peak-motifs ChIP

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=94.26; evalue=5.5e-95

ssgCGGAGCss

SSGCTCCGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgCGGAGCss

ZNF441 M07717_2.00 R 10 0.7692 0.867 0.667 NA NA

ZNF331 M07585_2.00 D 11 0.9167 0.702 0.644 NA NA

M11037_2.00 M11037_2.00 D 10 0.8333 0.720 0.600 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2280 (19.19%)
Max nb of predicted sites per peak: 10
(chrUn_gl000220:108909-116663)
Mean nb of predicted sites per peak: 1.53

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=86.43; evalue=3.7e-87

ssgCTGGGCAGGGCagg

CCTGCCCTGCCCAGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgCTGGGCAGGGCagg

KLF3 M08876_2.00 R 17 0.8947 0.746 0.667 NA NA

M08982_2.00 M08982_2.00 R 17 0.8947 0.746 0.667 NA NA

ZNF543 M08347_2.00 D 12 0.7059 0.863 0.609 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2020 (17.00%)
Max nb of predicted sites per peak: 14
(chr11:44972265-44972756)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=81.46; evalue=3.5e-82

ccCGCCCCCAccc

GGGTGGGGGCGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCGCCCCCAccc

EGR1 M04438_2.00 D 13 1.0000 0.847 0.847 NA NA

EGR1 M04437_2.00 D 13 1.0000 0.815 0.815 NA NA

M08996_2.00 M08996_2.00 D 13 0.9286 0.865 0.804 NA NA

Total matches= 201 (198 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3357 (28.26%)
Max nb of predicted sites per peak: 26
(chr1:809755-812454)
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=60.05; evalue=8.9e-61

scCGCCcCCGCcs

SGGCGGGGGCGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scCGCCcCCGCcs

EGR1 M04437_2.00 D 13 1.0000 0.854 0.854 NA NA

EGR4 M04462_2.00 D 13 1.0000 0.853 0.853 NA NA

M08996_2.00 M08996_2.00 D 13 0.9286 0.915 0.849 NA NA

Total matches= 180 (177 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3627 (30.53%)
Max nb of predicted sites per peak: 25
(chr2:90448602-90450280)
Mean nb of predicted sites per peak: 2.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=55.27; evalue=5.4e-56

yyCCCCTCcc

GGGAGGGGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCCCCTCcc

MAZ M08290_2.00 D 9 0.9000 0.906 0.815 NA NA

ZNF281 M08321_2.00 D 10 0.8333 0.918 0.765 NA NA

ZNF468 M07754_2.00 D 10 0.8333 0.898 0.749 NA NA

Total matches= 105 (102 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3599 (30.30%)
Max nb of predicted sites per peak: 52
(chr10:111986096-111987105)
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=2.65; evalue=0.0022

ggAGGTGGrr

YYCCACCTCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggAGGTGGrr

TBX3 M09426_2.00 D 10 0.9091 0.858 0.780 NA NA

FIGLA M04205_2.00 R 9 0.9000 0.864 0.777 NA NA

M01723_2.00 M01723_2.00 R 10 1.0000 0.774 0.774 NA NA

Total matches= 218 (215 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3222 (27.12%)
Max nb of predicted sites per peak: 47
(chr7:1311580-1312692)
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=2.19; evalue=0.0065

ggcGTGGGAGgr

YCCTCCCACGCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggcGTGGGAGgr

M09515_2.00 M09515_2.00 R 12 1.0000 0.874 0.874 NA NA

EGR1 M04438_2.00 R 12 0.9231 0.852 0.787 NA NA

EGR1 M04437_2.00 R 12 0.9231 0.839 0.775 NA NA

Total matches= 158 (155 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2588 (21.79%)
Max nb of predicted sites per peak: 36
(chr22:37622713-37623683)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=1.44; evalue=0.036

wwcATAAAAww

WWTTTTATGWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwcATAAAAww

HOXC10,HOXC6 M03228_2.00 R 10 0.9091 0.935 0.850 NA NA

HOXC5,HOXC6 M09672_2.00 D 10 0.9091 0.927 0.843 NA NA

M09572_2.00 M09572_2.00 R 10 0.9091 0.893 0.812 NA NA

Total matches= 246 (243 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3230 (27.19%)
Max nb of predicted sites per peak: 23
(chr9:3504355-3504839)
Mean nb of predicted sites per peak: 1.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=1.44; evalue=0.036

wwAATAAAAww

WWTTTTATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAATAAAAww

HOXC13 M03129_2.00 R 10 0.9091 0.907 0.825 NA NA

M03247_2.00 M03247_2.00 R 10 0.9091 0.904 0.822 NA NA

HOXC6 M03253_2.00 R 10 0.9091 0.900 0.819 NA NA

Total matches= 257 (254 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3799 (31.98%)
Max nb of predicted sites per peak: 31
(chr9:3504355-3504839)
Mean nb of predicted sites per peak: 2.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=0.49; evalue=0.32

waCAGATGtw

WACATCTGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAGATGtw

NEUROD4,NEUROD6 M08764_2.00 D 10 1.0000 0.898 0.898 NA NA

NEUROD1,NEUROD4,NEUROD6 M08735_2.00 D 10 1.0000 0.898 0.898 NA NA

NEUROD4,NEUROD6 M08770_2.00 D 10 1.0000 0.895 0.895 NA NA

Total matches= 244 (241 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2740 (23.07%)
Max nb of predicted sites per peak: 24
(chr6:160072965-160073327)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=70.20; evalue=6.3e-71

ccCCCGCCcCCgCcs

SGGCGGGGGCGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCGCCcCCgCcs

SP2 M08092_2.00 D 15 1.0000 0.872 0.872 NA NA

M08996_2.00 M08996_2.00 D 14 0.9333 0.926 0.864 NA NA

KLF10 M08317_2.00 D 15 1.0000 0.850 0.850 NA NA

Total matches= 215 (212 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3726 (31.37%)
Max nb of predicted sites per peak: 33
(chr2:90448602-90450280)
Mean nb of predicted sites per peak: 2.72

