position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title p53 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 774 Sum of sequence lengths 244033 Min sequence length 0 Max sequence length 925 Average sequence length 315 Possible positions 244033 Oligonucleotide statistics: Total occurrences 224703 Position interval parameters: Position interval 20 Number of windows 48 Total positions 244033 Degrees of freedom 47 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -24 [-479,-460] -469.5 1 3 2 -23 [-459,-440] -449.5 1 20 3 -22 [-439,-420] -429.5 2 28 4 -21 [-419,-400] -409.5 5 66 5 -20 [-399,-380] -389.5 5 100 6 -19 [-379,-360] -369.5 8 134 7 -18 [-359,-340] -349.5 14 217 8 -17 [-339,-320] -329.5 16 296 9 -16 [-319,-300] -309.5 25 457 10 -15 [-299,-280] -289.5 34 626 11 -14 [-279,-260] -269.5 44 765 12 -13 [-259,-240] -249.5 72 1159 13 -12 [-239,-220] -229.5 107 1760 14 -11 [-219,-200] -209.5 160 2733 15 -10 [-199,-180] -189.5 217 3740 16 -9 [-179,-160] -169.5 301 5251 17 -8 [-159,-140] -149.5 399 7063 18 -7 [-139,-120] -129.5 507 9085 19 -6 [-119,-100] -109.5 657 11614 20 -5 [-99,-80] -89.5 774 15374 21 -4 [-79,-60] -69.5 774 15480 22 -3 [-59,-40] -49.5 774 15480 23 -2 [-39,-20] -29.5 774 15480 24 -1 [-19,0] -9.5 774 15480 25 0 [1,20] 10.5 774 15480 26 1 [21,40] 30.5 774 15480 27 2 [41,60] 50.5 774 15480 28 3 [61,80] 70.5 774 15480 29 4 [81,100] 90.5 774 15256 30 5 [101,120] 110.5 646 11459 31 6 [121,140] 130.5 503 8988 32 7 [141,160] 150.5 394 6959 33 8 [161,180] 170.5 296 5173 34 9 [181,200] 190.5 211 3680 35 10 [201,220] 210.5 156 2673 36 11 [221,240] 230.5 104 1714 37 12 [241,260] 250.5 71 1139 38 13 [261,280] 270.5 43 754 39 14 [281,300] 290.5 33 612 40 15 [301,320] 310.5 25 450 41 16 [321,340] 330.5 16 292 42 17 [341,360] 350.5 14 210 43 18 [361,380] 370.5 8 131 44 19 [381,400] 390.5 5 100 45 20 [401,420] 410.5 4 62 46 21 [421,440] 430.5 2 28 47 22 [441,460] 450.5 1 20 48 23 [461,480] 470.5 1 2 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -469.5 occurrences in window 1 [-479,-460] 11 -449.5 occurrences in window 2 [-459,-440] 12 -429.5 occurrences in window 3 [-439,-420] 13 -409.5 occurrences in window 4 [-419,-400] 14 -389.5 occurrences in window 5 [-399,-380] 15 -369.5 occurrences in window 6 [-379,-360] 16 -349.5 occurrences in window 7 [-359,-340] 17 -329.5 occurrences in window 8 [-339,-320] 18 -309.5 occurrences in window 9 [-319,-300] 19 -289.5 occurrences in window 10 [-299,-280] 20 -269.5 occurrences in window 11 [-279,-260] 21 -249.5 occurrences in window 12 [-259,-240] 22 -229.5 occurrences in window 13 [-239,-220] 23 -209.5 occurrences in window 14 [-219,-200] 24 -189.5 occurrences in window 15 [-199,-180] 25 -169.5 occurrences in window 16 [-179,-160] 26 -149.5 occurrences in window 17 [-159,-140] 27 -129.5 occurrences