 0 0 36.0267 35.7842 32.8592 4.74399 9.09663 6.46726 3.12533 12.0708 21.9702 0 0 g 0 0 0 0 0 0 25.3876 10.4594 8.34976 33.344 1.11394 10.9874 6.35689 7.62011 17.2823 0 0 t 0 0 0 0 0 0 16.5148 38.7645 26.9029 6.93706 86.3064 27.0247 16.1116 14.8915 24.5248 0 0

M01245_2.00_rc_shift5 (HOXC6_rc)
; positions_6nt_m4 versus M01245_2.00_rc (HOXC6_rc); m=81/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.654216; -----rrymATwAaa-- ; cor=; Ncor= a 0 0 0 0 0 29.3248 25.0798 14.0728 46.7929 76.0399 5.28815 55.7886 75.9063 67.0431 47.4445 0 0 c 0 0 0 0 0 17.089 20.5336 32.5978 32.9744 6.89819 6.65566 5.26757 4.80424 11.8857 16.4374 0 0 g 0 0 0 0 0 33.7316 38.5541 6.13644 8.80862 14.1719 2.81642 4.76629 5.00031 5.96158 15.6358 0 0 t 0 0 0 0 0 19.8546 15.8325 47.193 11.4242 2.89001 85.2398 34.1776 14.2891 15.1097 20.4823 0 0

M05018_2.00_rc_shift5 (CDX1_rc)
; positions_6nt_m4 versus M05018_2.00_rc (CDX1_rc); m=82/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.653637; -----gGYmATAAAac- ; cor=; Ncor= a 0 0 0 0 0 17.0851 8.8375 0 37.9113 100 0 99.9474 100 99.9001 60.7353 9.38043 0 c 0 0 0 0 0 13.0059 0 70.2284 61.9416 0 0 0 0 0 23.0946 56.2878 0 g 0 0 0 0 0 46.234 91.1481 0.00526371 0.147167 0 0 0.0526094 0 0.0999106 5.39322 14.1759 0 t 0 0 0 0 0 23.6749 0.0143933 29.7663 0 0 100 0 0 0 10.7769 20.1558 0

M05122_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m4 versus M05122_2.00_rc (HOXD13_rc); m=83/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.653096; -----ssCMATAAAmC- ; cor=; Ncor= a 0 0 0 0 0 12.2283 8.53018 0 72.4409 98.6595 1.60428 100 96.8421 83.4467 58.4127 16.3043 0 c 0 0 0 0 0 49.4565 48.294 100 27.5591 0 0 0 0 16.5533 39.5238 82.337 0 g 0 0 0 0 0 35.0543 43.1759 0 0 1.34048 0 0 3.15789 0 2.06349 0.815217 0 t 0 0 0 0 0 3.26087 0 0 0 0 98.3957 0 0 0 0 0.543478 0

M01680_2.00_shift6 (M01680_2.00)
; positions_6nt_m4 versus M01680_2.00; m=84/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.652745; ------AAAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 99.0132 99.2574 99.2574 99.2574 25 99.2574 99.2574 99.0132 0 0 0 c 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 0 0 0 g 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 0 0 0 t 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 74.505 0.247525 0.247525 0.328947 0 0 0

M00299_2.00_rc_shift6 (HOXD13_rc)
; positions_6nt_m4 versus M00299_2.00_rc (HOXD13_rc); m=85/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.651166; ------syhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 21.8939 14.6424 31.4466 53.0003 5.01695 55.227 74.4324 66.2348 36.427 0 0 c 0 0 0 0 0 0 36.097 36.3765 32.73 5.42109 9.80432 6.62898 2.80076 12.2216 21.8742 0 0 g 0 0 0 0 0 0 25.951 10.7394 8.48494 34.4772 0.164117 11.2622 6.48759 6.91164 17.0357 0 0 t 0 0 0 0 0 0 16.058 38.2416 27.3384 7.10144 85.0146 26.8819 16.2793 14.6319 24.6631 0 0

M03282_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M03282_2.00_rc (HOXC5,HOXC6_rc); m=86/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.650167; ------scmATwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 14.9888 23.1231 32.4675 71.6312 0 58.5507 81.4516 81.4516 66.8317 0 0 c 0 0 0 0 0 0 45.1902 60.6607 65.5844 0 6.48148 8.69565 14.1129 4.43548 14.3564 0 0 g 0 0 0 0 0 0 33.1096 0 1.94805 18.7943 0 0 0 0 15.3465 0 0 t 0 0 0 0 0 0 6.71141 16.2162 0 9.57447 93.5185 32.7536 4.43548 14.1129 3.46535 0 0

M07646_2.00_rc_shift7 (ZNF613_rc)
; positions_6nt_m4 versus M07646_2.00_rc (ZNF613_rc); m=87/257; ncol2=9; w=0; offset=1; strand=R; shift=7; score=0.646866; -------WAAAAAAAk- ; cor=; Ncor= a 0 0 0 0 0 0 0 74.5082 99.7541 96.1475 90.5738 97.7869 78.1148 94.5082 82.7049 9.91803 0 c 0 0 0 0 0 0 0 0.0819672 0.0819672 0.0819672 0.0819672 0.0819672 21.7213 0.0819672 0.0819672 18.1148 0 g 0 0 0 0 0 0 0 0.0819672 0.0819672 0.0819672 5.65574 2.04918 0.0819672 1.06557 7.95082 42.377 0 t 0 0 0 0 0 0 0 25.3279 0.0819672 3.68852 3.68852 0.0819672 0.0819672 4.34426 9.2623 29.5902 0

M03780_2.00_rc_shift4 (M03780_2.00_rc)
; positions_6nt_m4 versus M03780_2.00_rc; m=88/257; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.646493; ----rrGymATAAAac- ; cor=; Ncor= a 0 0 0 0 33.9388 32.221 9.80551 0.066211 49.8478 99.6049 0 99.7081 99.2998 98.8732 63.7915 22.8987 0 c 0 0 0 0 13.8922 8.8651 3.84263 67.8449 48.8544 0.144241 0 0 0.0125043 0.476235 16.1242 33.6429 0 g 0 0 0 0 41.3492 38.8195 83.1479 0 0.120834 0.250854 0 0 0 0.143182 6.4377 19.524 0 t 0 0 0 0 10.8197 20.0944 3.20394 32.0889 1.17695 0 100 0.29192 0.687736 0.507361 13.6467 23.9344 0

M09432_2.00_shift7 (TBP,TBPL2)
; positions_6nt_m4 versus M09432_2.00 (TBP,TBPL2); m=89/257; ncol2=10; w=0; offset=1; strand=D; shift=7; score=0.641826; -------mTATAAAars ; cor=; Ncor= a 0 0 0 0 0 0 0 28.1879 4.69799 81.2081 4.69799 85.906 71.1409 77.1812 59.7315 39.5973 7.38255 c 0 0 0 0 0 0 0 54.3624 8.72483 0 4.69799 6.04027 3.3557 2.01342 0.671141 3.3557 30.8725 g 0 0 0 0 0 0 0 15.4362 8.72483 4.69799 4.02685 4.02685 2.68456 19.4631 15.4362 49.6644 57.047 t 0 0 0 0 0 0 0 2.01342 77.8523 14.094 86.5772 4.02685 22.8188 1.34228 24.1611 7.38255 4.69799

M05082_2.00_rc_shift5 (HOXC11_rc)
; positions_6nt_m4 versus M05082_2.00_rc (HOXC11_rc); m=90/257; ncol2=11; w=-1; offset=-1; strand=R; shift=5; score=0.638569; -----ggymrTwAAah- ; cor=; Ncor= a 0 0 0 0 0 23.2558 9.93915 1.34228 41.8103 61.3924 0 54.1899 88.4498 80.8333 45.6829 32.5342 0 c 0 0 0 0 0 19.7674 22.1095 53.3557 47.2701 8.86076 1.02041 8.37989 0 13.3333 19.1523 26.0274 0 g 0 0 0 0 0 33.1395 59.0264 1.00671 6.89655 27.6371 0 2.7933 0 1.66667 17.1115 16.0959 0 t 0 0 0 0 0 23.8372 8.92495 44.2953 4.02299 2.1097 98.9796 34.6369 11.5502 4.16667 18.0534 25.3425 0

M00473_2.00_rc_shift6 (M00473_2.00_rc)
; positions_6nt_m4 versus M00473_2.00_rc; m=91/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.637181; ------cyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 19.4856 13.1413 30.013 50.6222 8.03624 59.2412 77.9309 70.809 37.5845 0 0 c 0 0 0 0 0 0 42.0844 35.0145 38.154 3.47082 9.06083 5.82184 3.72782 10.5908 21.9023 0 0 g 0 0 0 0 0 0 24.2806 8.21337 6.7641 38.2594 1.94247 7.78047 5.96448 6.17177 16.0642 0 0 t 0 0 0 0 0 0 14.1495 43.6308 25.0689 7.64758 80.9605 27.1565 12.3768 12.4284 24.449 0 0

M01655_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01655_2.00 (ARID3B,ARID3C); m=92/257; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.63598; -------ydATyAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 19.6725 40.3679 99.9299 0.0504388 16.5827 73.2498 66.103 51.0165 33.5782 0 c 0 0 0 0 0 0 0 27.0916 8.15014 0.00950887 0.124059 37.6511 5.33279 9.31116 9.89618 22.7343 0 g 0 0 0 0 0 0 0 20.4754 25.9984 0.0187693 0.0417108 3.31468 11.9876 11.3727 17.4991 14.496 0 t 0 0 0 0 0 0 0 32.7605 25.4836 0.0417719 99.7838 42.4515 9.4298 13.2132 21.5882 29.1915 0

M06223_2.00_rc_shift7 (M06223_2.00_rc)
; positions_6nt_m4 versus M06223_2.00_rc; m=93/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.635232; -------yAATwAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.63158 71.0526 100 0 63.1579 89.4737 76.3158 42.1053 0 0 c 0 0 0 0 0 0 0 39.4737 18.4211 0 0 5.26316 0 7.89474 10.5263 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 7.89474 15.7895 0 0 t 0 0 0 0 0 0 0 57.8947 10.5263 0 100 31.5789 10.5263 7.89474 31.5789 0 0

M00367_2.00_rc_shift5 (NR1H2,NR1H4_rc)
; positions_6nt_m4 versus M00367_2.00_rc (NR1H2,NR1H4_rc); m=94/257; ncol2=13; w=-1; offset=-1; strand=R; shift=5; score=0.635144; -----tkwtATAAtAws ; cor=; Ncor= a 0 0 0 0 0 22.5715 20.2323 39.2195 24.5374 73.073 0.0270709 99.9188 80.4586 21.9158 76.0942 25.5241 19.8486 c 0 0 0 0 0 22.5715 20.2323 10.4805 16.4668 2.43408 9.94694 0.0270709 10.1305 2.4556 14.3162 14.5466 30.8261 g 0 0 0 0 0 22.5715 29.9464 20.1946 5.17847 12.5375 0.0270709 0.0270709 0.0270709 13.4331 4.7948 14.5466 29.4767 t 0 0 0 0 0 32.2856 29.5891 30.1053 53.8173 11.9555 89.9989 0.0270709 9.38387 62.1955 4.7948 45.3828 19.8486

M03740_2.00_shift4 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI2,FOXI3,FOXS1)
; positions_6nt_m4 versus M03740_2.00 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI2,FOXI3,FOXS1); m=95/257; ncol2=13; w=-2; offset=-2; strand=D; shift=4; score=0.631729; ----wWAcAATAACAww ; cor=; Ncor= a 0 0 0 0 50.9564 72.2365 96.0684 16.0311 96.1094 96.6258 11.8504 96.4807 95.8023 1.54342 84.5272 42.2914 33.3852 c 0 0 0 0 14.7687 1.01221 0.512821 59.3218 1.13296 1.69783 8.98876 1.69528 0.958875 76.2551 1.61685 14.0823 13.4564 g 0 0 0 0 3.20285 0.449871 2.09402 18.4721 2.60795 0.580271 0.22823 0.922747 2.23737 0.932836 4.39932 10.723 12.5445 t 0 0 0 0 31.0721 26.3014 1.32479 6.17496 0.149637 1.09607 78.9326 0.901288 1.00149 21.2687 9.45666 32.9032 40.6139

M08325_2.00_rc_shift7 (ZNF22_rc)
; positions_6nt_m4 versus M08325_2.00_rc (ZNF22_rc); m=96/257; ncol2=9; w=0; offset=1; strand=R; shift=7; score=0.629808; -------AAAAAAAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 99.6073 0 c 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0 g 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0 t 0 0 0 0 0 0 0 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0.13089 0

M00410_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00410_2.00_rc (HOXC5,HOXC6_rc); m=97/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.625562; -----rgymrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 27.57 24.4406 15.758 36.7506 59.6861 9.81883 52.2927 74.3375 65.6214 42.7731 0 0 c 0 0 0 0 0 18.6665 21.0362 36.8681 38.6348 8.92716 8.2838 5.2955 6.16332 10.7392 16.8763 0 0 g 0 0 0 0 0 33.3391 41.1098 9.00111 10.9589 26.8187 7.8798 7.00663 8.92285 9.43005 16.8763 0 0 t 0 0 0 0 0 20.4244 13.4133 38.3728 13.6557 4.56811 74.0176 35.4051 10.5763 14.2094 23.4744 0 0

M08306_2.00_rc_shift7 (ZNF384_rc)
; positions_6nt_m4 versus M08306_2.00_rc (ZNF384_rc); m=98/257; ncol2=9; w=0; offset=1; strand=R; shift=7; score=0.625506; -------AAAAAAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 99.7807 24.0497 0 c 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0 g 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 75.8041 0 t 0 0 0 0 0 0 0 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0.0730994 0

M01662_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01662_2.00 (ARID3B,ARID3C); m=99/257; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.624991; -------kwATyaaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.246 32.2758 84.0479 3.76409 23.864 56.6849 48.6881 38.9881 30.1875 0 c 0 0 0 0 0 0 0 24.0047 15.7103 2.11994 10.9737 31.8925 10.9957 16.3697 14.6327 23.7463 0 g 0 0 0 0 0 0 0 25.7453 23.6726 10.6057 7.35592 11.0494 16.2405 17.7331 23.8851 20.8515 0 t 0 0 0 0 0 0 0 26.004 28.3413 3.22647 77.9062 33.1941 16.0789 17.209 22.4942 25.2147 0

M03037_2.00_shift5 (FOXC2,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXS1)
; positions_6nt_m4 versus M03037_2.00 (FOXC2,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXS1); m=100/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.624499; -----rTAAAyAAACA- ; cor=; Ncor= a 0 0 0 0 0 36.303 15.1987 88.5964 92.7934 92.6866 0.638658 97.9631 95.1148 89.6938 6.54029 85.9496 0 c 0 0 0 0 0 8.81527 11.1911 9.52021 3.39093 0.337984 37.3115 1.3985 1.60874 1.35699 71.4389 3.93438 0 g 0 0 0 0 0 44.1076 1.16351 1.01045 1.85745 6.4145 0.184672 0.349624 0.885544 2.76966 3.37546 4.93465 0 t 0 0 0 0 0 10.7742 72.4467 0.872972 1.95824 0.560909 61.8652 0.28882 2.39097 6.17954 18.6454 5.18138 0

M06251_2.00_rc_shift6 (DBX1,DBX2,HLX_rc)
; positions_6nt_m4 versus M06251_2.00_rc (DBX1,DBX2,HLX_rc); m=101/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.623985; ------byAATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 14.0952 5.33333 72 85.5238 1.71429 63.2381 80.5714 49.9048 0 0 0 c 0 0 0 0 0 0 27.8095 33.3333 18.8571 10.0952 0 3.80952 5.90476 13.5238 0 0 0 g 0 0 0 0 0 0 26.6667 1.90476 7.42857 0 3.04762 0.380952 2.47619 5.33333 0 0 0 t 0 0 0 0 0 0 31.4286 59.4286 1.71429 4.38095 95.2381 32.5714 11.0476 31.2381 0 0 0