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=56.32; evalue=4.8e-57

ssCGGGAGCGsg

CSCGCTCCCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGGGAGCGsg

M05860_2.00 M05860_2.00 R 12 0.9231 0.716 0.661 NA NA

M08996_2.00 M08996_2.00 R 12 0.8571 0.746 0.639 NA NA

EGR1 M07928_2.00 R 12 0.8000 0.791 0.633 NA NA

Total matches= 49 (46 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2400 (20.20%)
Max nb of predicted sites per peak: 10
(chrUn_gl000220:108909-116663)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=51.08; evalue=8.3e-52

wwATTTTTAww

WWTAAAAATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwATTTTTAww

BORCS8-MEF2B,MEF2C M09597_2.00 R 11 0.9167 0.788 0.722 NA NA

BORCS8-MEF2B,MEF2A M03340_2.00 R 11 0.9167 0.774 0.710 NA NA

BORCS8-MEF2B,MEF2C M02745_2.00 R 11 0.9167 0.772 0.708 NA NA

Total matches= 241 (238 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3786 (31.87%)
Max nb of predicted sites per peak: 63
(chr9:3504355-3504839)
Mean nb of predicted sites per peak: 2.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=48.68; evalue=2.1e-49

hcACTCCCACmy

RKGTGGGAGTGD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hcACTCCCACmy

M05860_2.00 M05860_2.00 D 12 0.9231 0.789 0.729 NA NA

M06073_2.00 M06073_2.00 D 12 0.8571 0.842 0.722 NA NA

M09515_2.00 M09515_2.00 D 11 0.8462 0.850 0.719 NA NA

Total matches= 165 (162 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2921 (24.59%)
Max nb of predicted sites per peak: 47
(chr7:1311580-1312692)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=41.71; evalue=1.9e-42

ssCGCCTGCGss

SSCGCAGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCTGCGss

NRF1 M08177_2.00 D 11 0.9167 0.864 0.792 NA NA

NRF1 M03580_2.00 R 12 1.0000 0.759 0.759 NA NA

ZNF454 M04574_2.00 R 12 0.8571 0.789 0.676 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1928 (16.23%)
Max nb of predicted sites per peak: 13
(chr1:21672075-21672564)
Mean nb of predicted sites per peak: 1.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=4.24; evalue=5.8e-05

cmCTCCCACac

GTGTGGGAGKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmCTCCCACac

M09515_2.00 M09515_2.00 D 11 0.9167 0.876 0.803 NA NA

M00776_2.00 M00776_2.00 D 10 0.9091 0.841 0.765 NA NA

E2F6 M08107_2.00 R 11 1.0000 0.737 0.737 NA NA

Total matches= 161 (158 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3422 (28.81%)
Max nb of predicted sites per peak: 47
(chr7:1311580-1312692)
Mean nb of predicted sites per peak: 1.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=1.66; evalue=0.022

wwTATATATAww

WWTATATATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATATATAww

HOXB7,HOXC5,HOXC6 M00332_2.00 D 10 0.8333 0.907 0.756 NA NA

FOXC1,FOXD4,FOXD4L1,FOXD4L3,FOXD4L5,FOXD4L6,FOXI3,FOXP4,FOXS1 M00255_2.00 D 12 1.0000 0.744 0.744 NA NA

M00786_2.00 M00786_2.00 R 9 0.7500 0.969 0.727 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1784 (15.02%)
Max nb of predicted sites per peak: 484
(chr22:47168021-47168522)
Mean nb of predicted sites per peak: 7.96

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=1.52; evalue=0.03

ccCTCCCCCrc

GYGGGGGAGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCTCCCCCrc

ZNF467 M08358_2.00 D 11 0.9167 0.901 0.826 NA NA

WT1 M00249_2.00 D 10 0.8333 0.949 0.791 NA NA

M00139_2.00 M00139_2.00 D 10 0.9091 0.839 0.763 NA NA

Total matches= 154 (151 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3095 (26.05%)
Max nb of predicted sites per peak: 30
(chr16:89149461-89150889)
Mean nb of predicted sites per peak: 1.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=1.45; evalue=0.035

srGGTGCACCys

SRGGTGCACCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGGTGCACCys

ZNF263 M04386_2.00 D 10 0.8333 0.721 0.601 NA NA

ZNF263 M04387_2.00 R 10 0.8333 0.720 0.600 NA NA

ZNF674 M07771_2.00 D 10 0.7143 0.788 0.563 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 221 (1.86%)
Max nb of predicted sites per peak: 12
(chr1:844897-845342)
Mean nb of predicted sites per peak: 2.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=0.90; evalue=0.13

syGTGCGCACrs

SYGTGCGCACRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

cisBP_Homo_sapiens

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGTGCGCACrs

M00136_2.00 M00136_2.00 D 9 0.7500 0.854 0.640 NA NA

ZBTB14 M08954_2.00 D 9 0.7500 0.746 0.559 NA NA

E2F2 M04696_2.00 D 10 0.7692 0.721 0.554 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1083 (9.12%)
Max nb of predicted sites per peak: 40
(chr2:242949043-242949916)
Mean nb of predicted sites per peak: 3.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus cisBP_Homo_sapiens database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: ChIP_WT1 (04/01/2026 22:22)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results