One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_cisBP_Homo_sapiens

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift4 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift4 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=12; shift=4; ncol=16; ----waTATATATAtw ; Alignment reference a 0 0 0 0 5022 8469 1770 14881 1412 15210 1453 15086 1281 14491 4068 7749 c 0 0 0 0 3357 2455 1876 777 1881 658 1753 691 2138 933 4078 2943 g 0 0 0 0 2940 4070 934 2131 697 1748 660 1880 779 1876 2453 3355 t 0 0 0 0 7751 4076 14490 1281 15080 1454 15204 1413 14872 1770 8471 5023

M00332_2.00_shift4 (HOXB7,HOXC5,HOXC6)
; positions_7nt_m2 versus M00332_2.00 (HOXB7,HOXC5,HOXC6); m=1/24; ncol2=10; w=0; offset=0; strand=D; shift=4; score=0.755701; ----atWATATAya-- ; cor=; Ncor= a 0 0 0 0 32.1579 19.9591 29.1262 99.917 9.90596 79.5937 10.4727 80.8041 11.9766 45.7153 0 0 c 0 0 0 0 22.614 10.1889 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 32.0521 14.8387 0 0 g 0 0 0 0 22.614 20.0672 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 9.57764 2.41363 14.8387 0 0 t 0 0 0 0 22.614 49.7848 70.8184 0.0276595 90.0387 20.351 89.472 9.59064 53.5576 24.6072 0 0

M00255_2.00_shift4 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)
; positions_7nt_m2 versus M00255_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=2/24; ncol2=12; w=0; offset=0; strand=D; shift=4; score=0.743584; ----wrTATATwatrc ; cor=; Ncor= a 0 0 0 0 31.2198 43.2921 5.14749 82.9897 0.0360027 80.6356 9.64692 48.0179 55.4481 22.2678 29.6103 22.5695 c 0 0 0 0 19.7177 12.49 5.14749 2.46645 9.79381 0.0360027 9.47987 0.0360027 14.9292 12.546 19.8885 32.2914 g 0 0 0 0 19.7177 31.728 5.14749 2.46645 9.66312 9.57816 0.0360027 0.0360027 5.31832 12.546 30.6126 22.5695 t 0 0 0 0 29.3448 12.49 84.5575 12.0774 80.5071 9.75025 80.8372 51.9101 24.3043 52.6401 19.8885 22.5695

M00786_2.00_rc_shift5 (M00786_2.00_rc)
; positions_7nt_m2 versus M00786_2.00_rc; m=3/24; ncol2=9; w=0; offset=1; strand=R; shift=5; score=0.72694; -----ayatayata-- ; cor=; Ncor= a 0 0 0 0 0 50 12.5 62.5 12.5 62.5 12.5 62.5 12.5 50 0 0 c 0 0 0 0 0 16.6667 25 12.5 12.5 12.5 25 12.5 12.5 16.6667 0 0 g 0 0 0 0 0 16.6667 12.5 12.5 12.5 12.5 12.5 12.5 12.5 16.6667 0 0 t 0 0 0 0 0 16.6667 50 12.5 62.5 12.5 50 12.5 62.5 16.6667 0 0

M00333_2.00_rc_shift5 (HOXB7,HOXC5,HOXC6_rc)
; positions_7nt_m2 versus M00333_2.00_rc (HOXB7,HOXC5,HOXC6_rc); m=4/24; ncol2=10; w=0; offset=1; strand=R; shift=5; score=0.689427; -----wAATATATat- ; cor=; Ncor= a 0 0 0 0 0 37.9552 82.165 80.3235 9.83457 79.4955 20.1694 99.915 0.0283262 57.2618 22.5353 0 c 0 0 0 0 0 17.3895 2.49306 0.0283262 0.0283262 0.0283262 9.88726 0.0283262 0.0283262 7.6388 22.5353 0 g 0 0 0 0 0 17.3895 2.49306 0.0283262 0.0283262 10.0921 0.0283262 0.0283262 0.0283262 17.4351 22.5353 0 t 0 0 0 0 0 27.2657 12.8488 19.6199 90.1088 10.3841 69.915 0.0283262 99.915 17.6643 32.3942 0

M00308_2.00_shift6 (HESX1,NKX1-1,NKX1-2,OTP,SEBOX)
; positions_7nt_m2 versus M00308_2.00 (HESX1,NKX1-1,NKX1-2,OTP,SEBOX); m=5/24; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.682615; ------yATAtATar- ; cor=; Ncor= a 0 0 0 0 0 0 14.4198 90.4175 9.52605 99.9154 19.4162 99.9154 9.52605 61.2864 29.1397 0 c 0 0 0 0 0 0 34.7792 0.0281994 18.3564 0.0281994 19.8662 0.0281994 9.46571 9.19273 20.6297 0 g 0 0 0 0 0 0 14.4198 9.52605 0.0281994 0.0281994 0.0281994 0.0281994 0.0281994 20.1259 29.2821 0 t 0 0 0 0 0 0 36.3812 0.0281994 72.0893 0.0281994 60.6894 0.0281994 80.98 9.39492 20.9486 0