M09674_2.00_rc_shift5 (M09674_2.00_rc)
; positions_6nt_m4 versus M09674_2.00_rc; m=102/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.622499; -----rrymATAAAa-- ; cor=; Ncor= a 0 0 0 0 0 37.2373 31.0453 0.581395 33.4908 97.093 11.5587 77.201 86.4085 87.1199 48.4407 0 0 c 0 0 0 0 0 9.75194 24.799 44.3691 52.4448 0.968992 6.87239 1.74419 3.53309 2.32558 8.5486 0 0 g 0 0 0 0 0 44.034 40.1401 0.914729 0.968992 0.968992 0.968992 6.0972 0.968992 2.32558 20.6828 0 0 t 0 0 0 0 0 8.97674 4.0155 54.1348 13.0954 0.968992 80.5999 14.9577 9.08945 8.22898 22.328 0 0

M03035_2.00_shift4 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1)
; positions_6nt_m4 versus M03035_2.00 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1); m=103/257; ncol2=13; w=-2; offset=-2; strand=D; shift=4; score=0.621757; ----wrTAAAyAAAyAa ; cor=; Ncor= a 0 0 0 0 27.2199 29.819 12.9027 76.6376 83.3549 90.965 0.37676 98.4061 93.914 84.9468 3.89792 82.8822 43.4024 c 0 0 0 0 14.2188 4.64639 5.03679 14.0223 5.69506 0.27972 41.9988 0.708383 1.11669 1.29245 65.9675 5.55962 17.8504 g 0 0 0 0 14.3874 52.1739 2.42028 1.11596 3.83122 7.4965 0.0198295 0.295159 1.39587 4.23213 3.93288 5.75469 15.4544 t 0 0 0 0 44.1738 13.3607 79.6402 8.22416 7.11882 1.25874 57.6046 0.590319 3.57342 9.52864 26.2017 5.80346 23.2928

M01557_2.00_shift6 (M01557_2.00)
; positions_6nt_m4 versus M01557_2.00; m=104/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.619422; ------TTAATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0.961538 0.961538 97.1154 97.1154 0.961538 97.1154 97.1154 97.1154 0 0 0 c 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0 0 0 g 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0 0 0 t 0 0 0 0 0 0 97.1154 97.1154 0.961538 0.961538 97.1154 0.961538 0.961538 0.961538 0 0 0

M00509_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m4 versus M00509_2.00_rc (HOXC6_rc); m=105/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.618044; ------gymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 24.7161 19.3063 31.7611 44.8338 17.2335 41.2167 51.0367 45.4306 0 0 0 c 0 0 0 0 0 0 24.2267 30.2783 31.7611 14.4828 17.9368 14.4233 13.0991 17.222 0 0 0 g 0 0 0 0 0 0 32.3772 16.9528 17.783 25.6095 16.5577 15.3152 16.3225 14.1002 0 0 0 t 0 0 0 0 0 0 18.68 33.4627 18.6948 15.0739 48.272 29.0449 19.5416 23.2472 0 0 0

M00248_2.00_rc_shift6 (WT1_rc)
; positions_6nt_m4 versus M00248_2.00_rc (WT1_rc); m=106/257; ncol2=13; w=0; offset=0; strand=R; shift=6; score=0.612976; ------tamATATAAtA ; cor=; Ncor= a 0 0 0 0 0 0 22.5797 40.0671 25.0544 85.1835 12.1696 89.532 20.5397 99.8774 72.5594 14.775 70.0218 c 0 0 0 0 0 0 22.5797 19.9776 44.8494 4.93882 2.52855 0.0408538 9.68195 0.0408538 2.46114 5.06322 9.99275 g 0 0 0 0 0 0 22.5797 19.9776 15.0481 4.93882 2.52855 10.3863 0.0408538 0.0408538 2.46114 14.9523 9.99275 t 0 0 0 0 0 0 32.2609 19.9776 15.0481 4.93882 82.7733 0.0408538 69.7375 0.0408538 22.5183 65.2095 9.99275

M03735_2.00_shift4 (FOXB2)
; positions_6nt_m4 versus M03735_2.00 (FOXB2); m=107/257; ncol2=13; w=-2; offset=-2; strand=D; shift=4; score=0.608677; ----wwAsAATAAyATT ; cor=; Ncor= a 0 0 0 0 48.8673 63.2653 98.4127 10.3718 91.9881 97.4843 6.12245 99.359 96.5732 0 85.3994 18.7097 14.2395 c 0 0 0 0 20.0647 0.816327 0 60.6654 1.48368 0.628931 3.49854 0 0 49.0323 0.550964 6.12903 12.2977 g 0 0 0 0 1.94175 0 1.5873 26.8102 4.74777 1.88679 0 0.641026 1.55763 0 7.7135 6.45161 2.26537 t 0 0 0 0 29.1262 35.9184 0 2.15264 1.78042 0 90.379 0 1.86916 50.9677 6.33609 68.7097 71.1974

M05899_2.00_shift8 (ARID3B,ARID3C)
; positions_6nt_m4 versus M05899_2.00 (ARID3B,ARID3C); m=108/257; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.606487; --------AATyAAAm- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80.9524 100 0 4.7619 95.2381 85.7143 90.4762 45 0 c 0 0 0 0 0 0 0 0 0 0 0 61.9048 0 9.52381 9.52381 40 0 g 0 0 0 0 0 0 0 0 4.7619 0 0 0 4.7619 4.7619 0 5 0 t 0 0 0 0 0 0 0 0 14.2857 0 100 33.3333 0 0 0 10 0

M02183_2.00_shift6 (M02183_2.00)
; positions_6nt_m4 versus M02183_2.00; m=109/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.605303; ------GYAATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 9.14855 0.0766871 92.1012 99.7699 0.0766871 53.7577 99.7508 88.6062 0 0 0 c 0 0 0 0 0 0 0.0905797 30.7515 7.7454 0.0766871 0.0766871 0.0766871 0.0830565 11.1726 0 0 0 g 0 0 0 0 0 0 90.6703 0.0766871 0.0766871 0.0766871 0.0766871 0.0766871 0.0830565 0.110619 0 0 0 t 0 0 0 0 0 0 0.0905797 69.0951 0.0766871 0.0766871 99.7699 46.089 0.0830565 0.110619 0 0 0

M03781_2.00_rc_shift4 (M03781_2.00_rc)
; positions_6nt_m4 versus M03781_2.00_rc; m=110/257; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.60405; ----rgGyMATAAAay- ; cor=; Ncor= a 0 0 0 0 31.0653 23.6664 20.877 0.316355 25.9129 92.3276 0 99.6273 99.405 99.5623 53.0699 23.0676 0 c 0 0 0 0 15.0533 11.0271 1.94934 37.5243 72.1701 0 0.0280505 0 0 0.0884626 20.5144 30.3858 0 g 0 0 0 0 38.0845 44.5416 77.0511 0.0957771 0.590618 7.67238 0 0.0372717 0 0.0372474 6.85995 19.6119 0 t 0 0 0 0 15.7969 20.7649 0.122509 62.0636 1.32636 0 99.9719 0.335445 0.595017 0.311947 19.5558 26.9348 0

M03059_2.00_shift5 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m4 versus M03059_2.00 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=111/257; ncol2=11; w=-1; offset=-1; strand=D; shift=5; score=0.60394; -----rTAAAyAAACA- ; cor=; Ncor= a 0 0 0 0 0 30.2211 9.81333 88.0629 96.2794 98.0568 0.198282 99.5409 99.8467 94.9604 2.60223 94.5196 0 c 0 0 0 0 0 2.49795 8.8 10.0786 2.2779 0.0747384 41.5069 0.153022 0 1.79986 82.8377 2.13523 0 g 0 0 0 0 0 65.1925 1.6 0.500357 0.455581 1.86846 0.0660939 0.0765111 0 1.87185 0.929368 2.84698 0 t 0 0 0 0 0 2.08845 79.7867 1.35811 0.987092 0 58.2287 0.229533 0.153257 1.36789 13.6307 0.498221 0

M09682_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M09682_2.00_rc (HOXC5,HOXC6_rc); m=112/257; ncol2=9; w=0; offset=1; strand=R; shift=7; score=0.602842; -------TmATTAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.657895 61.8421 93.8596 0.657895 21.4912 87.5 70.3947 64.4737 67.7632 0 c 0 0 0 0 0 0 0 14.2544 36.8421 4.82456 0.657895 8.99123 0 8.99123 14.2544 15.1316 0 g 0 0 0 0 0 0 0 0.657895 0.657895 0.657895 0.657895 0.657895 0 0.657895 20.614 9.86842 0 t 0 0 0 0 0 0 0 84.4298 0.657895 0.657895 98.0263 68.8596 12.5 19.9561 0.657895 7.23684 0

M06211_2.00_shift7 (HOXC5,HOXC6)
; positions_6nt_m4 versus M06211_2.00 (HOXC5,HOXC6); m=113/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.601115; -------yCATAAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 14.2857 85.7143 0 100 100 85.7143 71.4286 0 0 c 0 0 0 0 0 0 0 28.5714 71.4286 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 14.2857 14.2857 0 0 0 0 14.2857 0 0 t 0 0 0 0 0 0 0 57.1429 0 0 100 0 0 14.2857 14.2857 0 0

M00389_2.00_rc_shift5 (M00389_2.00_rc)
; positions_6nt_m4 versus M00389_2.00_rc; m=114/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.600854; -----scyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 22.897 19.1994 13.2557 32.4192 55.2686 4.6339 62.2496 82.2278 75.8821 40.2869 0 0 c 0 0 0 0 0 25.3051 41.8829 35.6741 36.9199 2.36838 5.89084 3.97948 1.08274 8.66403 20.0059 0 0 g 0 0 0 0 0 27.9665 24.4072 7.05986 5.41272 35.595 0.0504586 6.627 4.39072 4.21724 15.2721 0 0 t 0 0 0 0 0 23.8314 14.5106 44.0104 25.2481 6.768 89.4248 27.1439 12.2987 11.2366 24.4352 0 0

M01105_2.00_shift6 (M01105_2.00)
; positions_6nt_m4 versus M01105_2.00; m=115/257; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.600439; ------waarwwwww-- ; cor=; Ncor= a 0 0 0 0 0 0 37.434 33.1918 36.7239 39.8201 30.6146 57.2249 60.2371 50.597 33.1768 0 0 c 0 0 0 0 0 0 17.3324 23.625 21.1878 10.6374 17.3133 0.213737 9.28396 4.82539 9.60085 0 0 g 0 0 0 0 0 0 18.5892 21.5916 19.3642 25.3904 15.0515 14.9841 4.47402 5.95298 10.6106 0 0 t 0 0 0 0 0 0 26.6444 21.5916 22.7241 24.1521 37.0206 27.5772 26.005 38.6247 46.6117 0 0

M08855_2.00_rc_shift5 (PRDM6_rc)
; positions_6nt_m4 versus M08855_2.00_rc (PRDM6_rc); m=116/257; ncol2=13; w=-1; offset=-1; strand=R; shift=5; score=0.599659; -----arrarGAAAAaa ; cor=; Ncor= a 0 0 0 0 0 46.4 53 43.4 61.6 47.2 0.2 97.8 98.4 93.8 76 60.4 49.2 c 0 0 0 0 0 16.6 7 19.6 3.8 1 4.6 1.6 0.4 0.8 13.2 23.4 19.2 g 0 0 0 0 0 24.6 26.8 33 20.2 45.2 94.2 0 0 0.8 6.8 11.2 12.6 t 0 0 0 0 0 12.4 13.2 4 14.4 6.6 1 0.6 1.2 4.6 4 5 19

M02092_2.00_rc_shift5 (HOXB13_rc)
; positions_6nt_m4 versus M02092_2.00_rc (HOXB13_rc); m=117/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.598688; -----scyhrTwAAa-- ; cor=; Ncor= a 0 0 0 0 0 24.2336 19.7551 15.1577 32.7507 57.3867 5.11546 55.7684 72.7356 69.2102 37.1868 0 0 c 0 0 0 0 0 26.5157 40.9935 39.1933 33.4123 2.38646 10.7217 6.89784 6.15233 11.2138 21.6706 0 0 g 0 0 0 0 0 27.3233 24.6164 7.99252 6.48132 34.1176 0.0408548 8.50971 8.47254 7.66871 16.7091 0 0 t 0 0 0 0 0 21.9274 14.635 37.6565 27.3557 6.1093 84.122 28.824 12.6395 11.9073 24.4335 0 0

M00293_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m4 versus M00293_2.00_rc (HOXD13_rc); m=118/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score= 0.5979; -----gsyhrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 23.8214 22.3966 15.1078 31.6447 54.485 3.93707 55.2895 74.4533 65.3982 35.8579 0 0 c 0 0 0 0 0 24.7936 35.8344 36.061 32.9361 4.51735 9.30393 6.31282 3.12731 11.9472 21.3183 0 0 g 0 0 0 0 0 26.5913 25.5058 10.5404 8.45341 34.0533 1.09465 10.9417 6.29762 7.61786 17.8065 0 0 t 0 0 0 0 0 24.7936 16.2632 38.2909 26.9658 6.94433 85.6643 27.456 16.1218 15.0367 25.0172 0 0

M06225_2.00_rc_shift7 (M06225_2.00_rc)
; positions_6nt_m4 versus M06225_2.00_rc; m=119/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.597041; -------ymATwAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.04225 56.4085 89.2254 0 50.7746 85.8451 73.3099 36.4789 0 0 c 0 0 0 0 0 0 0 39.3662 27.9577 2.32394 0 3.59155 0.422535 8.16901 21.831 0 0 g 0 0 0 0 0 0 0 1.5493 1.19718 8.4507 0 0.704225 1.05634 9.50704 17.3239 0 0 t 0 0 0 0 0 0 0 57.0423 14.4366 0 100 44.9296 12.6761 9.01408 24.3662 0 0

M09161_2.00_rc_shift5 (HOXC5,HOXC6,HOXC9_rc)
; positions_6nt_m4 versus M09161_2.00_rc (HOXC5,HOXC6,HOXC9_rc); m=120/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.593594; -----dGCmATaAAw-- ; cor=; Ncor= a 0 0 0 0 0 29.6 7 2.8 49 94.6 0.4 61.8 96.4 88.6 51 0 0 c 0 0 0 0 0 1.6 13.4 80.2 45.4 1.8 1.2 3.2 1.6 4.6 7.4 0 0 g 0 0 0 0 0 40 77.4 1.4 0.4 2.4 2.4 12.6 1.2 2.8 15.6 0 0 t 0 0 0 0 0 28.8 2.2 15.6 5.2 1.2 96 22.4 0.8 4 26 0 0

M00297_2.00_rc_shift5 (HOXD13_rc)
; positions_6nt_m4 versus M00297_2.00_rc (HOXD13_rc); m=121/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.592977; -----gsgtaywAaa-- ; cor=; Ncor= a 0 0 0 0 0 24.9574 21.532 22.9275 20.2625 63.4014 4.89403 54.5821 79.2274 64.0553 36.5909 0 0 c 0 0 0 0 0 23.504 34.451 16.1567 17.7924 17.107 28.1632 8.58233 6.43867 12.6765 22.1935 0 0 g 0 0 0 0 0 30.483 26.5635 37.0526 15.9391 13.3229 2.99821 7.76562 3.39506 7.31368 16.4414 0 0 t 0 0 0 0 0 21.0557 17.4535 23.8632 46.006 6.16869 63.9446 29.07 10.9389 15.9546 24.7742 0 0

