/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf
		file1	1	12	19070
	file2	6607 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
		file2		1		7		100.0001
		file2		2		9		100.0001
		file2		3		8		100.00002892
		file2		4		9		100.0001
		file2		5		10		100.0001
		file2		6		11		100.00004702
		file2		7		10		100.00006
		file2		8		10		100.00005411
		file2		9		10		100.000031
		file2		10		10		100.0001
		file2		11		9		100
		...	6597 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m2 M00332_2.00 positions_7nt_m2 HOXB7,HOXC5,HOXC6 0.907 0.756 12 10 10 12 0.8333 0.8333 1.0000 D 0
positions_7nt_m2 M00255_2.00 positions_7nt_m2 FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1 0.744 0.744 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 M00786_2.00 positions_7nt_m2 M00786_2.00 0.969 0.727 12 9 9 12 0.7500 0.7500 1.0000 R 1
positions_7nt_m2 M00333_2.00 positions_7nt_m2 HOXB7,HOXC5,HOXC6 0.827 0.689 12 10 10 12 0.8333 0.8333 1.0000 R 1
positions_7nt_m2 M00308_2.00 positions_7nt_m2 HESX1,NKX1-1,NKX1-2,OTP,SEBOX 0.910 0.683 12 9 9 12 0.7500 0.7500 1.0000 D 2
positions_7nt_m2 M00304_2.00 positions_7nt_m2 HOXC5,NANOGP8,NKX1-1,NKX1-2,VENTX 0.902 0.677 12 9 9 12 0.7500 0.7500 1.0000 D 0
positions_7nt_m2 M01693_2.00 positions_7nt_m2 M01693_2.00 0.753 0.628 12 10 10 12 0.8333 0.8333 1.0000 R 1
positions_7nt_m2 M01672_2.00 positions_7nt_m2 M01672_2.00 0.725 0.604 12 10 10 12 0.8333 0.8333 1.0000 D 2
positions_7nt_m2 M00371_2.00 positions_7nt_m2 NR2E3 0.756 0.594 12 13 11 14 0.7857 0.9167 0.8462 D -2
positions_7nt_m2 M08214_2.00 positions_7nt_m2 BORCS8-MEF2B 0.707 0.589 12 10 10 12 0.8333 0.8333 1.0000 D 1
positions_7nt_m2 M08609_2.00 positions_7nt_m2 TBPL2 0.911 0.521 12 21 12 21 0.5714 1.0000 0.5714 D -4
positions_7nt_m2 M00244_2.00 positions_7nt_m2 WT1 0.717 0.512 12 12 10 14 0.7143 0.8333 0.8333 D -2
positions_7nt_m2 M04857_2.00 positions_7nt_m2 FOXR2 0.720 0.508 12 17 12 17 0.7059 1.0000 0.7059 D -1
positions_7nt_m2 M00216_2.00 positions_7nt_m2 TBPL2 0.865 0.504 12 7 7 12 0.5833 0.5833 1.0000 D 0
positions_7nt_m2 M01679_2.00 positions_7nt_m2 M01679_2.00 0.755 0.503 12 8 8 12 0.6667 0.6667 1.0000 D 1
positions_7nt_m2 M09432_2.00 positions_7nt_m2 TBP,TBPL2 0.713 0.494 12 10 9 13 0.6923 0.7500 0.9000 R -1
positions_7nt_m2 M11491_2.00 positions_7nt_m2 M11491_2.00 0.710 0.488 12 15 11 16 0.6875 0.9167 0.7333 D 1
positions_7nt_m2 M11388_2.00 positions_7nt_m2 TBP,TBPL2 0.710 0.488 12 15 11 16 0.6875 0.9167 0.7333 D 1
positions_7nt_m2 M00247_2.00 positions_7nt_m2 WT1 0.757 0.487 12 11 9 14 0.6429 0.7500 0.8182 R -2
positions_7nt_m2 M01567_2.00 positions_7nt_m2 TBPL2 0.833 0.486 12 7 7 12 0.5833 0.5833 1.0000 D 0
positions_7nt_m2 M11390_2.00 positions_7nt_m2 TBP,TBPL2 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 D 2
positions_7nt_m2 M00248_2.00 positions_7nt_m2 WT1 0.723 0.482 12 13 10 15 0.6667 0.8333 0.7692 D -3
positions_7nt_m2 M07738_2.00 positions_7nt_m2 ZNF649 0.885 0.443 12 6 6 12 0.5000 0.5000 1.0000 D 1
positions_7nt_m2 M08377_2.00 positions_7nt_m2 ZSCAN16 0.883 0.441 12 24 12 24 0.5000 1.0000 0.5000 R -1 
 Host name	rsat
 Job started	2026-01-04.221053
 Job done	2026-01-04.221100
 Seconds	2.75
	user	2.75
	system	0.53
	cuser	3.43
;	csystem	0.67