M00304_2.00_shift4 (HOXC5,NANOGP8,NKX1-1,NKX1-2,VENTX)
; positions_7nt_m2 versus M00304_2.00 (HOXC5,NANOGP8,NKX1-1,NKX1-2,VENTX); m=6/24; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.676802; ----aATAYATAy--- ; cor=; Ncor= a 0 0 0 0 40.0565 89.4224 0.0269769 99.9191 0.0269769 80.0595 0.0269769 89.9711 5.04582 0 0 0 c 0 0 0 0 19.9812 0.0269769 19.5574 0.0269769 30.9856 0.0269769 0.0269769 0.0269769 33.7592 0 0 0 g 0 0 0 0 19.9812 10.5237 0.0269769 0.0269769 0.0269769 19.8865 0.0269769 9.97497 14.9938 0 0 0 t 0 0 0 0 19.9812 0.0269769 80.3886 0.0269769 68.9604 0.0269769 99.9191 0.0269769 46.2012 0 0 0

M01693_2.00_rc_shift5 (M01693_2.00_rc)
; positions_7nt_m2 versus M01693_2.00_rc; m=7/24; ncol2=10; w=0; offset=1; strand=R; shift=5; score= 0.6278; -----rtAWWTATwt- ; cor=; Ncor= a 0 0 0 0 0 30.2779 23.9593 90.6185 73.2217 70.8945 10.9675 76.7638 10.28 26.0727 10.0113 0 c 0 0 0 0 0 20.3034 15.0083 0.0196195 0.0196195 0.0196195 0.0196195 0.0196195 8.83145 4.7162 19.3339 0 g 0 0 0 0 0 29.1152 15.0083 9.34227 0.0196195 0.0196195 0.0196195 0.0196195 0.0196195 13.3577 10.0113 0 t 0 0 0 0 0 20.3034 46.0241 0.0196195 26.7391 29.0663 88.9933 23.1969 80.869 55.8535 60.6435 0

M01672_2.00_shift6 (M01672_2.00)
; positions_7nt_m2 versus M01672_2.00; m=8/24; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.603812; ------tAWWTAWWta ; cor=; Ncor= a 0 0 0 0 0 0 24.811 83.1954 29.2968 70.1933 0.0230425 80.2506 68.6996 29.7562 21.3125 32.2088 c 0 0 0 0 0 0 15.2843 2.42597 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 9.73873 22.5971 g 0 0 0 0 0 0 24.824 2.42597 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 9.73873 22.5971 t 0 0 0 0 0 0 35.0807 11.9527 70.6571 29.7606 99.9309 19.7033 31.2544 70.1978 59.21 22.5971

M00371_2.00_shift2 (NR2E3)
; positions_7nt_m2 versus M00371_2.00 (NR2E3); m=9/24; ncol2=13; w=-2; offset=-2; strand=D; shift=2; score=0.594005; --actyAATaTATwc- ; cor=; Ncor= a 0 0 31.9047 22.6984 20.1188 17.9334 71.3816 69.6422 0.0160035 60.2687 22.3089 70.4617 4.89718 39.5138 21.6113 0 c 0 0 22.6984 31.9047 20.1188 27.6124 12.7782 9.22231 0.0160035 9.22231 2.31758 2.31758 18.4519 16.9283 35.1661 0 g 0 0 22.6984 22.6984 20.1188 8.08775 3.4047 10.8011 0.0160035 10.3344 2.31758 24.9031 4.89718 16.9283 21.6113 0 t 0 0 22.6984 22.6984 39.6435 46.3664 12.4354 10.3344 99.952 20.1746 73.0559 2.31758 71.7537 26.6297 21.6113 0

M08214_2.00_shift5 (BORCS8-MEF2B)
; positions_7nt_m2 versus M08214_2.00 (BORCS8-MEF2B); m=10/24; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.589152; -----yTAwwwwTAr- ; cor=; Ncor= a 0 0 0 0 0 0 0 100 50 50 50 50 0 100 50 0 c 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 t 0 0 0 0 0 50 100 0 50 50 50 50 100 0 0 0

M08609_2.00_shift0 (TBPL2)
; positions_7nt_m2 versus M08609_2.00 (TBPL2); m=11/24; ncol2=21; w=-4; offset=-4; strand=D; shift=0; score=0.520851; mwyswaTATATATwyC ; cor=; Ncor= a 28.6371 30.1021 12.1658 11.2231 48.3248 65.7135 8.11767 94.7483 2.07983 95.4667 1.20064 95.5608 5.90851 52.9666 24.7765 8.44102 c 27.0884 17.2576 38.3999 36.9687 12.9197 9.43762 2.49132 0.331348 0.601918 0.517672 0.438967 2.38488 2.59269 2.73321 26.6325 70.1617 g 19.3837 17.6397 22.8247 38.0802 12.2748 6.21646 1.00752 0.4462 0.225342 0.186526 0.241747 0.785493 0.791603 11.0816 19.8825 9.86462 t 24.8908 35.0006 26.6096 13.728 26.4806 18.6324 88.3835 4.47411 97.0929 3.82915 98.1186 1.26885 90.7072 33.2186 28.7085 11.5326