M10718_2.00_rc_shift4 (NKX6-1_rc)
; positions_6nt_m4 versus M10718_2.00_rc (NKX6-1_rc); m=122/257; ncol2=13; w=-2; offset=-2; strand=R; shift=4; score=0.592735; ----AwcCAATTAAAwa ; cor=; Ncor= a 0 0 0 0 76.4706 64.7059 11.7647 11.7647 70.5882 100 0 0 100 94.1176 76.4706 58.8235 52.9412 c 0 0 0 0 5.88235 0 58.8235 82.3529 23.5294 0 0 0 0 5.88235 0 0 5.88235 g 0 0 0 0 5.88235 5.88235 11.7647 0 0 0 0 0 0 0 17.6471 5.88235 23.5294 t 0 0 0 0 11.7647 29.4118 17.6471 5.88235 5.88235 0 100 100 0 0 5.88235 35.2941 17.6471

M00554_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00554_2.00_rc (HOXC5,HOXC6_rc); m=123/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.592309; -----rgymrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 27.2318 23.6474 15.7584 34.0063 58.6239 5.69668 51.0046 76.869 64.1576 37.1455 0 0 c 0 0 0 0 0 20.1738 23.1791 35.4234 40.7129 9.69046 6.04895 7.04217 5.65252 13.6173 19.9822 0 0 g 0 0 0 0 0 33.5953 40.5791 8.47713 8.72809 26.8735 0.0298935 3.7883 5.27038 7.32536 17.7226 0 0 t 0 0 0 0 0 18.999 12.5944 40.3411 16.5526 4.81214 88.2245 38.1649 12.2081 14.8997 25.1496 0 0

M00505_2.00_rc_shift5 (M00505_2.00_rc)
; positions_6nt_m4 versus M00505_2.00_rc; m=124/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.591875; -----ssyhrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 23.771 20.9917 14.7959 31.594 51.668 5.55834 56.5888 78.2973 66.6261 37.3403 0 0 c 0 0 0 0 0 25.4946 38.6337 37.1273 34.2254 3.6871 10.0272 5.67353 1.52274 11.8118 20.9068 0 0 g 0 0 0 0 0 27.8955 25.1316 9.4343 7.79099 37.1454 0.0370792 9.35407 5.58739 7.83888 17.4628 0 0 t 0 0 0 0 0 22.8389 15.2431 38.6425 26.3896 7.49952 84.3774 28.3836 14.5926 13.7233 24.2902 0 0

M09158_2.00_rc_shift3 (EVX2,HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc)
; positions_6nt_m4 versus M09158_2.00_rc (EVX2,HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc); m=125/257; ncol2=13; w=-3; offset=-3; strand=R; shift=3; score=0.591286; ---rrrGymATAAAam- ; cor=; Ncor= a 0 0 0 41.8 36.8 38.2 11.2 0.8 45.2 93.8 0.2 92.2 97.8 96.4 49.4 29.8 0 c 0 0 0 19 19.6 4.8 10.6 60.6 49.6 0 0.4 2.8 0 1.4 20.8 36.2 0 g 0 0 0 25 30.8 41.4 73.6 0 0.6 5.8 1 2.2 0.8 1 18.2 17.6 0 t 0 0 0 14.2 12.8 15.6 4.6 38.6 4.6 0.4 98.4 2.8 1.4 1.2 11.6 16.4 0

M08131_2.00_rc_shift4 (CDX2_rc)
; positions_6nt_m4 versus M08131_2.00_rc (CDX2_rc); m=126/257; ncol2=11; w=-2; offset=-2; strand=R; shift=4; score=0.588053; ----rdGymATAAAa-- ; cor=; Ncor= a 0 0 0 0 38.3845 41.6406 19.2862 0 43.6443 100 0 100 100 100 63.4314 0 0 c 0 0 0 0 19.975 0.500939 8.51597 65.623 52.0977 0 0 0 0 0 9.39261 0 0 g 0 0 0 0 30.0564 31.4339 72.1979 0 0 0 0 0 0 0 19.5992 0 0 t 0 0 0 0 11.5842 26.4245 0 34.377 4.25798 0 100 0 0 0 7.57671 0 0

M00475_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00475_2.00_rc (HOXC5,HOXC6_rc); m=127/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.586241; ------gymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 23.7811 18.1949 32.6787 50.4181 15.9948 41.1281 52.2166 45.5358 0 0 0 c 0 0 0 0 0 0 23.0782 35.5571 34.6994 13.2018 13.227 14.5369 15.4159 18.5135 0 0 0 g 0 0 0 0 0 0 37.6709 13.7514 16.0663 24.7878 12.0886 10.6621 14.8114 16.0948 0 0 0 t 0 0 0 0 0 0 15.4698 32.4967 16.5556 11.5924 58.6896 33.6729 17.5561 19.8559 0 0 0

M00285_2.00_rc_shift4 (NKX1-1,NKX1-2,OTP,SEBOX,VSX2_rc)
; positions_6nt_m4 versus M00285_2.00_rc (NKX1-1,NKX1-2,OTP,SEBOX,VSX2_rc); m=128/257; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.584271; ----ttwwAATAwAtw- ; cor=; Ncor= a 0 0 0 0 22.5976 22.5976 34.6139 47.449 89.6456 69.9283 0.0323536 79.6396 32.3893 72.2075 19.8268 27.7576 0 c 0 0 0 0 22.5976 22.5976 15.109 7.53215 0.0323536 0.0323536 19.627 0.0323536 2.43477 2.43477 20.1808 17.5002 0 g 0 0 0 0 22.5976 22.5976 24.7186 17.346 0.0323536 10.2897 0.0323536 0.0323536 2.43477 12.3382 9.9234 17.5002 0 t 0 0 0 0 32.2072 32.2072 25.5585 27.6729 10.2897 19.7496 80.3083 20.2957 62.7412 13.0196 50.069 37.242 0

M01551_2.00_shift6 (OTP,SEBOX)
; positions_6nt_m4 versus M01551_2.00 (OTP,SEBOX); m=129/257; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.581583; ------stAATwwaw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.3118 5.12295 74.3002 88.6081 0.00961698 45.7287 36.1372 52.2147 32.9757 0 0 c 0 0 0 0 0 0 26.0137 23.6587 12.783 4.41154 0.874393 14.1927 13.2941 15.262 19.6048 0 0 g 0 0 0 0 0 0 34.4195 3.61008 2.55516 2.10481 0.051087 4.10714 4.16753 10.6479 12.7531 0 0 t 0 0 0 0 0 0 24.255 67.6083 10.3617 4.87551 99.0649 35.9715 46.4011 21.8754 34.6664 0 0

M09398_2.00_rc_shift6 (SOX1,SRY_rc)
; positions_6nt_m4 versus M09398_2.00_rc (SOX1,SRY_rc); m=130/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.57988; ------wwAACAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 39.2907 57.4864 73.3199 90.9781 1.65708 87.0204 87.6188 55.217 46.9304 0 0 c 0 0 0 0 0 0 2.6237 6.98093 3.40621 3.49827 91.0094 3.02236 4.12708 4.44928 14.0995 0 0 g 0 0 0 0 0 0 24.1953 9.46654 4.0194 0 7.33355 0.460299 0.460299 3.66678 28.5373 0 0 t 0 0 0 0 0 0 33.8904 26.0661 19.2545 5.52359 0 9.49696 7.79385 36.6669 10.4328 0 0

M09408_2.00_rc_shift6 (SOX1_rc)
; positions_6nt_m4 versus M09408_2.00_rc (SOX1_rc); m=131/257; ncol2=9; w=0; offset=0; strand=R; shift=6; score=0.57988; ------wwAACAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 39.2907 57.4864 73.3199 90.9781 1.65708 87.0204 87.6188 55.217 46.9304 0 0 c 0 0 0 0 0 0 2.6237 6.98093 3.40621 3.49827 91.0094 3.02236 4.12708 4.44928 14.0995 0 0 g 0 0 0 0 0 0 24.1953 9.46654 4.0194 0 7.33355 0.460299 0.460299 3.66678 28.5373 0 0 t 0 0 0 0 0 0 33.8904 26.0661 19.2545 5.52359 0 9.49696 7.79385 36.6669 10.4328 0 0

M00750_2.00_shift7 (M00750_2.00)
; positions_6nt_m4 versus M00750_2.00; m=132/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.579499; -------AAAwAaAt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 75 80 73.3333 26.6667 73.3333 66.6667 69.2308 16.6667 0 0 c 0 0 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 0 g 0 0 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 0 t 0 0 0 0 0 0 0 8.33333 6.66667 13.3333 60 13.3333 20 15.3846 66.6667 0 0

M01678_2.00_shift6 (M01678_2.00)
; positions_6nt_m4 versus M01678_2.00; m=133/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.574942; ------aaarwAww--- ; cor=; Ncor= a 0 0 0 0 0 0 42.1032 36.1549 39.9952 40.7012 28.7986 78.0909 56.2556 41.7051 0 0 0 c 0 0 0 0 0 0 21.3302 21.0692 12.9198 8.13567 14.301 0.0177366 0.0620326 9.30567 0 0 0 g 0 0 0 0 0 0 21.9798 21.281 23.3071 26.4765 13.0701 13.9834 17.6353 11.2529 0 0 0 t 0 0 0 0 0 0 14.5869 21.4949 23.7779 24.6866 43.8304 7.90798 26.0471 37.7363 0 0 0

M00508_2.00_rc_shift5 (M00508_2.00_rc)
; positions_6nt_m4 versus M00508_2.00_rc; m=134/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.574699; -----rrymrTwAaw-- ; cor=; Ncor= a 0 0 0 0 0 25.6067 26.3052 13.8894 32.0918 43.6555 11.8057 51.3416 70.4721 58.598 35.7531 0 0 c 0 0 0 0 0 22.0399 23.5651 31.5358 37.2853 10.5522 11.0075 12.5347 6.32947 13.7454 21.0444 0 0 g 0 0 0 0 0 30.9649 37.704 10.7094 15.3114 38.719 3.59154 7.0887 6.99515 10.1828 17.7545 0 0 t 0 0 0 0 0 21.3885 12.4257 43.8653 15.3114 7.07332 73.5952 29.035 16.2033 17.4738 25.448 0 0

M09580_2.00_rc_shift5 (M09580_2.00_rc)
; positions_6nt_m4 versus M09580_2.00_rc; m=135/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.569537; -----ggyCATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 23.2 24.5 2.2 20.9 72.5 0.1 98 94.7 95.4 44.6 0 0 c 0 0 0 0 0 13.4 14.8 53.9 75.6 2.1 0.1 0.1 0.1 4.2 12.9 0 0 g 0 0 0 0 0 47.4 60.6 2.1 2.8 24.5 0.2 1.2 0.4 0.3 12.1 0 0 t 0 0 0 0 0 16 0.1 41.8 0.7 0.9 99.6 0.7 4.8 0.1 30.4 0 0

M00296_2.00_shift7 (HOXD13)
; positions_6nt_m4 versus M00296_2.00 (HOXD13); m=136/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.569104; -------GkATAAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0048 8.66656 90.9539 0.00694252 81.2344 96.5079 98.4626 48.8783 0 0 c 0 0 0 0 0 0 0 3.0088 10.2409 0.00694252 0.00694252 0.00694252 0.00694252 0.00757346 14.4491 0 0 g 0 0 0 0 0 0 0 75.9796 25.1968 2.78395 0.00694252 0.00694252 0.00694252 0.00757346 7.78543 0 0 t 0 0 0 0 0 0 0 8.0068 55.8958 6.25521 99.9792 18.7517 3.4782 1.52227 28.8872 0 0

M00538_2.00_rc_shift5 (M00538_2.00_rc)
; positions_6nt_m4 versus M00538_2.00_rc; m=137/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.569001; -----rrymrtwaaw-- ; cor=; Ncor= a 0 0 0 0 0 25.5374 27.194 14.0484 32.7127 42.7202 13.6804 49.0305 67.305 57.0495 34.4765 0 0 c 0 0 0 0 0 21.9803 23.8789 28.0085 38.0067 12.1177 11.2006 12.7107 8.6645 12.7295 21.1212 0 0 g 0 0 0 0 0 29.375 36.708 10.832 15.2986 37.5124 7.35932 8.52023 7.76196 10.8473 17.8192 0 0 t 0 0 0 0 0 23.1072 12.219 47.1111 13.9819 7.64973 67.7597 29.7385 16.2686 19.3737 26.5831 0 0

M03153_2.00_rc_shift6 (LMX1B,OTP,SEBOX_rc)
; positions_6nt_m4 versus M03153_2.00_rc (LMX1B,OTP,SEBOX_rc); m=138/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.568535; ------tyAATtAa--- ; cor=; Ncor= a 0 0 0 0 0 0 21.122 11.1735 79.1088 93.5021 7.02304 21.4912 87.1811 51.3171 0 0 0 c 0 0 0 0 0 0 23.5366 29.4216 5.90278 1.36799 0.24603 6.53178 1.9983 16.1463 0 0 0 g 0 0 0 0 0 0 23.9512 3.49563 6.34645 0.980392 1.00649 6.6433 0.42517 19.7317 0 0 0 t 0 0 0 0 0 0 31.3902 55.9093 8.64198 4.14957 91.7244 65.3338 10.3954 12.8049 0 0 0

M03782_2.00_rc_shift4 (M03782_2.00_rc)
; positions_6nt_m4 versus M03782_2.00_rc; m=139/257; ncol2=12; w=-2; offset=-2; strand=R; shift=4; score=0.568167; ----vgGYMATAAAms- ; cor=; Ncor= a 0 0 0 0 31.2432 23.4868 10.1975 0 29.236 93.9394 0 96.5023 95.4341 94.9742 32.5118 15.1197 0 c 0 0 0 0 25.8065 20.5147 12.8137 71.8677 69.4288 1.02145 0 0 0 2.37522 37.2236 41.0805 0 g 0 0 0 0 33.5629 32.2581 73.6519 0 0 5.03916 0 0.0349773 0 0.550775 10.9822 25.6345 0 t 0 0 0 0 9.38746 23.7405 3.33689 28.1323 1.33517 0 100 3.46275 4.56589 2.09983 19.2823 18.1653 0

M02196_2.00_rc_shift6 (M02196_2.00_rc)
; positions_6nt_m4 versus M02196_2.00_rc; m=140/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.566098; ------GYMATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 17.6557 0.0227066 69.964 86.2265 0.0195925 35.2861 97.8997 81.5195 0 0 0 c 0 0 0 0 0 0 5.90482 27.2707 25.9992 3.93809 0.0195925 0.0195925 0.0203915 5.28391 0 0 0 g 0 0 0 0 0 0 73.4724 2.29337 0.019984 9.81583 1.97884 0.0195925 0.0203915 2.6551 0 0 0 t 0 0 0 0 0 0 2.9671 70.4133 4.01679 0.0195925 97.982 64.6748 2.05954 10.5415 0 0 0

M00390_2.00_rc_shift5 (M00390_2.00_rc)
; positions_6nt_m4 versus M00390_2.00_rc; m=141/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.565994; -----rsymrTwAaa-- ; cor=; Ncor= a 0 0 0 0 0 26.117 24.7986 15.076 29.9041 49.3099 12.0043 52.691 76.2537 65.5904 38.9216 0 0 c 0 0 0 0 0 20.1375 25.5538 28.3068 47.3703 7.6762 7.06578 5.0251 3.36715 9.71266 20.1167 0 0 g 0 0 0 0 0 33.2012 38.5049 8.52585 8.31446 38.0205 2.25977 4.78002 7.12825 9.61601 16.6357 0 0 t 0 0 0 0 0 20.5443 11.1427 48.0914 14.4111 4.99344 78.6702 37.5039 13.2509 15.0809 24.3261 0 0

