/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title p53 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	774
	Sum of sequence lengths      	244033
	Min sequence length          	0
	Max sequence length          	925
	Average sequence length      	315
	Possible positions           	243259
 Oligonucleotide statistics:
	Total occurrences    	223718
 Position interval parameters:
	Position interval    	20
	Number of windows    	48
	Total positions      	243259
	Degrees of freedom   	47
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-24	[-479,-460]	-469.5	1	3
	2	-23	[-459,-440]	-449.5	1	20
	3	-22	[-439,-420]	-429.5	2	28
	4	-21	[-419,-400]	-409.5	5	66
	5	-20	[-399,-380]	-389.5	5	100
	6	-19	[-379,-360]	-369.5	8	134
	7	-18	[-359,-340]	-349.5	14	217
	8	-17	[-339,-320]	-329.5	16	296
	9	-16	[-319,-300]	-309.5	25	457
	10	-15	[-299,-280]	-289.5	34	626
	11	-14	[-279,-260]	-269.5	44	765
	12	-13	[-259,-240]	-249.5	72	1159
	13	-12	[-239,-220]	-229.5	107	1760
	14	-11	[-219,-200]	-209.5	160	2733
	15	-10	[-199,-180]	-189.5	217	3740
	16	-9	[-179,-160]	-169.5	301	5251
	17	-8	[-159,-140]	-149.5	399	7063
	18	-7	[-139,-120]	-129.5	507	9085
	19	-6	[-119,-100]	-109.5	657	11614
	20	-5	[-99,-80]	-89.5	774	15374
	21	-4	[-79,-60]	-69.5	774	15480
	22	-3	[-59,-40]	-49.5	774	15480
	23	-2	[-39,-20]	-29.5	774	15480
	24	-1	[-19,0]	-9.5	774	15480
	25	0	[1,20]	10.5	774	15480
	26	1	[21,40]	30.5	774	15480
	27	2	[41,60]	50.5	774	15480
	28	3	[61,80]	70.5	774	15480
	29	4	[81,100]	90.5	774	15128
	30	5	[101,120]	110.5	641	11316
	31	6	[121,140]	130.5	500	8879
	32	7	[141,160]	150.5	393	6861
	33	8	[161,180]	170.5	296	5088
	34	9	[181,200]	190.5	209	3625
	35	10	[201,220]	210.5	156	2621
	36	11	[221,240]	230.5	102	1681
	37	12	[241,260]	250.5	71	1111
	38	13	[261,280]	270.5	41	744
	39	14	[281,300]	290.5	33	604
	40	15	[301,320]	310.5	25	441
	41	16	[321,340]	330.5	16	290
	42	17	[341,360]	350.5	13	204
	43	18	[361,380]	370.5	8	128
	44	19	[381,400]	390.5	5	99
	45	20	[401,420]	410.5	4	60
	46	21	[421,440]	430.5	2	27
	47	22	[441,460]	450.5	1	20
	48	23	[461,480]	470.5	1	1

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-469.5         	occurrences in window	1	[-479,-460]
	11	-449.5         	occurrences in window	2	[-459,-440]
	12	-429.5         	occurrences in window	3	[-439,-420]
	13	-409.5         	occurrences in window	4	[-419,-400]
	14	-389.5         	occurrences in window	5	[-399,-380]
	15	-369.5         	occurrences in window	6	[-379,-360]
	16	-349.5         	occurrences in window	7	[-359,-340]
	17	-329.5         	occurrences in window	8	[-339,-320]
	18	-309.5         	occurrences in window	9	[-319,-300]
	19	-289.5         	occurrences in window	10	[-299,-280]
	20	-269.5         	occurrences in window	11	[-279,-260]
	21	-249.5         	occurrences in window	12	[-259,-240]
	22	-229.5         	occurrences in window	13	[-239,-220]
	23	-209.5         	occurrences in window	14	[-219,-200]
	24	-189.5         	occurrences in window	15	[-199,-180]
	25	-169.5         	occurrences in window	16	[-179,-160]
	26	-149.5         	occurrences in window	17	[-159,-140]
	27	-129.5         	occurrences in window	18	[-139,-120]
	28	-109.5         	occurrences in window	19	[-119,-100]
	29	-89.5          	occurrences in window	20	[-99,-80]
	30	-69.5          	occurrences in window	21	[-79,-60]
	31	-49.5          	occurrences in window	22	[-59,-40]
	32	-29.5          	occurrences in window	23	[-39,-20]
	33	-9.5           	occurrences in window	24	[-19,0]
	34	10.5           	occurrences in window	25	[1,20]
	35	30.5           	occurrences in window	26	[21,40]
	36	50.5           	occurrences in window	27	[41,60]
	37	70.5           	occurrences in window	28	[61,80]