M00244_2.00_shift2 (WT1)
; positions_7nt_m2 versus M00244_2.00 (WT1); m=12/24; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.511894; --ttrwAAwATATw-- ; cor=; Ncor= a 0 0 22.5016 22.5016 30.0968 47.5232 89.9424 69.8156 30.2988 79.7833 12.4045 92.3885 5.06892 37.5588 0 0 c 0 0 22.5016 22.5016 19.9698 7.51413 9.98008 20.1718 9.90604 0.0387606 12.4095 2.53717 5.06892 17.5246 0 0 g 0 0 22.5016 22.5016 29.9635 7.51413 0.0387606 0.0387606 0.0387606 0.0387606 2.53717 2.53717 5.06892 17.5246 0 0 t 0 0 32.4952 32.4952 19.9698 37.4485 0.0387606 9.97388 59.7564 20.1392 72.6489 2.53717 84.7933 27.3919 0 0

M04857_2.00_shift3 (FOXR2)
; positions_7nt_m2 versus M04857_2.00 (FOXR2); m=13/24; ncol2=17; w=-1; offset=-1; strand=D; shift=3; score=0.507998; ---ayrTAwACATAAA ; cor=; Ncor= a 0 0 0 61.0519 10.0686 65.5193 1.72414 99.8007 56.0563 89.6181 0.060024 98.6211 0.462963 99.4702 72.0384 99.2074 c 0 0 0 6.65779 36.1556 8.21256 17.2414 0.13289 1.69014 0.0596659 90.1561 0.722259 0.0661376 0.0662252 6.09113 0.264201 g 0 0 0 23.3688 4.00458 25.1812 0.107759 0.0664452 13.7465 10.0239 0 0.328299 0.132275 0.0662252 4.22062 0.264201 t 0 0 0 8.92144 49.7712 1.08696 80.9267 0 28.507 0.298329 9.78391 0.328299 99.3386 0.397351 17.6499 0.264201

M00216_2.00_shift4 (TBPL2)
; positions_7nt_m2 versus M00216_2.00 (TBPL2); m=14/24; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.504397; ----wwtwwAw----- ; cor=; Ncor= a 0 0 0 0 31.7192 37.7028 23.8466 53.2428 29.0314 71.578 28.9234 0 0 0 0 0 c 0 0 0 0 18.8577 11.0202 12.3251 0.0769087 0.0533106 7.85215 11.9969 0 0 0 0 0 g 0 0 0 0 17.0632 11.2429 12.3251 9.53399 6.94748 19.121 10.4296 0 0 0 0 0 t 0 0 0 0 32.36 40.0342 51.5031 37.1463 63.9678 1.44887 48.65 0 0 0 0 0

M01679_2.00_shift5 (M01679_2.00)
; positions_7nt_m2 versus M01679_2.00; m=15/24; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.503296; -----WWAwAwAT--- ; cor=; Ncor= a 0 0 0 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 0 0 c 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 g 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 t 0 0 0 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0 0 0

M09432_2.00_rc_shift3 (TBP,TBPL2_rc)
; positions_7nt_m2 versus M09432_2.00_rc (TBP,TBPL2_rc); m=16/24; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.493761; ---sytTTTATAk--- ; cor=; Ncor= a 0 0 0 4.69799 7.38255 24.1611 1.34228 22.8188 4.02685 86.5772 14.094 77.8523 2.01342 0 0 0 c 0 0 0 57.047 49.6644 15.4362 19.4631 2.68456 4.02685 4.02685 4.69799 8.72483 15.4362 0 0 0 g 0 0 0 30.8725 3.3557 0.671141 2.01342 3.3557 6.04027 4.69799 0 8.72483 54.3624 0 0 0 t 0 0 0 7.38255 39.5973 59.7315 77.1812 71.1409 85.906 4.69799 81.2081 4.69799 28.1879 0 0 0

M11491_2.00_shift5 (M11491_2.00)
; positions_7nt_m2 versus M11491_2.00; m=17/24; ncol2=15; w=0; offset=1; strand=D; shift=5; score=0.488157; -----sTATAWAwrss ; cor=; Ncor= a 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 21.3368 c 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 37.7892 g 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 32.9049 t 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393 7.96915

M11388_2.00_shift5 (TBP,TBPL2)
; positions_7nt_m2 versus M11388_2.00 (TBP,TBPL2); m=18/24; ncol2=15; w=0; offset=1; strand=D; shift=5; score=0.488157; -----sTATAWAwrss ; cor=; Ncor= a 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 21.3368 c 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 37.7892 g 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 32.9049 t 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393 7.96915