M04851_2.00_shift4 (FOXD2,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXS1)
; positions_6nt_m4 versus M04851_2.00 (FOXD2,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXS1); m=142/257; ncol2=14; w=-2; offset=-2; strand=D; shift=4; score=0.56335; ----wwACAATAAyAtt ; cor=; Ncor= a 0 0 0 0 45.8256 65.0355 93.2347 5.69813 83.2647 92.9488 0.729507 99.6508 98.0991 0 86.0259 24.8536 17.5719 c 0 0 0 0 20.9029 1.11275 0.172977 70.3349 1.93958 6.66794 5.89365 0.26705 0 62.585 0.0532009 9.24905 10.3354 g 0 0 0 0 4.72068 0.12066 4.92024 22.517 14.6756 0 0.249568 0.0821693 0.424671 0 12.9456 7.19945 7.06624 t 0 0 0 0 28.5508 33.7311 1.67211 1.44991 0.120151 0.383215 93.1273 0 1.47624 37.415 0.97535 58.6979 65.0264

M00493_2.00_rc_shift6 (M00493_2.00_rc)
; positions_6nt_m4 versus M00493_2.00_rc; m=143/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.562386; ------vymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 25.9281 18.0638 29.6012 38.4068 19.0588 44.3489 58.0384 50.5587 0 0 0 c 0 0 0 0 0 0 25.6701 27.4924 39.1662 13.7115 18.3115 13.7644 13.2117 15.5356 0 0 0 g 0 0 0 0 0 0 33.2923 14.6422 13.9826 32.7281 13.8395 12.4546 11.9545 11.8596 0 0 0 t 0 0 0 0 0 0 15.1095 39.8017 17.25 15.1536 48.7902 29.4321 16.7954 22.0461 0 0 0

M06203_2.00_shift3 (FOXP4)
; positions_6nt_m4 versus M06203_2.00 (FOXP4); m=144/257; ncol2=15; w=-3; offset=-3; strand=D; shift=3; score=0.559867; ---mmmmarAAAAAAws ; cor=; Ncor= a 0 0 0 33.7066 33.6656 32.2296 31.5673 42.1634 49.3377 96.0265 99.5585 100 99.117 100 98.6755 44.9227 12.792 c 0 0 0 27.8835 32.2259 26.4901 27.8146 21.0817 5.96026 0 0 0 0 0 0.993377 7.28477 37.3749 g 0 0 0 24.86 19.0476 20.9713 20.3091 15.011 31.7881 0.993377 0 0 0.883002 0 0.331126 3.31126 34.2603 t 0 0 0 13.5498 15.0609 20.3091 20.3091 21.7439 12.9139 2.98013 0.441501 0 0 0 0 44.4812 15.5729

M00470_2.00_shift5 (HOXC5,HOXC6)
; positions_6nt_m4 versus M00470_2.00 (HOXC5,HOXC6); m=145/257; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.559356; -----rgTAATwAAw-- ; cor=; Ncor= a 0 0 0 0 0 29.8013 14.2557 0.0191935 88.9524 99.9424 0.0191935 29.6867 99.9424 74.2546 30.0074 0 0 c 0 0 0 0 0 19.9213 4.87067 19.4455 11.0092 0.0191935 0.0191935 0.0191935 0.0191935 15.5497 20.1485 0 0 g 0 0 0 0 0 30.356 66.1229 0.0191935 0.0191935 0.0191935 0.0191935 9.89922 0.0191935 5.09788 20.1485 0 0 t 0 0 0 0 0 19.9213 14.7507 80.5162 0.0191935 0.0191935 99.9424 60.3949 0.0191935 5.09788 29.6955 0 0

M06244_2.00_shift5 (M06244_2.00)
; positions_6nt_m4 versus M06244_2.00; m=146/257; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.557269; -----twrawyrAAA-- ; cor=; Ncor= a 0 0 0 0 0 16.6667 66.6667 50 50 50 16.6667 33.3333 100 83.3333 83.3333 0 0 c 0 0 0 0 0 16.6667 0 16.6667 16.6667 0 50 16.6667 0 0 16.6667 0 0 g 0 0 0 0 0 16.6667 0 33.3333 16.6667 0 0 33.3333 0 0 0 0 0 t 0 0 0 0 0 50 33.3333 0 16.6667 50 33.3333 16.6667 0 16.6667 0 0 0

M06210_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06210_2.00_rc (HOXC5,HOXC6_rc); m=147/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.556808; ------kmmATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 13.5135 27.027 59.4595 97.2973 0 29.7297 89.1892 48.6486 0 0 0 c 0 0 0 0 0 0 5.40541 40.5405 40.5405 0 0 5.40541 2.7027 5.40541 0 0 0 g 0 0 0 0 0 0 35.1351 8.10811 0 0 0 0 0 10.8108 0 0 0 t 0 0 0 0 0 0 45.9459 24.3243 0 2.7027 100 64.8649 8.10811 35.1351 0 0 0

M09093_2.00_shift7 (FOXQ1,FOXS1)
; positions_6nt_m4 versus M09093_2.00 (FOXQ1,FOXS1); m=148/257; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.554918; -------RaATAAACAA ; cor=; Ncor= a 0 0 0 0 0 0 0 69.2308 61.5385 92.3077 0 100 100 100 0 100 76.9231 c 0 0 0 0 0 0 0 0 23.0769 7.69231 0 0 0 0 100 0 0 g 0 0 0 0 0 0 0 30.7692 0 0 0 0 0 0 0 0 15.3846 t 0 0 0 0 0 0 0 0 15.3846 0 100 0 0 0 0 0 7.69231

M09105_2.00_shift7 (FOXS1)
; positions_6nt_m4 versus M09105_2.00 (FOXS1); m=149/257; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.554918; -------RaATAAACAA ; cor=; Ncor= a 0 0 0 0 0 0 0 69.2308 61.5385 92.3077 0 100 100 100 0 100 76.9231 c 0 0 0 0 0 0 0 0 23.0769 7.69231 0 0 0 0 100 0 0 g 0 0 0 0 0 0 0 30.7692 0 0 0 0 0 0 0 0 15.3846 t 0 0 0 0 0 0 0 0 15.3846 0 100 0 0 0 0 0 7.69231

M06353_2.00_shift7 (OTP,SEBOX)
; positions_6nt_m4 versus M06353_2.00 (OTP,SEBOX); m=150/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.553143; -------YAATwAaw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.478469 84.8804 98.0861 0 41.0526 78.1818 46.6986 34.6411 0 0 c 0 0 0 0 0 0 0 31.0048 14.6411 1.5311 0 3.82775 0.76555 16.9378 17.4163 0 0 g 0 0 0 0 0 0 0 0.0956938 0.478469 0 0.191388 0 0.287081 15.1196 20.2871 0 0 t 0 0 0 0 0 0 0 68.4211 0 0.382775 99.8086 55.1196 20.7656 21.244 27.6555 0 0

M00056_2.00_shift7 (OTP,SEBOX)
; positions_6nt_m4 versus M00056_2.00 (OTP,SEBOX); m=151/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.552914; -------TAATAwat-- ; cor=; Ncor= a 0 0 0 0 0 0 0 7.09225 86.6502 87.326 0.00620964 75.1428 63.5123 66.9102 20.6916 0 0 c 0 0 0 0 0 0 0 7.09225 1.33964 1.27183 0.00620964 3.11103 5.03647 6.15964 5.75597 0 0 g 0 0 0 0 0 0 0 0.795025 1.33964 1.90458 0.00620964 1.8691 0.63506 3.08367 5.75597 0 0 t 0 0 0 0 0 0 0 85.0205 10.6705 9.4976 99.9814 19.877 30.8161 23.8465 67.7964 0 0

M00382_2.00_rc_shift5 (HOXC6_rc)
; positions_6nt_m4 versus M00382_2.00_rc (HOXC6_rc); m=152/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.552426; -----grymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 23.6621 25.2747 18.4371 34.6373 53.1765 14.6872 44.8155 58.4872 48.0589 0 0 0 c 0 0 0 0 0 23.4266 23.8028 32.2774 34.9855 9.91071 11.3246 11.0514 11.5745 17.3298 0 0 0 g 0 0 0 0 0 29.4847 34.8065 13.2549 14.6572 25.6262 8.81961 9.23087 13.1814 15.8382 0 0 0 t 0 0 0 0 0 23.4266 16.1159 36.0306 15.72 11.2866 65.1686 34.9023 16.7569 18.7731 0 0 0

M06476_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06476_2.00_rc (HOXC5,HOXC6_rc); m=153/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.551491; -------tmATAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.2857 33.3333 85.7143 0 76.1905 100 95.2381 0 0 0 c 0 0 0 0 0 0 0 23.8095 52.381 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 14.2857 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 61.9048 14.2857 0 100 23.8095 0 4.7619 0 0 0

M02075_2.00_rc_shift6 (M02075_2.00_rc)
; positions_6nt_m4 versus M02075_2.00_rc; m=154/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.551387; ------GTmRTwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 25 0.0332889 58.0219 74.1302 3.25387 41.9137 99.9001 92.2043 0 0 0 c 0 0 0 0 0 0 5.03992 16.6778 41.9137 0.0322165 0.0322165 0.0322165 0.0332889 3.87865 0 0 0 g 0 0 0 0 0 0 69.9102 0.0332889 0.0322165 25.8054 0.0322165 0.0322165 0.0332889 0.0384025 0 0 0 t 0 0 0 0 0 0 0.0499002 83.2557 0.0322165 0.0322165 96.6817 58.0219 0.0332889 3.87865 0 0 0

M03013_2.00_shift3 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m4 versus M03013_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=155/257; ncol2=13; w=-3; offset=-3; strand=D; shift=3; score=0.549765; ---AarTAAAyAAAcA- ; cor=; Ncor= a 0 0 0 73.4538 57.435 40.9533 18.8141 89.0191 95.3104 95.8486 0.412939 98.3975 94.685 88.5548 10.9282 84.7826 0 c 0 0 0 4.83584 10.9879 3.07306 8.10608 9.99383 1.75033 0.265692 36.373 1.2956 1.73885 2.51611 63.3311 4.58284 0 g 0 0 0 15.831 8.59619 49.5453 0.875657 0.771129 1.0568 3.65327 0.275292 0.306853 1.70604 3.28322 4.47663 6.46298 0 t 0 0 0 5.87936 22.9809 6.42835 72.2042 0.215916 1.88243 0.232481 62.9387 0 1.87008 5.6459 21.264 4.17156 0

M06352_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M06352_2.00_rc (OTP,SEBOX_rc); m=156/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.549674; -------yAATwAww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80 100 0 56.6667 73.3333 43.3333 26.6667 0 0 c 0 0 0 0 0 0 0 50 20 0 0 0 0 10 13.3333 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3.33333 6.66667 20 0 0 t 0 0 0 0 0 0 0 50 0 0 100 43.3333 23.3333 40 40 0 0

M09193_2.00_rc_shift3 (M09193_2.00_rc)
; positions_6nt_m4 versus M09193_2.00_rc; m=157/257; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.545891; ---arrGymATAAAa-- ; cor=; Ncor= a 0 0 0 56 47.6 40.6 14.6 4 42.2 92.4 1.6 92.8 97.8 96.2 59 0 0 c 0 0 0 12.2 16 4 6.2 56.2 46 1.2 1.6 2 0.2 1.2 13 0 0 g 0 0 0 22.6 25 43 75.4 1.2 0.6 6.2 1.8 1.8 1.2 0.8 16.2 0 0 t 0 0 0 9.2 11.4 12.4 3.8 38.6 11.2 0.2 95 3.4 0.8 1.8 11.8 0 0

M00427_2.00_rc_shift5 (M00427_2.00_rc)
; positions_6nt_m4 versus M00427_2.00_rc; m=158/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.545842; -----grymATwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.48 25.0152 10.3358 44.5757 74.2688 10.0026 47.7017 58.549 52.1553 0 0 0 c 0 0 0 0 0 21.4958 21.7472 39.473 32.6939 6.40892 4.31822 15.2559 9.20608 14.6469 0 0 0 g 0 0 0 0 0 30.504 39.2316 7.43067 7.59271 17.7732 2.34631 3.76206 11.1324 16.35 0 0 0 t 0 0 0 0 0 23.5202 14.006 42.7605 15.1377 1.54913 83.3329 33.2803 21.1125 16.8479 0 0 0

M03143_2.00_rc_shift5 (HOXC5,HOXC6,MNX1,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M03143_2.00_rc (HOXC5,HOXC6,MNX1,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=159/257; ncol2=10; w=-1; offset=-1; strand=R; shift=5; score=0.545515; -----dsyAATTAaa-- ; cor=; Ncor= a 0 0 0 0 0 34.918 20.8197 0.161812 77.5095 94.4272 1.21029 16.7464 100 52.381 43.2079 0 0 c 0 0 0 0 0 4.09836 27.377 35.1133 15.3748 5.57276 6.5053 2.51196 0 8.867 20.1309 0 0 g 0 0 0 0 0 35.082 31.3115 1.13269 0 0 0 7.77512 0 18.3908 17.8396 0 0 t 0 0 0 0 0 25.9016 20.4918 63.5922 7.11563 0 92.2844 72.9665 0 20.3612 18.8216 0 0

M08247_2.00_shift5 (ZNF382)
; positions_6nt_m4 versus M08247_2.00 (ZNF382); m=160/257; ncol2=15; w=-1; offset=-1; strand=D; shift=5; score=0.545175; -----rrwaaTAACAaa ; cor=; Ncor= a 0 0 0 0 0 33.7112 34.6917 43.076 58.4365 58.8759 9.2445 78.859 73.6795 7.2521 81.82 60.2134 52.891 c 0 0 0 0 0 23.0952 23.66 12.7142 9.0103 22.5679 9.9022 6.1146 3.3459 71.6451 7.9698 14.6187 14.3881 g 0 0 0 0 0 28.3201 25.7019 18.7102 16.4494 8.9009 10.0062 8.2326 9.3642 6.4979 3.0246 9.7926 19.0483 t 0 0 0 0 0 14.8735 15.9462 25.4997 16.1038 9.6554 70.847 6.7939 13.6104 14.6049 7.1856 15.3754 13.6727

M01107_2.00_shift7 (M01107_2.00)
; positions_6nt_m4 versus M01107_2.00; m=161/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.545082; -------aAawwAww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 62.5139 68.9816 66.0471 52.4467 52.5023 76.1535 59.0061 34.2342 0 0 c 0 0 0 0 0 0 0 1.48496 7.95531 3.00527 2.77263 3.1609 4.77193 5.04118 2.78215 0 0 g 0 0 0 0 0 0 0 17.9105 10.9555 6.89205 3.5247 3.03696 4.44932 4.21075 4.82217 0 0 t 0 0 0 0 0 0 0 18.0905 12.1077 24.0556 41.256 41.2998 14.6253 31.742 58.1615 0 0

M06499_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06499_2.00_rc (HOXC5,HOXC6_rc); m=162/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score= 0.5447; -------YMATTAAr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 70 100 0 15 100 100 45 0 0 c 0 0 0 0 0 0 0 30 30 0 0 0 0 0 15 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 t 0 0 0 0 0 0 0 70 0 0 100 85 0 0 15 0 0

M06273_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06273_2.00_rc (HOXC5,HOXC6_rc); m=163/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score= 0.5447; -------YMATTAAr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 70 100 0 15 100 100 45 0 0 c 0 0 0 0 0 0 0 30 30 0 0 0 0 0 15 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 t 0 0 0 0 0 0 0 70 0 0 100 85 0 0 15 0 0

M01106_2.00_shift7 (M01106_2.00)
; positions_6nt_m4 versus M01106_2.00; m=164/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.542189; -------aawwwAww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 48.3861 55.0968 56.1595 51.3647 59.7236 76.3937 58.2011 38.0653 0 0 c 0 0 0 0 0 0 0 9.20009 14.0005 5.86027 4.01064 3.7424 3.69101 0.774067 2.03258 0 0 g 0 0 0 0 0 0 0 21.525 16.7616 11.4524 6.95145 3.09481 3.37333 2.78404 0.203784 0 0 t 0 0 0 0 0 0 0 20.8888 14.1412 26.5279 37.6733 33.4392 16.542 38.2408 59.6983 0 0