in window 18 [-139,-120] 28 -109.5 occurrences in window 19 [-119,-100] 29 -89.5 occurrences in window 20 [-99,-80] 30 -69.5 occurrences in window 21 [-79,-60] 31 -49.5 occurrences in window 22 [-59,-40] 32 -29.5 occurrences in window 23 [-39,-20] 33 -9.5 occurrences in window 24 [-19,0] 34 10.5 occurrences in window 25 [1,20] 35 30.5 occurrences in window 26 [21,40] 36 50.5 occurrences in window 27 [41,60] 37 70.5 occurrences in window 28 [61,80] 38 90.5 occurrences in window 29 [81,100] 39 110.5 occurrences in window 30 [101,120] 40 130.5 occurrences in window 31 [121,140] 41 150.5 occurrences in window 32 [141,160] 42 170.5 occurrences in window 33 [161,180] 43 190.5 occurrences in window 34 [181,200] 44 210.5 occurrences in window 35 [201,220] 45 230.5 occurrences in window 36 [221,240] 46 250.5 occurrences in window 37 [241,260] 47 270.5 occurrences in window 38 [261,280] 48 290.5 occurrences in window 39 [281,300] 49 310.5 occurrences in window 40 [301,320] 50 330.5 occurrences in window 41 [321,340] 51 350.5 occurrences in window 42 [341,360] 52 370.5 occurrences in window 43 [361,380] 53 390.5 occurrences in window 44 [381,400] 54 410.5 occurrences in window 45 [401,420] 55 430.5 occurrences in window 46 [421,440] 56 450.5 occurrences in window 47 [441,460] 57 470.5 occurrences in window 48 [461,480]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 56980 | 160.6 | 47 | 2.5e-14 | 1e-13 | 13.00 | 1 | 1 | 4 | 7 | 14 | 27 | 45 | 58 | 76 | 110 | 153 | 176 | 313 | 489 | 692 | 925 | 1286 | 1784 | 2199 | 2748 | 3715 | 3624 | 3395 | 3386 | 3367 | 3407 | 3447 | 3515 | 3581 | 3594 | 2781 | 2189 | 1722 | 1256 | 926 | 635 | 426 | 294 | 169 | 144 | 103 | 82 | 39 | 32 | 22 | 13 | 3 | 6 | 0 |
| g | g | 56090 | 113.3 | 47 | 2.1e-07 | 8.5e-07 | 6.07 | 2 | 0 | 7 | 10 | 28 | 23 | 29 | 60 | 61 | 109 | 145 | 201 | 298 | 454 | 682 | 837 | 1284 | 1690 | 2131 | 2651 | 3511 | 3612 | 3462 | 3463 | 3513 | 3592 | 3548 | 3540 | 3544 | 3447 | 2473 | 1941 | 1560 | 1220 | 853 | 677 | 403 | 301 | 205 | 174 | 136 | 70 | 52 | 30 | 27 | 22 | 9 | 5 | 0 |
| c | c | 55298 | 107.4 | 47 | 1.3e-06 | 5e-06 | 5.30 | 3 | 0 | 3 | 6 | 7 | 21 | 29 | 58 | 98 | 121 | 166 | 218 | 271 | 402 | 661 | 941 | 1250 | 1572 | 1964 | 2568 | 3560 | 3539 | 3546 | 3607 | 3586 | 3517 | 3495 | 3432 | 3382 | 3339 | 2497 | 1979 | 1531 | 1150 | 823 | 590 | 419 | 277 | 179 | 145 | 111 | 80 | 68 | 34 | 27 | 12 | 10 | 6 | 1 |
| t | t | 56335 | 96.5 | 47 | 2.9e-05 | 0.00011 | 3.94 | 4 | 2 | 6 | 5 | 17 | 29 | 31 | 41 | 61 | 117 | 162 | 170 | 277 | 409 | 650 | 947 | 1278 | 1685 | 2230 | 2759 | 3564 | 3508 | 3617 | 3445 | 3438 | 3381 | 3406 | 3476 | 3508 | 3524 | 2587 | 2163 | 1690 | 1275 | 910 | 649 | 422 | 251 | 201 | 149 | 100 | 60 | 51 | 35 | 24 | 15 | 6 | 3 | 1 |
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