M00247_2.00_rc_shift2 (WT1_rc)
; positions_7nt_m2 versus M00247_2.00_rc (WT1_rc); m=19/24; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.486817; --aaaTaATATAt--- ; cor=; Ncor= a 0 0 32.4394 32.4394 52.5515 9.76394 60.642 90.0965 20.4433 99.8824 12.5045 72.436 22.2542 0 0 0 c 0 0 22.5202 22.5202 12.5098 9.86274 19.5498 0.0392063 0.0392063 0.0392063 12.9989 2.51901 12.5295 0 0 0 g 0 0 22.5202 22.5202 12.5098 0.0392063 0.0392063 0.0392063 0.0392063 0.0392063 2.51901 2.51901 12.5295 0 0 0 t 0 0 22.5202 22.5202 22.4289 80.3341 19.769 9.8251 79.4782 0.0392063 71.9777 22.526 52.6869 0 0 0

M01567_2.00_shift4 (TBPL2)
; positions_7nt_m2 versus M01567_2.00 (TBPL2); m=20/24; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.486009; ----wwwwtAw----- ; cor=; Ncor= a 0 0 0 0 31.5311 34.5705 27.1982 58.3542 21.9565 93.4996 42.2777 0 0 0 0 0 c 0 0 0 0 18.9343 14.1966 11.058 0.086859 0.643432 0.0353646 0.0470878 0 0 0 0 0 g 0 0 0 0 20.7174 21.1788 15.5359 11.0954 18.8981 5.19636 9.52823 0 0 0 0 0 t 0 0 0 0 28.8172 30.0541 46.2079 30.4636 58.502 1.26866 48.147 0 0 0 0 0

M11390_2.00_shift6 (TBP,TBPL2)
; positions_7nt_m2 versus M11390_2.00 (TBP,TBPL2); m=21/24; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.485752; ------tATAAATw-- ; cor=; Ncor= a 0 0 0 0 0 0 6.38298 72.3404 0 100 100 85.1064 6.38298 44.6809 0 0 c 0 0 0 0 0 0 8.51064 0 0 0 0 2.12766 6.38298 8.51064 0 0 g 0 0 0 0 0 0 19.1489 12.766 0 0 0 8.51064 12.766 8.51064 0 0 t 0 0 0 0 0 0 65.9574 14.8936 100 0 0 4.25532 74.4681 38.2979 0 0

M00248_2.00_shift1 (WT1)
; positions_7nt_m2 versus M00248_2.00 (WT1); m=22/24; ncol2=13; w=-3; offset=-3; strand=D; shift=1; score=0.48182; -aaTaTTATATkta-- ; cor=; Ncor= a 0 32.4631 39.6939 9.99275 65.2095 22.5183 0.0408538 69.7375 0.0408538 82.7733 4.93882 15.0481 19.9776 32.2609 0 0 c 0 22.5123 20.102 9.99275 14.9523 2.46114 0.0408538 0.0408538 10.3863 2.52855 4.93882 15.0481 19.9776 22.5797 0 0 g 0 22.5123 20.102 9.99275 5.06322 2.46114 0.0408538 9.68195 0.0408538 2.52855 4.93882 44.8494 19.9776 22.5797 0 0 t 0 22.5123 20.102 70.0218 14.775 72.5594 99.8774 20.5397 89.532 12.1696 85.1835 25.0544 40.0671 22.5797 0 0

M07738_2.00_shift5 (ZNF649)
; positions_7nt_m2 versus M07738_2.00 (ZNF649); m=23/24; ncol2=6; w=0; offset=1; strand=D; shift=5; score=0.44268; -----TTATAT----- ; cor=; Ncor= a 0 0 0 0 0 0.0515464 0.0515464 99.8454 0.0515464 99.8454 0.0515464 0 0 0 0 0 c 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 0 0 0 g 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 0 0 0 t 0 0 0 0 0 99.8454 99.8454 0.0515464 99.8454 0.0515464 99.8454 0 0 0 0 0