M09173_2.00_rc_shift3 (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc)
; positions_6nt_m4 versus M09173_2.00_rc (HOXC5,NANOGP8,NKX1-1,NKX1-2,TLX1_rc); m=165/257; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.541853; ---rrrGymATAAAa-- ; cor=; Ncor= a 0 0 0 43.8 38.4 42.4 17 0.8 46.4 96.2 0.2 85.6 98.2 93.4 52.8 0 0 c 0 0 0 15 18.4 4.4 8.6 59.6 45.6 0 0 6.4 0.8 1.4 17.2 0 0 g 0 0 0 26.8 32 31 71.4 0.6 0.4 3.4 0.2 5.8 0.2 4.4 21.6 0 0 t 0 0 0 14.4 11.2 22.2 3 39 7.6 0.4 99.6 2.2 0.8 0.8 8.4 0 0

M10572_2.00_shift7 (FOXS1)
; positions_6nt_m4 versus M10572_2.00 (FOXS1); m=166/257; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.541799; -------AwATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 78.5714 50 71.4286 0 100 100 100 0 85.7143 57.1429 c 0 0 0 0 0 0 0 0 14.2857 21.4286 7.14286 0 0 0 100 0 0 g 0 0 0 0 0 0 0 14.2857 0 7.14286 0 0 0 0 0 0 14.2857 t 0 0 0 0 0 0 0 7.14286 35.7143 0 92.8571 0 0 0 0 14.2857 28.5714

M00447_2.00_rc_shift5 (M00447_2.00_rc)
; positions_6nt_m4 versus M00447_2.00_rc; m=167/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.53906; -----grymATwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.4899 25.7031 9.83479 42.1201 69.7472 6.45151 52.7099 56.9509 52.035 0 0 0 c 0 0 0 0 0 22.1594 20.8345 41.0966 31.2033 6.52002 4.03221 11.7612 9.79811 15.6726 0 0 0 g 0 0 0 0 0 30.5164 39.9094 7.97193 7.17444 21.8648 0.00950739 3.2375 10.0965 13.9004 0 0 0 t 0 0 0 0 0 22.8343 13.553 41.0966 19.5021 1.86802 89.5068 32.2915 23.1545 18.392 0 0 0

M09170_2.00_shift7 (HOXC6)
; positions_6nt_m4 versus M09170_2.00 (HOXC6); m=168/257; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.538849; -------wCATAAAyyr ; cor=; Ncor= a 0 0 0 0 0 0 0 30.7692 9.89011 100 0 90.1099 100 91.2088 9.89011 10.989 60.4396 c 0 0 0 0 0 0 0 9.89011 80.2198 0 0 0 0 0 30.7692 39.5604 9.89011 g 0 0 0 0 0 0 0 17.5824 0 0 0 0 0 0 8.79121 9.89011 29.6703 t 0 0 0 0 0 0 0 41.7582 9.89011 0 100 9.89011 0 8.79121 50.5495 39.5604 0

M09130_2.00_shift7 (HOXA9,HOXC5,HOXC6)
; positions_6nt_m4 versus M09130_2.00 (HOXA9,HOXC5,HOXC6); m=169/257; ncol2=12; w=0; offset=1; strand=D; shift=7; score=0.538849; -------wCATAAAyyr ; cor=; Ncor= a 0 0 0 0 0 0 0 30.7692 9.89011 100 0 90.1099 100 91.2088 9.89011 10.989 60.4396 c 0 0 0 0 0 0 0 9.89011 80.2198 0 0 0 0 0 30.7692 39.5604 9.89011 g 0 0 0 0 0 0 0 17.5824 0 0 0 0 0 0 8.79121 9.89011 29.6703 t 0 0 0 0 0 0 0 41.7582 9.89011 0 100 9.89011 0 8.79121 50.5495 39.5604 0

M00474_2.00_rc_shift5 (M00474_2.00_rc)
; positions_6nt_m4 versus M00474_2.00_rc; m=170/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.53025; -----gvymrtwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.5353 25.5458 18.9608 28.7651 42.1678 18.2144 46.128 57.3117 51.9248 0 0 0 c 0 0 0 0 0 22.4235 25.8026 27.1771 38.8288 11.9611 17.1537 11.375 13.3099 14.7287 0 0 0 g 0 0 0 0 0 28.5059 33.4641 15.6798 14.4279 33.1704 12.5813 13.0844 13.4436 13.0632 0 0 0 t 0 0 0 0 0 24.5353 15.1875 38.1823 17.9782 12.7007 52.0505 29.4125 15.9348 20.2833 0 0 0

M06372_2.00_rc_shift7 (HOXC6,NKX1-1,NKX1-2_rc)
; positions_6nt_m4 versus M06372_2.00_rc (HOXC6,NKX1-1,NKX1-2_rc); m=171/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.529694; -------CWATTAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 68 92 0 12 100 92 60 0 0 c 0 0 0 0 0 0 0 88 4 0 0 0 0 4 16 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 4 16 0 0 t 0 0 0 0 0 0 0 12 28 8 100 88 0 0 8 0 0

M06550_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m4 versus M06550_2.00_rc (DBX1,DBX2,HLX_rc); m=172/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.52726; -------TmATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 50 100 0 50 87.5 87.5 0 0 0 c 0 0 0 0 0 0 0 18.75 37.5 0 0 12.5 0 0 0 0 0 g 0 0 0 0 0 0 0 0 12.5 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 81.25 0 0 100 37.5 12.5 12.5 0 0 0

M06369_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M06369_2.00_rc (OTP,SEBOX_rc); m=173/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.527255; -------YAATwAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.452233 81.7976 94.234 0.0565291 29.9039 80.4975 48.1628 33.1826 0 0 c 0 0 0 0 0 0 0 27.1905 13.9062 4.52233 0.791408 3.61786 0.734878 13.3409 19.6156 0 0 g 0 0 0 0 0 0 0 0.169587 2.14811 1.01752 0.0565291 0.734878 2.99604 20.1244 23.5161 0 0 t 0 0 0 0 0 0 0 72.1877 2.14811 0.226116 99.0955 65.7434 15.7716 18.372 23.6857 0 0

M00421_2.00_rc_shift6 (HOXC6_rc)
; positions_6nt_m4 versus M00421_2.00_rc (HOXC6_rc); m=174/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.526227; ------gTmATwAA--- ; cor=; Ncor= a 0 0 0 0 0 0 20.6926 1.18768 37.3687 83.3105 9.80988 33.3301 97.9503 91.1058 0 0 0 c 0 0 0 0 0 0 17.2467 21.1783 57.5626 1.96982 0.00980008 0.00980008 0.0100969 2.54302 0 0 0 g 0 0 0 0 0 0 55.1516 3.53951 0.0100969 14.7099 0.00980008 0.00980008 0.0100969 0.0126518 0 0 0 t 0 0 0 0 0 0 6.90903 74.0945 5.05856 0.00980008 90.1705 66.6503 2.02948 6.33856 0 0 0

M01667_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01667_2.00 (ARID3B,ARID3C); m=175/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.525958; -------yrATyaaa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.5252 30.832 94.1882 5.17629 19.1668 56.2171 50.2612 41.6728 0 0 c 0 0 0 0 0 0 0 27.1045 19.6593 0.0248548 3.50464 30.9749 10.0666 15.9145 14.8775 0 0 g 0 0 0 0 0 0 0 21.5355 25.4968 0.0593262 0.0248248 8.87446 16.2683 17.5883 23.567 0 0 t 0 0 0 0 0 0 0 26.8348 24.012 5.72759 91.2942 40.9838 17.4479 16.236 19.8827 0 0

M01108_2.00_shift7 (M01108_2.00)
; positions_6nt_m4 versus M01108_2.00; m=176/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.525605; -------waawwAww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 42.3349 53.6851 59.1376 50.1697 57.7953 85.2706 52.0642 27.9377 0 0 c 0 0 0 0 0 0 0 12.4985 10.731 5.31146 3.50928 2.99489 2.84576 1.48065 6.82081 0 0 g 0 0 0 0 0 0 0 19.9976 18.4144 11.0217 4.83273 1.98756 1.85119 3.82852 6.68575 0 0 t 0 0 0 0 0 0 0 25.169 17.1695 24.5293 41.4883 37.2223 10.0325 42.6266 58.5557 0 0

M06275_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06275_2.00_rc (HOXC5,HOXC6_rc); m=177/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.525495; -------YmATWAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 2.25564 43.985 91.3534 0 25.188 96.9925 79.3233 44.7368 0 0 c 0 0 0 0 0 0 0 26.3158 48.8722 0 1.12782 0 0.75188 3.00752 18.4211 0 0 g 0 0 0 0 0 0 0 0 1.50376 8.64662 0 0 0 6.76692 16.9173 0 0 t 0 0 0 0 0 0 0 71.4286 5.6391 0 98.8722 74.812 2.25564 10.9023 19.9248 0 0

M01664_2.00_shift7 (ARID3B,ARID3C)
; positions_6nt_m4 versus M01664_2.00 (ARID3B,ARID3C); m=178/257; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.52439; -------ywATyaaa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 22.7052 36.4833 95.4295 0.322618 18.0785 60.1595 50.0975 40.0462 0 0 c 0 0 0 0 0 0 0 26.9126 11.2105 0.0149714 2.20056 42.2972 7.14919 14.6431 14.8803 0 0 g 0 0 0 0 0 0 0 20.3401 24.4555 0.0360946 0.0879235 6.0178 18.8592 17.0129 22.1987 0 0 t 0 0 0 0 0 0 0 30.042 27.8506 4.51944 97.3889 33.6065 13.8322 18.2465 22.8748 0 0

M00436_2.00_rc_shift6 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00436_2.00_rc (HOXC5,HOXC6_rc); m=179/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.52016; ------gymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 0 24.3036 18.7831 30.688 57.7296 17.1082 32.5762 52.4827 37.6344 0 0 0 c 0 0 0 0 0 0 21.772 39.3682 34.6006 12.3761 12.8015 12.5986 15.6502 21.9314 0 0 0 g 0 0 0 0 0 0 35.1851 12.9742 17.1822 20.817 10.3767 9.0574 12.9421 18.5028 0 0 0 t 0 0 0 0 0 0 18.7393 28.8745 17.5293 9.07724 59.7136 45.7679 18.925 21.9314 0 0 0

M06202_2.00_shift2 (FOXP4)
; positions_6nt_m4 versus M06202_2.00 (FOXP4); m=180/257; ncol2=14; w=-4; offset=-4; strand=D; shift=2; score=0.518918; --aarrbyAAAAAAAt- ; cor=; Ncor= a 0 0 59.0909 54.5455 36.3636 45.4545 9.09091 4.54545 90.9091 100 100 100 100 100 100 18.1818 0 c 0 0 18.1818 13.6364 13.6364 22.7273 36.3636 40.9091 0 0 0 0 0 0 0 4.54545 0 g 0 0 22.7273 18.1818 36.3636 27.2727 27.2727 18.1818 9.09091 0 0 0 0 0 0 18.1818 0 t 0 0 0 13.6364 13.6364 4.54545 27.2727 36.3636 0 0 0 0 0 0 0 59.0909 0

M03179_2.00_shift6 (LMX1A,OTP,SEBOX)
; positions_6nt_m4 versus M03179_2.00 (LMX1A,OTP,SEBOX); m=181/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.518615; ------tTAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 13.0477 7.19539 83.4835 96.8948 2.70778 12.1113 81.4272 54.7327 0 0 0 c 0 0 0 0 0 0 23.1687 16.5727 5.11876 0.681242 0.98607 4.89739 1.6376 13.7486 0 0 0 g 0 0 0 0 0 0 19.7515 1.26256 5.92411 0.522814 0.57912 5.9927 11.6895 22.1187 0 0 0 t 0 0 0 0 0 0 44.032 74.9694 5.47366 1.90114 95.727 76.9986 5.24564 9.40003 0 0 0

M06538_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M06538_2.00_rc (OTP,SEBOX_rc); m=182/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.517675; -------yAATwAw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80 100 0 56.6667 73.3333 43.3333 0 0 0 c 0 0 0 0 0 0 0 50 20 0 0 0 0 10 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3.33333 6.66667 0 0 0 t 0 0 0 0 0 0 0 50 0 0 100 43.3333 23.3333 40 0 0 0

M01687_2.00_shift6 (M01687_2.00)
; positions_6nt_m4 versus M01687_2.00; m=183/257; ncol2=8; w=0; offset=0; strand=D; shift=6; score=0.517662; ------AAAWTAAT--- ; cor=; Ncor= a 0 0 0 0 0 0 83.9058 88.161 83.2686 69.3951 16.6759 83.2686 76.4101 18.5281 0 0 0 c 0 0 0 0 0 0 0.0399361 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 2.9671 3.73521 0 0 0 g 0 0 0 0 0 0 12.0208 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 0.0293772 0.0369822 0 0 0 t 0 0 0 0 0 0 4.03355 11.7803 16.6759 30.5494 83.2686 16.6759 20.5934 77.6997 0 0 0

M10748_2.00_rc_shift5 (PBX1_rc)
; positions_6nt_m4 versus M10748_2.00_rc (PBX1_rc); m=184/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.517007; -----AyyAATmAw--- ; cor=; Ncor= a 0 0 0 0 0 75 18.75 6.25 81.25 87.5 12.5 25 87.5 62.5 0 0 0 c 0 0 0 0 0 6.25 25 56.25 6.25 0 0 62.5 0 0 0 0 0 g 0 0 0 0 0 0 6.25 12.5 0 0 0 0 6.25 0 0 0 0 t 0 0 0 0 0 18.75 50 25 12.5 12.5 87.5 12.5 6.25 37.5 0 0 0

M03046_2.00_shift9 (FOXI2,FOXI3,FOXJ3)
; positions_6nt_m4 versus M03046_2.00 (FOXI2,FOXI3,FOXJ3); m=185/257; ncol2=8; w=0; offset=3; strand=D; shift=9; score=0.516993; ---------rTAAAcAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 45.3438 12.9527 91.046 92.2151 90.047 23.4165 99.3945 70.5774 c 0 0 0 0 0 0 0 0 0 0 4.91099 3.56577 0.963082 0 55.1344 0 9.09091 g 0 0 0 0 0 0 0 0 0 54.6562 11.6022 3.09033 2.16693 4.62382 14.3954 0.605536 7.55528 t 0 0 0 0 0 0 0 0 0 0 70.5341 2.29794 4.6549 5.32915 7.05374 0 12.7764

M06373_2.00_rc_shift7 (HOXC6,NKX1-1,NKX1-2_rc)
; positions_6nt_m4 versus M06373_2.00_rc (HOXC6,NKX1-1,NKX1-2_rc); m=186/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.515742; -------yaATTAAa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.90476 53.545 76.5079 0 20.5291 100 68.8889 39.6825 0 0 c 0 0 0 0 0 0 0 59.1534 17.3545 2.22222 0 0 0 5.71429 22.4339 0 0 g 0 0 0 0 0 0 0 0 5.60847 6.24339 0 0 0 16.0847 22.328 0 0 t 0 0 0 0 0 0 0 38.9418 23.4921 15.0265 100 79.4709 0 9.31217 15.5556 0 0

M00391_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00391_2.00_rc (HOXC5,HOXC6_rc); m=187/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.513239; -----kgymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 22.9617 23.2602 17.2564 34.862 57.617 17.4107 33.3467 54.8166 40.9599 0 0 0 c 0 0 0 0 0 22.507 23.0288 34.7501 33.1617 11.9869 13.1587 12.8965 13.9293 19.9373 0 0 0 g 0 0 0 0 0 28.8996 36.4793 14.2703 16.4676 20.7764 12.7698 11.7866 15.5489 18.965 0 0 0 t 0 0 0 0 0 25.6317 17.2316 33.7231 15.5086 9.61974 56.6608 41.9702 15.7052 20.1377 0 0 0

