/var/www/html/rsat/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_cisBP_Homo_sapiens.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/04/peak-motifs.2026-01-04.215525_2026-01-04.215525_0oPAHx/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4.tf
		file1	1	12	5308
	file2	6607 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Homo_sapiens_2019.tf
		file2		1		7		100.0001
		file2		2		9		100.0001
		file2		3		8		100.00002892
		file2		4		9		100.0001
		file2		5		10		100.0001
		file2		6		11		100.00004702
		file2		7		10		100.00006
		file2		8		10		100.00005411
		file2		9		10		100.000031
		file2		10		10		100.0001
		file2		11		9		100
		...	6597 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m4 M04386_2.00 positions_7nt_m4 ZNF263 0.721 0.601 12 10 10 12 0.8333 0.8333 1.0000 D 2
positions_7nt_m4 M04387_2.00 positions_7nt_m4 ZNF263 0.720 0.600 12 10 10 12 0.8333 0.8333 1.0000 R 0
positions_7nt_m4 M07771_2.00 positions_7nt_m4 ZNF674 0.788 0.563 12 12 10 14 0.7143 0.8333 0.8333 D -2
positions_7nt_m4 M07732_2.00 positions_7nt_m4 ZNF790 0.827 0.551 12 8 8 12 0.6667 0.6667 1.0000 D 1
positions_7nt_m4 M00336_2.00 positions_7nt_m4 PAX6 0.812 0.541 12 8 8 12 0.6667 0.6667 1.0000 R 1
positions_7nt_m4 M00766_2.00 positions_7nt_m4 M00766_2.00 0.744 0.496 12 8 8 12 0.6667 0.6667 1.0000 R 1
positions_7nt_m4 M00142_2.00 positions_7nt_m4 ZNF691 0.720 0.480 12 8 8 12 0.6667 0.6667 1.0000 R 1
positions_7nt_m4 M04392_2.00 positions_7nt_m4 SNAI2 0.832 0.475 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M08775_2.00 positions_7nt_m4 M08775_2.00 0.772 0.475 12 9 8 13 0.6154 0.6667 0.8889 D 4
positions_7nt_m4 M04443_2.00 positions_7nt_m4 SNAI1 0.827 0.473 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M04394_2.00 positions_7nt_m4 SNAI2 0.812 0.464 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M04607_2.00 positions_7nt_m4 SNAI3 0.793 0.453 12 10 8 14 0.5714 0.6667 0.8000 D 4
positions_7nt_m4 M08973_2.00 positions_7nt_m4 M08973_2.00 0.704 0.453 12 11 9 14 0.6429 0.7500 0.8182 D 3
positions_7nt_m4 M04393_2.00 positions_7nt_m4 SNAI2 0.792 0.452 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M02728_2.00 positions_7nt_m4 TCF4 0.767 0.448 12 7 7 12 0.5833 0.5833 1.0000 R 0
positions_7nt_m4 M04444_2.00 positions_7nt_m4 SNAI1 0.782 0.447 12 10 8 14 0.5714 0.6667 0.8000 D 4
positions_7nt_m4 M04608_2.00 positions_7nt_m4 SNAI3 0.778 0.445 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M04442_2.00 positions_7nt_m4 SNAI1 0.767 0.438 12 10 8 14 0.5714 0.6667 0.8000 D 4
positions_7nt_m4 M08853_2.00 positions_7nt_m4 SNAI2 0.765 0.437 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M04395_2.00 positions_7nt_m4 SNAI2 0.759 0.434 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M10091_2.00 positions_7nt_m4 ZEB1 0.709 0.425 12 12 9 15 0.6000 0.7500 0.7500 D 3
positions_7nt_m4 M04441_2.00 positions_7nt_m4 SNAI1 0.724 0.414 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M02807_2.00 positions_7nt_m4 TCF4 0.707 0.404 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M02808_2.00 positions_7nt_m4 TCF4 0.706 0.403 12 10 8 14 0.5714 0.6667 0.8000 R -2
positions_7nt_m4 M02794_2.00 positions_7nt_m4 MESP1 0.702 0.401 12 10 8 14 0.5714 0.6667 0.8000 D 4 
 Host name	rsat
 Job started	2026-01-04.221130
 Job done	2026-01-04.221138
 Seconds	2.67
	user	2.67
	system	0.56
	cuser	3.4
;	csystem	1.03