M08377_2.00_rc_shift3 (ZSCAN16_rc)
; positions_7nt_m2 versus M08377_2.00_rc (ZSCAN16_rc); m=24/24; ncol2=24; w=-1; offset=-1; strand=R; shift=3; score=0.441358; ---AyATATAYAyAyA ; cor=; Ncor= a 0 0 0 84.6715 3.2847 82.8467 2.9197 94.1606 5.4745 95.6204 0 89.0511 4.0146 97.4453 0 96.7153 c 0 0 0 0 27.7372 2.9197 12.7737 0 17.5182 0 27.3723 0.7299 42.3358 1.4599 55.1095 2.9197 g 0 0 0 9.1241 5.8394 14.2336 1.0949 5.8394 1.8248 4.3796 0 7.6642 0 0.7299 4.7445 0.365 t 0 0 0 6.2044 63.1387 0 83.2117 0 75.1825 0 72.6277 2.5547 53.6496 0.365 40.146 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift4 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=12; shift=4; ncol=16; ----waTATATATAtw ; Alignment reference a 0 0 0 0 5022 8469 1770 14881 1412 15210 1453 15086 1281 14491 4068 7749 c 0 0 0 0 3357 2455 1876 777 1881 658 1753 691 2138 933 4078 2943 g 0 0 0 0 2940 4070 934 2131 697 1748 660 1880 779 1876 2453 3355 t 0 0 0 0 7751 4076 14490 1281 15080 1454 15204 1413 14872 1770 8471 5023
M00332_2.00_shift4 (HOXB7,HOXC5,HOXC6)				; positions_7nt_m2 versus M00332_2.00 (HOXB7,HOXC5,HOXC6); m=1/24; ncol2=10; w=0; offset=0; strand=D; shift=4; score=0.755701; ----atWATATAya-- ; cor=; Ncor= a 0 0 0 0 32.1579 19.9591 29.1262 99.917 9.90596 79.5937 10.4727 80.8041 11.9766 45.7153 0 0 c 0 0 0 0 22.614 10.1889 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 32.0521 14.8387 0 0 g 0 0 0 0 22.614 20.0672 0.0276595 0.0276595 0.0276595 0.0276595 0.0276595 9.57764 2.41363 14.8387 0 0 t 0 0 0 0 22.614 49.7848 70.8184 0.0276595 90.0387 20.351 89.472 9.59064 53.5576 24.6072 0 0
M00255_2.00_shift4 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1)				; positions_7nt_m2 versus M00255_2.00 (FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1); m=2/24; ncol2=12; w=0; offset=0; strand=D; shift=4; score=0.743584; ----wrTATATwatrc ; cor=; Ncor= a 0 0 0 0 31.2198 43.2921 5.14749 82.9897 0.0360027 80.6356 9.64692 48.0179 55.4481 22.2678 29.6103 22.5695 c 0 0 0 0 19.7177 12.49 5.14749 2.46645 9.79381 0.0360027 9.47987 0.0360027 14.9292 12.546 19.8885 32.2914 g 0 0 0 0 19.7177 31.728 5.14749 2.46645 9.66312 9.57816 0.0360027 0.0360027 5.31832 12.546 30.6126 22.5695 t 0 0 0 0 29.3448 12.49 84.5575 12.0774 80.5071 9.75025 80.8372 51.9101 24.3043 52.6401 19.8885 22.5695
M00786_2.00_rc_shift5 (M00786_2.00_rc)				; positions_7nt_m2 versus M00786_2.00_rc; m=3/24; ncol2=9; w=0; offset=1; strand=R; shift=5; score=0.72694; -----ayatayata-- ; cor=; Ncor= a 0 0 0 0 0 50 12.5 62.5 12.5 62.5 12.5 62.5 12.5 50 0 0 c 0 0 0 0 0 16.6667 25 12.5 12.5 12.5 25 12.5 12.5 16.6667 0 0 g 0 0 0 0 0 16.6667 12.5 12.5 12.5 12.5 12.5 12.5 12.5 16.6667 0 0 t 0 0 0 0 0 16.6667 50 12.5 62.5 12.5 50 12.5 62.5 16.6667 0 0
M00333_2.00_rc_shift5 (HOXB7,HOXC5,HOXC6_rc)				; positions_7nt_m2 versus M00333_2.00_rc (HOXB7,HOXC5,HOXC6_rc); m=4/24; ncol2=10; w=0; offset=1; strand=R; shift=5; score=0.689427; -----wAATATATat- ; cor=; Ncor= a 0 0 0 0 0 37.9552 82.165 80.3235 9.83457 79.4955 20.1694 99.915 0.0283262 57.2618 22.5353 0 c 0 0 0 0 0 17.3895 2.49306 0.0283262 0.0283262 0.0283262 9.88726 0.0283262 0.0283262 7.6388 22.5353 0 g 0 0 0 0 0 17.3895 2.49306 0.0283262 0.0283262 10.0921 0.0283262 0.0283262 0.0283262 17.4351 22.5353 0 t 0 0 0 0 0 27.2657 12.8488 19.6199 90.1088 10.3841 69.915 0.0283262 99.915 17.6643 32.3942 0