M05001_2.00_rc_shift6 (HOXB6,HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M05001_2.00_rc (HOXB6,HOXC5,HOXC6_rc); m=188/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.511578; ------gymATwAa--- ; cor=; Ncor= a 0 0 0 0 0 0 21.4308 0.796701 56.0765 87.3471 3.6541 26.6818 80.9339 45.1019 0 0 0 c 0 0 0 0 0 0 15.5562 47.6635 30.1427 6.28286 0 1.87452 0.349886 17.9597 0 0 0 g 0 0 0 0 0 0 52.052 0 3.55897 4.28878 0 3.97676 10.2355 22.9851 0 0 0 t 0 0 0 0 0 0 10.961 51.5398 10.2219 2.08122 96.3459 67.4669 8.48069 13.9532 0 0 0

M06301_2.00_rc_shift7 (NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06301_2.00_rc (NKX1-1,NKX1-2,OTP,SEBOX_rc); m=189/257; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.510504; -------YAATTAaa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 100 100 0 3.57143 96.4286 67.8571 46.4286 0 0 c 0 0 0 0 0 0 0 25 0 0 0 0 0 14.2857 21.4286 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 14.2857 10.7143 0 0 t 0 0 0 0 0 0 0 75 0 0 100 96.4286 3.57143 3.57143 21.4286 0 0

M09677_2.00_rc_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M09677_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=190/257; ncol2=8; w=0; offset=0; strand=R; shift=6; score=0.509169; ------cyAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 14.3763 6.69643 88.9913 96.503 0.372024 2.08333 90.997 53.9305 0 0 0 c 0 0 0 0 0 0 43.4136 38.7487 7.58605 2.15774 0.372024 10.7143 1.11607 7.67016 0 0 0 g 0 0 0 0 0 0 24.9741 2.52976 1.71131 0.372024 0.967262 2.97619 1.11607 16.5211 0 0 0 t 0 0 0 0 0 0 17.236 52.0251 1.71131 0.967262 98.2887 84.2262 6.77083 21.8782 0 0 0

M09152_2.00_rc_shift3 (CDX2_rc)
; positions_6nt_m4 versus M09152_2.00_rc (CDX2_rc); m=191/257; ncol2=12; w=-3; offset=-3; strand=R; shift=3; score=0.506898; ---amwGCmATaAAa-- ; cor=; Ncor= a 0 0 0 58.2781 31.1258 43.7086 9.27152 0 64.2384 92.7152 0 49.6689 82.7815 80.7947 51.6556 0 0 c 0 0 0 17.2185 35.0993 8.60927 13.245 80.7947 31.1258 1.3245 0.662252 17.2185 6.62252 5.96026 21.1921 0 0 g 0 0 0 23.1788 19.8675 21.1921 76.1589 0.662252 0 5.29801 0.662252 24.5033 0 7.28477 11.9205 0 0 t 0 0 0 1.3245 13.9073 26.4901 1.3245 18.543 4.63576 0.662252 98.6755 8.60927 10.596 5.96026 15.2318 0 0

M06489_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m4 versus M06489_2.00_rc (DBX1,DBX2,HLX_rc); m=192/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.50412; -------ThATwAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3.125 46.875 100 3.125 43.75 90.625 59.375 0 0 0 c 0 0 0 0 0 0 0 21.875 28.125 0 0 3.125 0 12.5 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 3.125 3.125 9.375 0 0 0 t 0 0 0 0 0 0 0 75 25 0 96.875 50 6.25 18.75 0 0 0

M00477_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M00477_2.00_rc (HOXC5,HOXC6_rc); m=193/257; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.502827; -----ggymatwaa--- ; cor=; Ncor= a 0 0 0 0 0 24.9294 24.1345 18.7621 36.4827 62.9137 19.8235 31.0419 61.7893 38.7129 0 0 0 c 0 0 0 0 0 21.0321 21.6205 31.2444 30.7792 5.32155 6.53301 7.42861 5.66174 17.5697 0 0 0 g 0 0 0 0 0 29.8459 36.0045 17.1473 19.0457 21.3652 18.6691 17.0362 19.5648 24.6844 0 0 0 t 0 0 0 0 0 24.1926 18.2405 32.8463 13.6924 10.3996 54.9744 44.4933 12.9842 19.033 0 0 0

M00499_2.00_rc_shift6 (DBX1,DBX2,HLX_rc)
; positions_6nt_m4 versus M00499_2.00_rc (DBX1,DBX2,HLX_rc); m=194/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.498721; ------byaatwa---- ; cor=; Ncor= a 0 0 0 0 0 0 18.0902 17.5178 38.8597 66.7958 21.3722 30.0299 48.6211 0 0 0 0 c 0 0 0 0 0 0 25.4159 36.3509 20.4904 13.0873 14.7625 16.8137 14.9402 0 0 0 0 g 0 0 0 0 0 0 29.2352 13.2397 24.5315 5.93959 8.60284 18.9574 15.8641 0 0 0 0 t 0 0 0 0 0 0 27.2587 32.8916 16.1183 14.1773 55.2624 34.1989 20.5746 0 0 0 0

M10571_2.00_shift5 (FOXS1)
; positions_6nt_m4 versus M10571_2.00 (FOXS1); m=195/257; ncol2=16; w=-1; offset=-1; strand=D; shift=5; score=0.497389; -----wwaarTAAATAk ; cor=; Ncor= a 0 0 0 0 0 44.4444 63.6364 45.4545 66.6667 66.6667 0 100 100 100 0 100 6.66667 c 0 0 0 0 0 22.2222 9.09091 18.1818 8.33333 0 0 0 0 0 20 0 6.66667 g 0 0 0 0 0 0 0 18.1818 16.6667 33.3333 0 0 0 0 0 0 26.6667 t 0 0 0 0 0 33.3333 27.2727 18.1818 8.33333 0 100 0 0 0 80 0 60

M03775_2.00_rc_shift2 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M03775_2.00_rc (HOXC5,HOXC6_rc); m=196/257; ncol2=14; w=-4; offset=-4; strand=R; shift=2; score=0.496445; --aAAAsmCATwAAAh- ; cor=; Ncor= a 0 0 62.0758 78.5266 81.8627 81.5961 5.42477 46.9101 0.19685 99.0119 2.11538 62.7639 96.9052 98.2353 75.6798 31 0 c 0 0 9.18164 7.83699 9.47712 2.11726 51.2794 31.0861 98.622 0.197628 1.53846 2.4952 0.193424 0.588235 11.7825 31.6 0 g 0 0 16.3673 6.42633 1.14379 10.5863 32.7533 11.8914 0 0 0 1.34357 0.773694 1.17647 2.87009 8.8 0 t 0 0 12.3752 7.21003 7.51634 5.70033 10.5425 10.1124 1.1811 0.790514 96.3462 33.3973 2.12766 0 9.66767 28.6 0

M06291_2.00_rc_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06291_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=197/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.486217; ------TAAWTWA---- ; cor=; Ncor= a 0 0 0 0 0 0 5.88235 70.5882 100 29.4118 0 70.5882 88.2353 0 0 0 0 c 0 0 0 0 0 0 23.5294 17.6471 0 0 0 0 5.88235 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 5.88235 0 0 0 0 t 0 0 0 0 0 0 70.5882 11.7647 0 70.5882 100 29.4118 0 0 0 0 0

M03864_2.00_rc_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,TLX1_rc)
; positions_6nt_m4 versus M03864_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,TLX1_rc); m=198/257; ncol2=16; w=0; offset=0; strand=R; shift=6; score=0.485787; ------yyAATwAamyA ; cor=; Ncor= a 0 0 0 0 0 0 7.90395 2.99517 81.7327 93.1532 0.247647 53.977 76.5697 58.95 25.1126 3.29032 84.5309 c 0 0 0 0 0 0 36.3182 55.0725 4.82223 2.7946 0.544824 19.905 4.44104 11.35 41.4207 64.5161 4.3956 g 0 0 0 0 0 0 11.1056 0.434783 5.63956 0.41919 0.148588 0.949743 1.95253 9.65 9.75488 1.41935 1.43702 t 0 0 0 0 0 0 44.6723 41.4976 7.80548 3.63298 99.0589 25.1682 17.0368 20.05 23.7119 30.7742 9.63652

M10558_2.00_shift4 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1)
; positions_6nt_m4 versus M10558_2.00 (FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXE3,FOXI3,FOXL1,FOXS1); m=199/257; ncol2=16; w=-2; offset=-2; strand=D; shift=4; score=0.485496; ----wwdayATAAAyAw ; cor=; Ncor= a 0 0 0 0 30.4348 43.4783 26.087 56.5217 17.3913 91.3043 0 95.6522 100 100 0 91.3043 39.1304 c 0 0 0 0 4.34783 17.3913 13.0435 17.3913 43.4783 0 8.69565 4.34783 0 0 60.8696 4.34783 17.3913 g 0 0 0 0 17.3913 8.69565 26.087 17.3913 8.69565 8.69565 0 0 0 0 0 4.34783 8.69565 t 0 0 0 0 47.8261 30.4348 34.7826 8.69565 30.4348 0 91.3043 0 0 0 39.1304 0 34.7826

M00216_2.00_rc_shift9 (TBPL2_rc)
; positions_6nt_m4 versus M00216_2.00_rc (TBPL2_rc); m=200/257; ncol2=7; w=0; offset=3; strand=R; shift=9; score=0.482326; ---------wTwwaww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 48.65 1.44887 63.9678 37.1463 51.5031 40.0342 32.36 0 c 0 0 0 0 0 0 0 0 0 10.4296 19.121 6.94748 9.53399 12.3251 11.2429 17.0632 0 g 0 0 0 0 0 0 0 0 0 11.9969 7.85215 0.0533106 0.0769087 12.3251 11.0202 18.8577 0 t 0 0 0 0 0 0 0 0 0 28.9234 71.578 29.0314 53.2428 23.8466 37.7028 31.7192 0

M06472_2.00_shift7 (M06472_2.00)
; positions_6nt_m4 versus M06472_2.00; m=201/257; ncol2=7; w=0; offset=1; strand=D; shift=7; score=0.481437; -------hAATCAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 40 100 100 0 0 100 80 0 0 0 c 0 0 0 0 0 0 0 26.6667 0 0 0 100 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 13.3333 0 0 0 t 0 0 0 0 0 0 0 33.3333 0 0 100 0 0 6.66667 0 0 0

M00364_2.00_rc_shift6 (POU3F4_rc)
; positions_6nt_m4 versus M00364_2.00_rc (POU3F4_rc); m=202/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.481384; ------ykmAtwa---- ; cor=; Ncor= a 0 0 0 0 0 0 22.7771 20.2943 38.6696 68.5506 14.8432 36.204 37.593 0 0 0 0 c 0 0 0 0 0 0 25.6811 17.8203 29.2258 5.62697 12.1526 11.4635 15.1321 0 0 0 0 g 0 0 0 0 0 0 17.5623 29.0884 16.6941 17.5942 10.3557 10.2694 22.5745 0 0 0 0 t 0 0 0 0 0 0 33.9795 32.7971 15.4106 8.22823 62.6485 42.0631 24.7004 0 0 0 0

M06215_2.00_shift7 (OTP,SEBOX)
; positions_6nt_m4 versus M06215_2.00 (OTP,SEBOX); m=203/257; ncol2=6; w=0; offset=1; strand=D; shift=7; score=0.480864; -------yAAThA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.33333 100 100 0 33.3333 91.6667 0 0 0 0 c 0 0 0 0 0 0 0 33.3333 0 0 8.33333 25 0 0 0 0 0 g 0 0 0 0 0 0 0 16.6667 0 0 8.33333 8.33333 8.33333 0 0 0 0 t 0 0 0 0 0 0 0 41.6667 0 0 83.3333 33.3333 0 0 0 0 0

M09680_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M09680_2.00_rc (HOXC5,HOXC6_rc); m=204/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.479503; -------ymATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 11.0101 52.4874 97.1591 0.568182 18.3523 87.6515 72.3295 0 0 0 c 0 0 0 0 0 0 0 40.7576 38.1187 0.94697 0.94697 2.72096 3.73737 5.15783 0 0 0 g 0 0 0 0 0 0 0 5.25253 3.95202 1.32576 0.568182 0.852273 1.51515 12.3043 0 0 0 t 0 0 0 0 0 0 0 42.9798 5.44192 0.568182 97.9167 78.0745 7.09596 10.2083 0 0 0

M08960_2.00_rc_shift3 (ZNF350_rc)
; positions_6nt_m4 versus M08960_2.00_rc (ZNF350_rc); m=205/257; ncol2=18; w=-3; offset=-3; strand=R; shift=3; score=0.474161; ---twgGwmatAAAArr ; cor=; Ncor= a 0 0 0 19.8 37.2 23.4 16.4 25.4 25.8 65.6 17.2 77.6 94.8 96.4 76.6 36.4 30.4 c 0 0 0 24.2 11 5.6 10.6 8.6 43.4 7.6 11.8 6.2 1.8 1.6 1.8 5.4 5.6 g 0 0 0 13.2 19.6 67 68.2 18.2 6.4 3.6 19 11.2 2.8 1.8 14 53.4 57.4 t 0 0 0 42.8 32.2 4 4.8 47.8 24.4 23.2 52 5 0.6 0.2 7.6 4.8 6.6

M07765_2.00_rc_shift0 (ZNF492_rc)
; positions_6nt_m4 versus M07765_2.00_rc (ZNF492_rc); m=206/257; ncol2=18; w=-6; offset=-6; strand=R; shift=0; score=0.473758; amAARArcAmyAAAAAG ; cor=; Ncor= a 65.0267 45.2293 71.1871 69.9749 25.0249 94.2682 35.6812 22.5508 95.7834 57.8531 12.2473 96.3895 87.6012 99.7727 99.7727 69.9251 4.97422 c 17.1955 27.499 3.71229 3.40925 0.075761 1.89403 7.34882 61.4897 0.681849 28.9147 41.0365 1.59098 2.50011 0.075761 0.075761 1.94378 0.075761 g 11.9442 14.6716 8.91379 18.5614 74.8236 0.681849 56.8943 12.8534 2.80316 13.1564 14.1153 0.681849 9.21683 0.075761 0.075761 24.4188 94.8743 t 5.8336 12.6001 16.1868 8.05441 0.075761 3.15595 0.075761 3.1062 0.7316 0.075761 32.601 1.33769 0.681849 0.075761 0.075761 3.71229 0.075761

M00366_2.00_rc_shift6 (POU3F4_rc)
; positions_6nt_m4 versus M00366_2.00_rc (POU3F4_rc); m=207/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.468014; ------ykmaTww---- ; cor=; Ncor= a 0 0 0 0 0 0 21.3714 21.1802 34.5888 66.772 13.6384 41.6191 40.8076 0 0 0 0 c 0 0 0 0 0 0 25.8434 11.978 40.5903 4.39859 6.37822 9.37981 17.0964 0 0 0 0 g 0 0 0 0 0 0 14.6151 39.3725 12.3484 12.1981 5.32754 11.3425 16.5911 0 0 0 0 t 0 0 0 0 0 0 38.1702 27.4693 12.4725 16.6313 74.6559 37.6585 25.5048 0 0 0 0

M11388_2.00_shift7 (TBP,TBPL2)
; positions_6nt_m4 versus M11388_2.00 (TBP,TBPL2); m=208/257; ncol2=15; w=0; offset=1; strand=D; shift=7; score=0.464341; -------sTATAWAwrs ; cor=; Ncor= a 0 0 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 c 0 0 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 g 0 0 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 t 0 0 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393