M00308_2.00_shift6 (HESX1,NKX1-1,NKX1-2,OTP,SEBOX)				; positions_7nt_m2 versus M00308_2.00 (HESX1,NKX1-1,NKX1-2,OTP,SEBOX); m=5/24; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.682615; ------yATAtATar- ; cor=; Ncor= a 0 0 0 0 0 0 14.4198 90.4175 9.52605 99.9154 19.4162 99.9154 9.52605 61.2864 29.1397 0 c 0 0 0 0 0 0 34.7792 0.0281994 18.3564 0.0281994 19.8662 0.0281994 9.46571 9.19273 20.6297 0 g 0 0 0 0 0 0 14.4198 9.52605 0.0281994 0.0281994 0.0281994 0.0281994 0.0281994 20.1259 29.2821 0 t 0 0 0 0 0 0 36.3812 0.0281994 72.0893 0.0281994 60.6894 0.0281994 80.98 9.39492 20.9486 0
M00304_2.00_shift4 (HOXC5,NANOGP8,NKX1-1,NKX1-2,VENTX)				; positions_7nt_m2 versus M00304_2.00 (HOXC5,NANOGP8,NKX1-1,NKX1-2,VENTX); m=6/24; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.676802; ----aATAYATAy--- ; cor=; Ncor= a 0 0 0 0 40.0565 89.4224 0.0269769 99.9191 0.0269769 80.0595 0.0269769 89.9711 5.04582 0 0 0 c 0 0 0 0 19.9812 0.0269769 19.5574 0.0269769 30.9856 0.0269769 0.0269769 0.0269769 33.7592 0 0 0 g 0 0 0 0 19.9812 10.5237 0.0269769 0.0269769 0.0269769 19.8865 0.0269769 9.97497 14.9938 0 0 0 t 0 0 0 0 19.9812 0.0269769 80.3886 0.0269769 68.9604 0.0269769 99.9191 0.0269769 46.2012 0 0 0
M01693_2.00_rc_shift5 (M01693_2.00_rc)				; positions_7nt_m2 versus M01693_2.00_rc; m=7/24; ncol2=10; w=0; offset=1; strand=R; shift=5; score= 0.6278; -----rtAWWTATwt- ; cor=; Ncor= a 0 0 0 0 0 30.2779 23.9593 90.6185 73.2217 70.8945 10.9675 76.7638 10.28 26.0727 10.0113 0 c 0 0 0 0 0 20.3034 15.0083 0.0196195 0.0196195 0.0196195 0.0196195 0.0196195 8.83145 4.7162 19.3339 0 g 0 0 0 0 0 29.1152 15.0083 9.34227 0.0196195 0.0196195 0.0196195 0.0196195 0.0196195 13.3577 10.0113 0 t 0 0 0 0 0 20.3034 46.0241 0.0196195 26.7391 29.0663 88.9933 23.1969 80.869 55.8535 60.6435 0
M01672_2.00_shift6 (M01672_2.00)				; positions_7nt_m2 versus M01672_2.00; m=8/24; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.603812; ------tAWWTAWWta ; cor=; Ncor= a 0 0 0 0 0 0 24.811 83.1954 29.2968 70.1933 0.0230425 80.2506 68.6996 29.7562 21.3125 32.2088 c 0 0 0 0 0 0 15.2843 2.42597 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 9.73873 22.5971 g 0 0 0 0 0 0 24.824 2.42597 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 0.0230425 9.73873 22.5971 t 0 0 0 0 0 0 35.0807 11.9527 70.6571 29.7606 99.9309 19.7033 31.2544 70.1978 59.21 22.5971
M00371_2.00_shift2 (NR2E3)				; positions_7nt_m2 versus M00371_2.00 (NR2E3); m=9/24; ncol2=13; w=-2; offset=-2; strand=D; shift=2; score=0.594005; --actyAATaTATwc- ; cor=; Ncor= a 0 0 31.9047 22.6984 20.1188 17.9334 71.3816 69.6422 0.0160035 60.2687 22.3089 70.4617 4.89718 39.5138 21.6113 0 c 0 0 22.6984 31.9047 20.1188 27.6124 12.7782 9.22231 0.0160035 9.22231 2.31758 2.31758 18.4519 16.9283 35.1661 0 g 0 0 22.6984 22.6984 20.1188 8.08775 3.4047 10.8011 0.0160035 10.3344 2.31758 24.9031 4.89718 16.9283 21.6113 0 t 0 0 22.6984 22.6984 39.6435 46.3664 12.4354 10.3344 99.952 20.1746 73.0559 2.31758 71.7537 26.6297 21.6113 0
M08214_2.00_shift5 (BORCS8-MEF2B)				; positions_7nt_m2 versus M08214_2.00 (BORCS8-MEF2B); m=10/24; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.589152; -----yTAwwwwTAr- ; cor=; Ncor= a 0 0 0 0 0 0 0 100 50 50 50 50 0 100 50 0 c 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 t 0 0 0 0 0 50 100 0 50 50 50 50 100 0 0 0
M08609_2.00_shift0 (TBPL2)				; positions_7nt_m2 versus M08609_2.00 (TBPL2); m=11/24; ncol2=21; w=-4; offset=-4; strand=D; shift=0; score=0.520851; mwyswaTATATATwyC ; cor=; Ncor= a 28.6371 30.1021 12.1658 11.2231 48.3248 65.7135 8.11767 94.7483 2.07983 95.4667 1.20064 95.5608 5.90851 52.9666 24.7765 8.44102 c 27.0884 17.2576 38.3999 36.9687 12.9197 9.43762 2.49132 0.331348 0.601918 0.517672 0.438967 2.38488 2.59269 2.73321 26.6325 70.1617 g 19.3837 17.6397 22.8247 38.0802 12.2748 6.21646 1.00752 0.4462 0.225342 0.186526 0.241747 0.785493 0.791603 11.0816 19.8825 9.86462 t 24.8908 35.0006 26.6096 13.728 26.4806 18.6324 88.3835 4.47411 97.0929 3.82915 98.1186 1.26885 90.7072 33.2186 28.7085 11.5326
M00244_2.00_shift2 (WT1)				; positions_7nt_m2 versus M00244_2.00 (WT1); m=12/24; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.511894; --ttrwAAwATATw-- ; cor=; Ncor= a 0 0 22.5016 22.5016 30.0968 47.5232 89.9424 69.8156 30.2988 79.7833 12.4045 92.3885 5.06892 37.5588 0 0 c 0 0 22.5016 22.5016 19.9698 7.51413 9.98008 20.1718 9.90604 0.0387606 12.4095 2.53717 5.06892 17.5246 0 0 g 0 0 22.5016 22.5016 29.9635 7.51413 0.0387606 0.0387606 0.0387606 0.0387606 2.53717 2.53717 5.06892 17.5246 0 0 t 0 0 32.4952 32.4952 19.9698 37.4485 0.0387606 9.97388 59.7564 20.1392 72.6489 2.53717 84.7933 27.3919 0 0
M04857_2.00_shift3 (FOXR2)				; positions_7nt_m2 versus M04857_2.00 (FOXR2); m=13/24; ncol2=17; w=-1; offset=-1; strand=D; shift=3; score=0.507998; ---ayrTAwACATAAA ; cor=; Ncor= a 0 0 0 61.0519 10.0686 65.5193 1.72414 99.8007 56.0563 89.6181 0.060024 98.6211 0.462963 99.4702 72.0384 99.2074 c 0 0 0 6.65779 36.1556 8.21256 17.2414 0.13289 1.69014 0.0596659 90.1561 0.722259 0.0661376 0.0662252 6.09113 0.264201 g 0 0 0 23.3688 4.00458 25.1812 0.107759 0.0664452 13.7465 10.0239 0 0.328299 0.132275 0.0662252 4.22062 0.264201 t 0 0 0 8.92144 49.7712 1.08696 80.9267 0 28.507 0.298329 9.78391 0.328299 99.3386 0.397351 17.6499 0.264201
M00216_2.00_shift4 (TBPL2)				; positions_7nt_m2 versus M00216_2.00 (TBPL2); m=14/24; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.504397; ----wwtwwAw----- ; cor=; Ncor= a 0 0 0 0 31.7192 37.7028 23.8466 53.2428 29.0314 71.578 28.9234 0 0 0 0 0 c 0 0 0 0 18.8577 11.0202 12.3251 0.0769087 0.0533106 7.85215 11.9969 0 0 0 0 0 g 0 0 0 0 17.0632 11.2429 12.3251 9.53399 6.94748 19.121 10.4296 0 0 0 0 0 t 0 0 0 0 32.36 40.0342 51.5031 37.1463 63.9678 1.44887 48.65 0 0 0 0 0
M01679_2.00_shift5 (M01679_2.00)				; positions_7nt_m2 versus M01679_2.00; m=15/24; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.503296; -----WWAwAwAT--- ; cor=; Ncor= a 0 0 0 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 0 0 c 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 g 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 t 0 0 0 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0 0 0
M09432_2.00_rc_shift3 (TBP,TBPL2_rc)				; positions_7nt_m2 versus M09432_2.00_rc (TBP,TBPL2_rc); m=16/24; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.493761; ---sytTTTATAk--- ; cor=; Ncor= a 0 0 0 4.69799 7.38255 24.1611 1.34228 22.8188 4.02685 86.5772 14.094 77.8523 2.01342 0 0 0 c 0 0 0 57.047 49.6644 15.4362 19.4631 2.68456 4.02685 4.02685 4.69799 8.72483 15.4362 0 0 0 g 0 0 0 30.8725 3.3557 0.671141 2.01342 3.3557 6.04027 4.69799 0 8.72483 54.3624 0 0 0 t 0 0 0 7.38255 39.5973 59.7315 77.1812 71.1409 85.906 4.69799 81.2081 4.69799 28.1879 0 0 0
M11491_2.00_shift5 (M11491_2.00)				; positions_7nt_m2 versus M11491_2.00; m=17/24; ncol2=15; w=0; offset=1; strand=D; shift=5; score=0.488157; -----sTATAWAwrss ; cor=; Ncor= a 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 21.3368 c 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 37.7892 g 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 32.9049 t 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393 7.96915