M11491_2.00_shift7 (M11491_2.00)
; positions_6nt_m4 versus M11491_2.00; m=209/257; ncol2=15; w=0; offset=1; strand=D; shift=7; score=0.464341; -------sTATAWAwrs ; cor=; Ncor= a 0 0 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 c 0 0 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 g 0 0 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 t 0 0 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393

M00365_2.00_shift6 (POU3F4)
; positions_6nt_m4 versus M00365_2.00 (POU3F4); m=210/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.463738; ------tgmatww---- ; cor=; Ncor= a 0 0 0 0 0 0 22.4589 22.08 32.1329 59.7235 20.9486 46.3542 34.4888 0 0 0 0 c 0 0 0 0 0 0 22.9126 13.6627 38.0873 5.41799 8.18311 8.63921 20.0983 0 0 0 0 g 0 0 0 0 0 0 16.4724 41.0452 15.4851 15.1761 10.4028 14.2437 18.553 0 0 0 0 t 0 0 0 0 0 0 38.1561 23.2121 14.2946 19.6824 60.4655 30.763 26.8599 0 0 0 0

M06250_2.00_rc_shift7 (DBX1,DBX2,HLX_rc)
; positions_6nt_m4 versus M06250_2.00_rc (DBX1,DBX2,HLX_rc); m=211/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.462693; -------ThWwwwA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6.25 43.75 75 34.375 40.625 65.625 75 0 0 0 c 0 0 0 0 0 0 0 21.875 28.125 0 0 3.125 0 9.375 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3.125 3.125 0 0 0 t 0 0 0 0 0 0 0 71.875 28.125 25 65.625 56.25 31.25 12.5 0 0 0

M00360_2.00_shift6 (POU4F3)
; positions_6nt_m4 versus M00360_2.00 (POU4F3); m=212/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.46164; ------tgmataw---- ; cor=; Ncor= a 0 0 0 0 0 0 22.2454 20.8561 32.9493 58.1249 16.4889 50.4778 33.8573 0 0 0 0 c 0 0 0 0 0 0 17.8523 13.7034 40.6489 16.4874 15.3742 8.94894 21.3735 0 0 0 0 g 0 0 0 0 0 0 15.9927 42.8474 12.8709 15.6833 12.8416 17.6641 17.325 0 0 0 0 t 0 0 0 0 0 0 43.9096 22.5931 13.5308 9.70454 55.2953 22.9091 27.4442 0 0 0 0

M06546_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M06546_2.00_rc (OTP,SEBOX_rc); m=213/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.46022; -------TAATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 94.7368 94.7368 0 10.5263 89.4737 68.4211 0 0 0 c 0 0 0 0 0 0 0 21.0526 5.26316 5.26316 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 21.0526 0 0 0 t 0 0 0 0 0 0 0 78.9474 0 0 100 89.4737 10.5263 10.5263 0 0 0

M06239_2.00_rc_shift7 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06239_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=214/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.458766; -------yAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 78.3751 99.8208 0 12.0669 88.172 49.5818 0 0 0 c 0 0 0 0 0 0 0 40.681 15.4719 0 0 12.6045 0 12.724 0 0 0 g 0 0 0 0 0 0 0 0 0.896057 0 0 0 1.19474 22.4612 0 0 0 t 0 0 0 0 0 0 0 59.319 5.25687 0.179211 100 75.3286 10.6332 15.233 0 0 0

M06548_2.00_rc_shift7 (HOXC6,NKX1-1,NKX1-2_rc)
; positions_6nt_m4 versus M06548_2.00_rc (HOXC6,NKX1-1,NKX1-2_rc); m=215/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.458558; -------CWATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 68 92 0 12 100 92 0 0 0 c 0 0 0 0 0 0 0 88 4 0 0 0 0 4 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 t 0 0 0 0 0 0 0 12 28 8 100 88 0 0 0 0 0

M01567_2.00_shift6 (TBPL2)
; positions_6nt_m4 versus M01567_2.00 (TBPL2); m=216/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.458198; ------wwwwtAw---- ; cor=; Ncor= a 0 0 0 0 0 0 31.5311 34.5705 27.1982 58.3542 21.9565 93.4996 42.2777 0 0 0 0 c 0 0 0 0 0 0 18.9343 14.1966 11.058 0.086859 0.643432 0.0353646 0.0470878 0 0 0 0 g 0 0 0 0 0 0 20.7174 21.1788 15.5359 11.0954 18.8981 5.19636 9.52823 0 0 0 0 t 0 0 0 0 0 0 28.8172 30.0541 46.2079 30.4636 58.502 1.26866 48.147 0 0 0 0

M06302_2.00_rc_shift7 (NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06302_2.00_rc (NKX1-1,NKX1-2,OTP,SEBOX_rc); m=217/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.455411; -------yAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1.33983 84.8965 100 0 5.60292 93.7881 63.581 0 0 0 c 0 0 0 0 0 0 0 32.5213 11.3276 0 0 0.852619 0 5.60292 0 0 0 g 0 0 0 0 0 0 0 4.3849 1.58343 0 0 0 2.07065 20.9501 0 0 0 t 0 0 0 0 0 0 0 61.754 2.19245 0 100 93.5445 4.14129 9.86602 0 0 0

M02228_2.00_shift4 (OTP,SEBOX)
; positions_6nt_m4 versus M02228_2.00 (OTP,SEBOX); m=218/257; ncol2=10; w=-2; offset=-2; strand=D; shift=4; score=0.455079; ----wtkTAATwwa--- ; cor=; Ncor= a 0 0 0 0 33.4982 21.0546 13.4708 2.79186 87.2504 97.7176 0.356511 42.4012 59.1052 34.5635 0 0 0 c 0 0 0 0 17.8409 23.739 24.5455 20.2207 7.83642 0.972468 0.90358 7.07931 3.09355 19.743 0 0 0 g 0 0 0 0 20.1155 19.4359 28.5178 1.29267 2.45661 0.49762 0.382361 3.65895 4.70827 21.8194 0 0 0 t 0 0 0 0 28.5453 35.7704 33.4659 75.6947 2.45661 0.812274 98.3575 46.8606 33.0929 23.8742 0 0 0

M06506_2.00_rc_shift7 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06506_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=219/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.454828; -------yAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 5.88235 100 100 0 0 100 64.7059 0 0 0 c 0 0 0 0 0 0 0 41.1765 0 0 0 0 0 11.7647 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 11.7647 0 0 0 t 0 0 0 0 0 0 0 52.9412 0 0 100 100 0 11.7647 0 0 0

M06511_2.00_rc_shift7 (NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06511_2.00_rc (NKX1-1,NKX1-2,OTP,SEBOX_rc); m=220/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.454173; -------YAATTAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 100 100 0 3.57143 96.4286 67.8571 0 0 0 c 0 0 0 0 0 0 0 25 0 0 0 0 0 14.2857 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 14.2857 0 0 0 t 0 0 0 0 0 0 0 75 0 0 100 96.4286 3.57143 3.57143 0 0 0

M06475_2.00_rc_shift7 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06475_2.00_rc (HOXC5,HOXC6_rc); m=221/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.453115; -------TmATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 66.6667 94.4444 0 11.1111 100 77.7778 0 0 0 c 0 0 0 0 0 0 0 11.1111 33.3333 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 5.55556 0 0 0 0 0 16.6667 0 0 0 t 0 0 0 0 0 0 0 83.3333 0 5.55556 100 88.8889 0 5.55556 0 0 0

M00482_2.00_shift7 (OTP,SEBOX)
; positions_6nt_m4 versus M00482_2.00 (OTP,SEBOX); m=222/257; ncol2=7; w=0; offset=1; strand=D; shift=7; score=0.452787; -------wwAttrr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 25.954 45.7205 70.7829 15.3576 17.7229 61.2146 38.1058 0 0 0 c 0 0 0 0 0 0 0 15.1246 9.13897 0.034722 7.40097 10.328 0.351476 17.8208 0 0 0 g 0 0 0 0 0 0 0 19.4204 19.5416 14.0078 16.8039 22.3061 31.0124 27.9486 0 0 0 t 0 0 0 0 0 0 0 39.501 25.5989 15.1745 60.4375 49.643 7.42154 16.1249 0 0 0

M06332_2.00_rc_shift7 (SEBOX_rc)
; positions_6nt_m4 versus M06332_2.00_rc (SEBOX_rc); m=223/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.451845; -------TAATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 100 100 0 0 100 88.8889 0 0 0 c 0 0 0 0 0 0 0 5.55556 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 11.1111 0 0 0 t 0 0 0 0 0 0 0 94.4444 0 0 100 100 0 0 0 0 0

M06529_2.00_rc_shift7 (SEBOX_rc)
; positions_6nt_m4 versus M06529_2.00_rc (SEBOX_rc); m=224/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.451845; -------TAATTAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 100 100 0 0 100 88.8889 0 0 0 c 0 0 0 0 0 0 0 5.55556 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 11.1111 0 0 0 t 0 0 0 0 0 0 0 94.4444 0 0 100 100 0 0 0 0 0

M06507_2.00_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1)
; positions_6nt_m4 versus M06507_2.00 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1); m=225/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.45152; ------yTAATkA---- ; cor=; Ncor= a 0 0 0 0 0 0 11.6279 6.97674 100 97.6744 2.32558 11.6279 79.0698 0 0 0 0 c 0 0 0 0 0 0 34.8837 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 13.9535 0 0 0 2.32558 37.2093 20.9302 0 0 0 0 t 0 0 0 0 0 0 39.5349 93.0233 0 2.32558 95.3488 51.1628 0 0 0 0 0

M00519_2.00_rc_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M00519_2.00_rc (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=226/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.450669; ------syaatya---- ; cor=; Ncor= a 0 0 0 0 0 0 19.6336 15.3106 47.5416 66.3215 24.4429 16.229 50.7267 0 0 0 0 c 0 0 0 0 0 0 30.182 32.4125 14.7553 12.6103 11.6621 26.4909 9.83997 0 0 0 0 g 0 0 0 0 0 0 25.7194 16.0956 16.9727 12.8651 10.0376 16.5569 19.6181 0 0 0 0 t 0 0 0 0 0 0 24.465 36.1814 20.7305 8.20312 53.8574 40.7233 19.8153 0 0 0 0

M06294_2.00_shift6 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1)
; positions_6nt_m4 versus M06294_2.00 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1); m=227/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.450604; ------yTAATkr---- ; cor=; Ncor= a 0 0 0 0 0 0 12.5135 10.2384 93.8245 98.8353 6.44637 18.8787 59.7779 0 0 0 0 c 0 0 0 0 0 0 34.7508 2.13976 0 0 1.54388 5.57963 2.54605 0 0 0 0 g 0 0 0 0 0 0 12.6219 0 3.49404 1.16468 3.3857 29.0087 29.415 0 0 0 0 t 0 0 0 0 0 0 40.1138 87.6219 2.68147 0 88.6241 46.533 8.26111 0 0 0 0

M06364_2.00_rc_shift6 (HOXC5,HOXC6,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06364_2.00_rc (HOXC5,HOXC6,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=228/257; ncol2=7; w=0; offset=0; strand=R; shift=6; score=0.44789; ------bTAATTA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 21.7391 100 78.2609 0 13.0435 82.6087 0 0 0 0 c 0 0 0 0 0 0 26.087 0 0 0 4.34783 0 13.0435 0 0 0 0 g 0 0 0 0 0 0 43.4783 0 0 0 0 13.0435 4.34783 0 0 0 0 t 0 0 0 0 0 0 30.4348 78.2609 0 21.7391 95.6522 73.913 0 0 0 0 0

M00148_2.00_rc_shift3 (M00148_2.00_rc)
; positions_6nt_m4 versus M00148_2.00_rc; m=229/257; ncol2=10; w=-3; offset=-3; strand=R; shift=3; score=0.44743; ---yarhmAAyAA---- ; cor=; Ncor= a 0 0 0 18.1072 41.8948 40.2973 30.426 47.5931 81.4425 68.6845 16.077 82.2741 81.4196 0 0 0 0 c 0 0 0 32.0184 18.6372 14.1015 26.7169 30.3467 4.34879 11.1287 38.7601 1.64882 2.36225 0 0 0 0 g 0 0 0 24.6878 22.0908 25.1859 8.89328 8.69448 9.20639 7.7642 13.4287 12.062 5.4174 0 0 0 0 t 0 0 0 25.1866 17.3772 20.4153 33.9638 13.3657 5.0023 12.4227 31.7341 4.01508 10.8008 0 0 0 0

M06525_2.00_rc_shift7 (NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M06525_2.00_rc (NKX1-1,NKX1-2,OTP,SEBOX_rc); m=230/257; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.447199; -------tAATTAr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 23.5294 88.2353 100 0 5.88235 100 41.1765 0 0 0 c 0 0 0 0 0 0 0 23.5294 5.88235 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 5.88235 0 0 0 0 0 35.2941 0 0 0 t 0 0 0 0 0 0 0 47.0588 5.88235 0 100 94.1176 0 23.5294 0 0 0

M02651_2.00_shift9 (ARID3B,ARID3C)
; positions_6nt_m4 versus M02651_2.00 (ARID3B,ARID3C); m=231/257; ncol2=6; w=0; offset=3; strand=D; shift=9; score=0.446761; ---------ATyAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 100 0 3.7037 100 100 74.0741 0 0 c 0 0 0 0 0 0 0 0 0 0 0 33.3333 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.7037 0 0 t 0 0 0 0 0 0 0 0 0 0 100 62.963 0 0 22.2222 0 0

M10527_2.00_shift3 (FOXI2,FOXI3,FOXJ2)
; positions_6nt_m4 versus M10527_2.00 (FOXI2,FOXI3,FOXJ2); m=232/257; ncol2=18; w=-3; offset=-3; strand=D; shift=3; score=0.446265; ---wwawAaAyAAAyAw ; cor=; Ncor= a 0 0 0 34.1463 34.1463 34.1463 36.5854 68.2927 63.4146 78.0488 0 100 100 100 0 97.561 29.2683 c 0 0 0 24.3902 21.9512 24.3902 17.0732 24.3902 7.31707 0 36.5854 0 0 0 65.8537 0 21.9512 g 0 0 0 4.87805 7.31707 19.5122 7.31707 7.31707 17.0732 21.9512 0 0 0 0 0 2.43902 14.6341 t 0 0 0 36.5854 36.5854 21.9512 39.0244 0 12.1951 0 63.4146 0 0 0 34.1463 0 34.1463

M00361_2.00_rc_shift5 (POU4F3_rc)
; positions_6nt_m4 versus M00361_2.00_rc (POU4F3_rc); m=233/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.446262; -----atkmATrw---- ; cor=; Ncor= a 0 0 0 0 0 42.8829 12.714 23.6573 57.8922 79.6941 3.97347 44.7848 39.3188 0 0 0 0 c 0 0 0 0 0 17.0897 14.6246 7.41624 25.7538 5.35588 5.92773 5.53931 20.5262 0 0 0 0 g 0 0 0 0 0 16.2562 7.11855 26.6736 6.87975 4.99379 1.8958 27.4364 14.3207 0 0 0 0 t 0 0 0 0 0 23.7712 65.5429 42.2529 9.47429 9.9562 88.203 22.2395 25.8343 0 0 0 0

M06204_2.00_shift6 (M06204_2.00)
; positions_6nt_m4 versus M06204_2.00; m=234/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.446207; ------cwGATAA---- ; cor=; Ncor= a 0 0 0 0 0 0 11.7647 58.8235 0 100 5.88235 100 100 0 0 0 0 c 0 0 0 0 0 0 52.9412 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 17.6471 0 100 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 17.6471 41.1765 0 0 94.1176 0 0 0 0 0 0