M11388_2.00_shift5 (TBP,TBPL2)				; positions_7nt_m2 versus M11388_2.00 (TBP,TBPL2); m=18/24; ncol2=15; w=0; offset=1; strand=D; shift=5; score=0.488157; -----sTATAWAwrss ; cor=; Ncor= a 0 0 0 0 0 15.6812 4.11311 90.4884 0.771208 91.0026 68.8946 92.545 57.0694 39.8458 14.3959 21.3368 c 0 0 0 0 0 37.2751 11.8252 0 2.57069 0 0 0.771208 0.514139 11.3111 34.7044 37.7892 g 0 0 0 0 0 39.0746 4.62725 0.514139 0.514139 1.28535 0 5.14139 11.3111 40.3599 38.5604 32.9049 t 0 0 0 0 0 7.96915 79.4344 8.99743 96.144 7.71208 31.1054 1.54242 31.1054 8.48329 12.3393 7.96915
M00247_2.00_rc_shift2 (WT1_rc)				; positions_7nt_m2 versus M00247_2.00_rc (WT1_rc); m=19/24; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.486817; --aaaTaATATAt--- ; cor=; Ncor= a 0 0 32.4394 32.4394 52.5515 9.76394 60.642 90.0965 20.4433 99.8824 12.5045 72.436 22.2542 0 0 0 c 0 0 22.5202 22.5202 12.5098 9.86274 19.5498 0.0392063 0.0392063 0.0392063 12.9989 2.51901 12.5295 0 0 0 g 0 0 22.5202 22.5202 12.5098 0.0392063 0.0392063 0.0392063 0.0392063 0.0392063 2.51901 2.51901 12.5295 0 0 0 t 0 0 22.5202 22.5202 22.4289 80.3341 19.769 9.8251 79.4782 0.0392063 71.9777 22.526 52.6869 0 0 0
M01567_2.00_shift4 (TBPL2)				; positions_7nt_m2 versus M01567_2.00 (TBPL2); m=20/24; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.486009; ----wwwwtAw----- ; cor=; Ncor= a 0 0 0 0 31.5311 34.5705 27.1982 58.3542 21.9565 93.4996 42.2777 0 0 0 0 0 c 0 0 0 0 18.9343 14.1966 11.058 0.086859 0.643432 0.0353646 0.0470878 0 0 0 0 0 g 0 0 0 0 20.7174 21.1788 15.5359 11.0954 18.8981 5.19636 9.52823 0 0 0 0 0 t 0 0 0 0 28.8172 30.0541 46.2079 30.4636 58.502 1.26866 48.147 0 0 0 0 0
M11390_2.00_shift6 (TBP,TBPL2)				; positions_7nt_m2 versus M11390_2.00 (TBP,TBPL2); m=21/24; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.485752; ------tATAAATw-- ; cor=; Ncor= a 0 0 0 0 0 0 6.38298 72.3404 0 100 100 85.1064 6.38298 44.6809 0 0 c 0 0 0 0 0 0 8.51064 0 0 0 0 2.12766 6.38298 8.51064 0 0 g 0 0 0 0 0 0 19.1489 12.766 0 0 0 8.51064 12.766 8.51064 0 0 t 0 0 0 0 0 0 65.9574 14.8936 100 0 0 4.25532 74.4681 38.2979 0 0
M00248_2.00_shift1 (WT1)				; positions_7nt_m2 versus M00248_2.00 (WT1); m=22/24; ncol2=13; w=-3; offset=-3; strand=D; shift=1; score=0.48182; -aaTaTTATATkta-- ; cor=; Ncor= a 0 32.4631 39.6939 9.99275 65.2095 22.5183 0.0408538 69.7375 0.0408538 82.7733 4.93882 15.0481 19.9776 32.2609 0 0 c 0 22.5123 20.102 9.99275 14.9523 2.46114 0.0408538 0.0408538 10.3863 2.52855 4.93882 15.0481 19.9776 22.5797 0 0 g 0 22.5123 20.102 9.99275 5.06322 2.46114 0.0408538 9.68195 0.0408538 2.52855 4.93882 44.8494 19.9776 22.5797 0 0 t 0 22.5123 20.102 70.0218 14.775 72.5594 99.8774 20.5397 89.532 12.1696 85.1835 25.0544 40.0671 22.5797 0 0
M07738_2.00_shift5 (ZNF649)				; positions_7nt_m2 versus M07738_2.00 (ZNF649); m=23/24; ncol2=6; w=0; offset=1; strand=D; shift=5; score=0.44268; -----TTATAT----- ; cor=; Ncor= a 0 0 0 0 0 0.0515464 0.0515464 99.8454 0.0515464 99.8454 0.0515464 0 0 0 0 0 c 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 0 0 0 g 0 0 0 0 0 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0.0515464 0 0 0 0 0 t 0 0 0 0 0 99.8454 99.8454 0.0515464 99.8454 0.0515464 99.8454 0 0 0 0 0
M08377_2.00_rc_shift3 (ZSCAN16_rc)				; positions_7nt_m2 versus M08377_2.00_rc (ZSCAN16_rc); m=24/24; ncol2=24; w=-1; offset=-1; strand=R; shift=3; score=0.441358; ---AyATATAYAyAyA ; cor=; Ncor= a 0 0 0 84.6715 3.2847 82.8467 2.9197 94.1606 5.4745 95.6204 0 89.0511 4.0146 97.4453 0 96.7153 c 0 0 0 0 27.7372 2.9197 12.7737 0 17.5182 0 27.3723 0.7299 42.3358 1.4599 55.1095 2.9197 g 0 0 0 9.1241 5.8394 14.2336 1.0949 5.8394 1.8248 4.3796 0 7.6642 0 0.7299 4.7445 0.365 t 0 0 0 6.2044 63.1387 0 83.2117 0 75.1825 0 72.6277 2.5547 53.6496 0.365 40.146 0