M05895_2.00_shift9 (LEF1)
; positions_6nt_m4 versus M05895_2.00 (LEF1); m=235/257; ncol2=10; w=0; offset=3; strand=D; shift=9; score=0.445993; ---------WTCAAAGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 74.3 3.2 4.6 98.4 98.5 96.3 8.8 23.2 c 0 0 0 0 0 0 0 0 0 0.3 0.5 84.9 0.2 0.5 0.6 12.9 18.9 g 0 0 0 0 0 0 0 0 0 0.3 0.2 8.7 0.2 0.4 1.8 77.3 44.6 t 0 0 0 0 0 0 0 0 0 25 96.2 1.8 1.2 0.6 1.3 0.9 13.4

M00347_2.00_shift6 (PAX4)
; positions_6nt_m4 versus M00347_2.00 (PAX4); m=236/257; ncol2=7; w=0; offset=0; strand=D; shift=6; score=0.445848; ------ydwATta---- ; cor=; Ncor= a 0 0 0 0 0 0 16.2331 25.0261 37.3787 77.9241 1.41154 18.342 54.5851 0 0 0 0 c 0 0 0 0 0 0 37.2277 19.2964 20.3098 1.25324 14.5077 14.8677 11.9384 0 0 0 0 g 0 0 0 0 0 0 15.7534 29.3684 14.8961 15.8907 8.53932 16.9318 13.194 0 0 0 0 t 0 0 0 0 0 0 30.7858 26.3092 27.4153 4.93195 75.5414 49.8586 20.2825 0 0 0 0

M06359_2.00_shift5 (HHEX)
; positions_6nt_m4 versus M06359_2.00 (HHEX); m=237/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.439075; -----tybAATwR---- ; cor=; Ncor= a 0 0 0 0 0 20.6564 5.79151 2.12355 80.1158 100 0.675676 27.2201 72.2973 0 0 0 0 c 0 0 0 0 0 17.8571 34.0734 29.7297 0 0 13.417 1.35135 0 0 0 0 0 g 0 0 0 0 0 13.9961 2.79923 28.668 13.61 0 11.7761 15.8301 27.7027 0 0 0 0 t 0 0 0 0 0 47.4903 57.3359 39.4788 6.27413 0 74.1313 55.5985 0 0 0 0 0

M00162_2.00_shift5 (FOXB2)
; positions_6nt_m4 versus M00162_2.00 (FOXB2); m=238/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.436349; -----GTAAAyAa---- ; cor=; Ncor= a 0 0 0 0 0 16.0144 0.0322165 87.8027 96.8826 99.9092 0.0302663 99.9092 63.0777 0 0 0 0 c 0 0 0 0 0 0.0399361 3.25387 12.1368 3.0569 0.0302663 63.5896 0.0302663 10.5567 0 0 0 0 g 0 0 0 0 0 83.9058 0.0322165 0.0302663 0.0302663 0.0302663 0.0302663 0.0302663 10.5567 0 0 0 0 t 0 0 0 0 0 0.0399361 96.6817 0.0302663 0.0302663 0.0302663 36.3499 0.0302663 15.8088 0 0 0 0

M03127_2.00_rc_shift6 (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M03127_2.00_rc (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=239/257; ncol2=18; w=0; offset=0; strand=R; shift=6; score=0.435004; ------gCAATTAaaww ; cor=; Ncor= a 0 0 0 0 0 0 10.2249 3.28168 89.5645 95.3528 0 6.12366 94.6281 62.6856 61.8812 47.9495 50.4996 c 0 0 0 0 0 0 21.8814 74.1112 4.19063 2.92599 0.0625782 6.06421 0.495868 7.05446 14.1708 8.04416 6.84089 g 0 0 0 0 0 0 50.5112 1.18505 2.95809 1.37694 0 0.237812 2.72727 11.5718 12.0668 11.5142 14.681 t 0 0 0 0 0 0 17.3824 21.4221 3.28677 0.344234 99.9374 87.5743 2.14876 18.6881 11.8812 32.4921 27.9785

M00547_2.00_rc_shift5 (M00547_2.00_rc)
; positions_6nt_m4 versus M00547_2.00_rc; m=240/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.430596; -----aytaATda---- ; cor=; Ncor= a 0 0 0 0 0 33.1331 16.5466 18.8233 53.2506 84.2426 13.5529 28.9054 42.2022 0 0 0 0 c 0 0 0 0 0 23.8202 25.4364 6.7876 22.9889 4.97139 7.51272 10.0144 18.774 0 0 0 0 g 0 0 0 0 0 23.3485 11.203 23.2219 9.53539 8.70328 4.00121 30.3874 16.3213 0 0 0 0 t 0 0 0 0 0 19.6983 46.814 51.1671 14.2251 2.08277 74.9332 30.6928 22.7025 0 0 0 0

M00259_2.00_shift5 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_6nt_m4 versus M00259_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=241/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.424112; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 58.7838 8.70982 78.6777 97.8104 99.9362 0.0212585 99.9348 61.2436 0 0 0 0 c 0 0 0 0 0 0.0293772 6.53779 14.9022 0.0212585 0.0212585 78.6777 0.0217202 9.69716 0 0 0 0 g 0 0 0 0 0 41.1575 0.0217202 0.0212585 0.0212585 0.0212585 0.0212585 0.0217202 12.9188 0 0 0 0 t 0 0 0 0 0 0.0293772 84.7307 6.39881 2.14711 0.0212585 21.2798 0.0217202 16.1405 0 0 0 0

M06358_2.00_shift5 (HHEX)
; positions_6nt_m4 versus M06358_2.00 (HHEX); m=242/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.423776; -----wYkAATWA---- ; cor=; Ncor= a 0 0 0 0 0 26.9231 0 0 80.7692 100 0 26.9231 84.6154 0 0 0 0 c 0 0 0 0 0 11.5385 26.9231 23.0769 0 0 11.5385 0 0 0 0 0 0 g 0 0 0 0 0 7.69231 0 26.9231 7.69231 0 11.5385 3.84615 15.3846 0 0 0 0 t 0 0 0 0 0 53.8462 73.0769 50 11.5385 0 76.9231 69.2308 0 0 0 0 0

M06541_2.00_shift5 (HHEX)
; positions_6nt_m4 versus M06541_2.00 (HHEX); m=243/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.423776; -----wYkAATWA---- ; cor=; Ncor= a 0 0 0 0 0 26.9231 0 0 80.7692 100 0 26.9231 84.6154 0 0 0 0 c 0 0 0 0 0 11.5385 26.9231 23.0769 0 0 11.5385 0 0 0 0 0 0 g 0 0 0 0 0 7.69231 0 26.9231 7.69231 0 11.5385 3.84615 15.3846 0 0 0 0 t 0 0 0 0 0 53.8462 73.0769 50 11.5385 0 76.9231 69.2308 0 0 0 0 0

M00289_2.00_rc_shift5 (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M00289_2.00_rc (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=244/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.421882; -----wyyaATta---- ; cor=; Ncor= a 0 0 0 0 0 29.7327 19.7986 15.2491 62.8435 75.9728 12.3249 15.0667 64.1424 0 0 0 0 c 0 0 0 0 0 20.333 31.3625 45.8107 12.4366 7.6935 6.24401 14.3319 9.035 0 0 0 0 g 0 0 0 0 0 24.3431 21.0229 8.53793 8.59042 6.05192 6.12037 8.26877 12.0746 0 0 0 0 t 0 0 0 0 0 25.5912 27.816 30.4023 16.1295 10.2818 75.3107 62.3327 14.748 0 0 0 0

M08554_2.00_shift5 (M08554_2.00)
; positions_6nt_m4 versus M08554_2.00; m=245/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.420775; -----awmAACAa---- ; cor=; Ncor= a 0 0 0 0 0 51.3075 27.2549 67.0106 94.6809 100 0.7021 95.0104 58.0308 0 0 0 0 c 0 0 0 0 0 16.0895 7.678 31.5845 5.3191 0 85.5953 1.7114 17.0674 0 0 0 0 g 0 0 0 0 0 24.8858 4.1351 0.658101 0 0 0.4388 1.5356 10.8697 0 0 0 0 t 0 0 0 0 0 7.7172 60.932 0.746801 0 0 13.2638 1.7426 14.0321 0 0 0 0

M00429_2.00_rc_shift5 (NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M00429_2.00_rc (NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=246/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.420186; -----rsyaATta---- ; cor=; Ncor= a 0 0 0 0 0 28.3194 20.1707 16.4841 61.0358 82.2257 5.51861 13.5708 66.2289 0 0 0 0 c 0 0 0 0 0 22.0552 31.0075 44.3625 14.3172 8.93046 5.46369 13.1697 7.12149 0 0 0 0 g 0 0 0 0 0 26.6702 25.3868 7.26011 12.4468 4.13492 0.0631732 7.37372 12.5927 0 0 0 0 t 0 0 0 0 0 22.9553 23.435 31.8933 12.2003 4.70896 88.9545 65.8857 14.0569 0 0 0 0

M07473_2.00_shift5 (M07473_2.00)
; positions_6nt_m4 versus M07473_2.00; m=247/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.41934; -----rwmAACAa---- ; cor=; Ncor= a 0 0 0 0 0 51 27 66.3366 95 100 1 94.0594 57.5758 0 0 0 0 c 0 0 0 0 0 16 8 31.6832 5 0 86 1.9802 17.1717 0 0 0 0 g 0 0 0 0 0 25 4 0.990099 0 0 0 1.9802 11.1111 0 0 0 0 t 0 0 0 0 0 8 61 0.990099 0 0 13 1.9802 14.1414 0 0 0 0

M07738_2.00_rc_shift9 (ZNF649_rc)
; positions_6nt_m4 versus M07738_2.00_rc (ZNF649_rc); m=248/257; ncol2=6; w=0; offset=3; strand=R; shift=9; score=0.417692; ---------ATATAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 99.8454 0.0515464 99.8454 0.0515464 99.8454 99.8454 0 0 c 0 0 0 0 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 g 0 0 0 0 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 t 0 0 0 0 0 0 0 0 0 0.0515464 99.8454 0.0515464 99.8454 0.0515464 0.0515464 0 0

M10526_2.00_rc_shift0 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1_rc)
; positions_6nt_m4 versus M10526_2.00_rc (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1_rc); m=249/257; ncol2=16; w=-6; offset=-6; strand=R; shift=0; score=0.416956; vshvwGTAAAYAAASA- ; cor=; Ncor= a 25 12.5 25 37.5 43.75 0 0 100 100 100 0 100 87.5 75 0 68.75 0 c 25 31.25 25 25 18.75 0 0 0 0 0 25 0 6.25 0 68.75 12.5 0 g 31.25 37.5 18.75 31.25 12.5 100 0 0 0 0 0 0 0 12.5 25 18.75 0 t 18.75 18.75 31.25 6.25 25 0 100 0 0 0 75 0 6.25 12.5 6.25 0 0

M00290_2.00_rc_shift5 (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M00290_2.00_rc (MSX2,NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=250/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.416731; -----rsyaATta---- ; cor=; Ncor= a 0 0 0 0 0 26.8839 20.3135 15.6585 57.6395 76.0153 5.23414 14.3973 64.534 0 0 0 0 c 0 0 0 0 0 22.681 30.0026 44.3012 15.3975 11.0335 5.5025 14.6882 6.93924 0 0 0 0 g 0 0 0 0 0 26.3516 26.083 8.50804 12.6064 6.0553 0.568475 7.66789 12.7712 0 0 0 0 t 0 0 0 0 0 24.0835 23.6009 31.5323 14.3566 6.89595 88.6949 63.2466 15.7555 0 0 0 0

M06293_2.00_shift5 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1)
; positions_6nt_m4 versus M06293_2.00 (HOXC5,NKX1-1,NKX1-2,OTP,SEBOX,TLX1); m=251/257; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.413893; -----dyTAATkA---- ; cor=; Ncor= a 0 0 0 0 0 25.5814 11.6279 6.97674 100 97.6744 2.32558 11.6279 79.0698 0 0 0 0 c 0 0 0 0 0 20.9302 34.8837 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 27.907 13.9535 0 0 0 2.32558 37.2093 20.9302 0 0 0 0 t 0 0 0 0 0 25.5814 39.5349 93.0233 0 2.32558 95.3488 51.1628 0 0 0 0 0

M00555_2.00_rc_shift5 (NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc)
; positions_6nt_m4 versus M00555_2.00_rc (NANOGP8,NKX1-1,NKX1-2,OTP,SEBOX_rc); m=252/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.413371; -----rsyAATTA---- ; cor=; Ncor= a 0 0 0 0 0 30.3652 18.4943 10.4504 75.8561 89.2749 2.70579 8.77907 79.4948 0 0 0 0 c 0 0 0 0 0 20.9743 32.7028 50.7361 9.57196 5.16404 2.12845 7.4066 3.27295 0 0 0 0 g 0 0 0 0 0 27.4755 27.3157 3.76835 6.81304 2.09954 0.0213949 4.58308 6.99847 0 0 0 0 t 0 0 0 0 0 21.1851 21.4873 35.0452 7.75888 3.46156 95.1444 79.2313 10.2338 0 0 0 0

M06248_2.00_rc_shift5 (HOXC5,HOXC6_rc)
; positions_6nt_m4 versus M06248_2.00_rc (HOXC5,HOXC6_rc); m=253/257; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.411763; -----rgcmATTA---- ; cor=; Ncor= a 0 0 0 0 0 28.7879 24.2424 10.6061 59.0909 84.8485 9.09091 16.6667 81.8182 0 0 0 0 c 0 0 0 0 0 6.06061 21.2121 60.6061 37.8788 13.6364 0 10.6061 4.54545 0 0 0 0 g 0 0 0 0 0 46.9697 33.3333 9.09091 0 0 0 3.0303 4.54545 0 0 0 0 t 0 0 0 0 0 18.1818 21.2121 19.697 3.0303 1.51515 90.9091 69.697 9.09091 0 0 0 0

M07485_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M07485_2.00_rc (OTP,SEBOX_rc); m=254/257; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.407065; -------wAwTAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 37 77 44 0 88 40.5941 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 7.92079 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 63 23 56 100 12 51.4851 0 0 0 0

M08572_2.00_rc_shift7 (OTP,SEBOX_rc)
; positions_6nt_m4 versus M08572_2.00_rc (OTP,SEBOX_rc); m=255/257; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.406531; -------wAwTAw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.9531 76.9531 43.5156 0.078125 88.2031 40.7031 0 0 0 0 c 0 0 0 0 0 0 0 0.078125 0.078125 0.078125 0.078125 0.078125 7.57812 0 0 0 0 g 0 0 0 0 0 0 0 0.078125 0.078125 0.078125 0.078125 0.078125 0.078125 0 0 0 0 t 0 0 0 0 0 0 0 62.8906 22.8906 56.3281 99.7656 11.6406 51.6406 0 0 0 0

M00665_2.00_shift3 (FOXB2)
; positions_6nt_m4 versus M00665_2.00 (FOXB2); m=256/257; ncol2=11; w=-3; offset=-3; strand=D; shift=3; score=0.403756; ---rtgTAAAyAaa--- ; cor=; Ncor= a 0 0 0 29.029 24.337 21.5478 15.1281 91.9668 92.297 99.9637 0.0121055 88.268 50.8155 42.9714 0 0 0 c 0 0 0 21.1015 8.61728 6.00257 7.62986 8.009 7.67878 0.0121055 66.8017 3.91065 16.3948 19.0095 0 0 0 g 0 0 0 28.7681 8.61728 66.447 0.0121055 0.0121055 0.0121055 0.0121055 0.0121055 3.91065 16.3948 19.0095 0 0 0 t 0 0 0 21.1015 58.4284 6.00257 77.2299 0.0121055 0.0121055 0.0121055 33.1741 3.91065 16.3948 19.0095 0 0 0

M08236_2.00_rc_shift11 (MZF1_rc)
; positions_6nt_m4 versus M08236_2.00_rc (MZF1_rc); m=257/257; ncol2=7; w=0; offset=5; strand=R; shift=11; score=0.401248; -----------AAAATG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 100 100 100 100 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0