	38	90.5           	occurrences in window	29	[81,100]
	39	110.5          	occurrences in window	30	[101,120]
	40	130.5          	occurrences in window	31	[121,140]
	41	150.5          	occurrences in window	32	[141,160]
	42	170.5          	occurrences in window	33	[161,180]
	43	190.5          	occurrences in window	34	[181,200]
	44	210.5          	occurrences in window	35	[201,220]
	45	230.5          	occurrences in window	36	[221,240]
	46	250.5          	occurrences in window	37	[241,260]
	47	270.5          	occurrences in window	38	[261,280]
	48	290.5          	occurrences in window	39	[281,300]
	49	310.5          	occurrences in window	40	[301,320]
	50	330.5          	occurrences in window	41	[321,340]
	51	350.5          	occurrences in window	42	[341,360]
	52	370.5          	occurrences in window	43	[361,380]
	53	390.5          	occurrences in window	44	[381,400]
	54	410.5          	occurrences in window	45	[401,420]
	55	430.5          	occurrences in window	46	[421,440]
	56	450.5          	occurrences in window	47	[441,460]
	57	470.5          	occurrences in window	48	[461,480]
seq id occ chi2 df Pval Eval sig rank -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5
aa aa 16436 226.7 47 2.3e-25 3.7e-24 23.43 1 0 1 2 4 8 18 20 24 36 42 46 118 168 218 286 382 581 678 824 1087 1021 943 935 881 882 968 995 993 1061 829 636 541 376 266 195 123 98 43 34 26 19 9 9 4 4 1 1 0
tt tt 16020 183.2 47 5.7e-18 9.2e-17 16.04 2 0 1 2 7 7 10 11 17 38 48 42 92 108 182 290 375 528 661 841 991 952 1021 890 915 822 947 985 1041 1072 733 650 512 384 264 203 142 56 68 47 25 15 10 4 4 4 2 1 0
gg gg 16790 139.8 47 3.8e-11 6.1e-10 9.22 3 0 2 2 15 5 9 24 18 34 37 60 101 145 230 219 388 541 688 805 995 1075 1011 982 1094 1105 1065 1049 1090 990 692 538 476 386 228 225 121 107 63 56 51 23 15 6 11 9 4 0 0
cg cg 4596 101.8 47 6.4e-06 0.0001 3.99 4 0 0 1 2 1 3 8 10 13 14 22 37 48 60 88 113 149 149 213 281 270 284 311 295 256 274 291 278 274 219 126 125 96 62 64 57 34 17 20 9 8 4 2 2 3 2 1 0
ta ta 9545 91.8 47 1.0e-04 0.0016 2.79 5 1 0 0 1 9 8 7 9 20 27 19 42 79 119 174 212 308 377 473 638 606 582 538 572 561 515 585 578 567 485 397 318 230 163 105 86 41 23 18 18 11 6 7 7 3 0 0 0
cc cc 16399 91.5 47 1.1e-04 0.0018 2.75 6 0 1 1 0 6 9 19 38 42 50 68 82 105 213 289 360 433 568 767 1100 1053 1068 1058 1060 1095 1035 1024 967 988 729 599 461 319 223 178 137 56 51 37 42 24 23 5 8 3 4 1 0
gc gc 14150 76.6 47 4.1e-03 0.066 1.18 7 0 1 4 1 7 5 15 22 26 47 58 67 105 157 248 316 442 492 636 904 939 902 946 936 931 915 928 861 820 587 465 353 264 224 147 112 82 50 44 34 14 19 8 8 5 2 1 0
ct ct 16927 64.3 47 4.7e-02 0.76 0.12 8 0 2 1 3 11 8 14 21 38 50 61 74 123 202 306 392 499 618 807 1105 1093 1129 1139 1077 1061 1065 1022 1033 967 733 598 458 377 261 170 115 91 56 35 31 21 20 18 12 5 3 2 0
ga ga 13598 51.4 47 3.1e-01 4.9 -0.69 9 0 3 3 7 6 11 13 15 29 30 46 79 116 168 202 312 391 506 676 897 901 788 806 786 829 865 827 913 851 655 500 374 293 215 148 104 65 51 36 31 22 8 6 6 4 1 3 0
ag ag 17281 50.1 47 3.5e-01 5.6 -0.75 10 0 1 5 5 7 10 17 23 36 42 61 78 143 221 281 410 505 643 817 1136 1159 1035 1051 1000 1071 1043 1082 1113 1096 806 665 465 374 282 194 120 77 54 55 33 28 12 10 7 4 1 3 0
tg tg 17225 50.1 47 3.5e-01 5.6 -0.75 11 1 3 2 6 11 6 11 13 24 47 58 86 122 179 242 376 486 674 820 1096 1095 1131 1132 1112 1176 1130 1103 1063 1059 723 597 468 342 273 177 97 83 62 45 35 13 20 10 8 5 2 1 0
tc tc 13301 46.9 47 4.8e-01 7.6 -0.88 12 0 2 1 3 2 7 12 22 35 40 51 57 100 168 241 315 361 511 621 836 846 879 881 834 819 814 799 821 791 610 496 366 300 195 151 89 62 45 37 22 21 15 12 4 3 2 1 1
at at 11822 43.8 47 6.1e-01 9.7 -0.99 13 1 2 0 3 6 10 5 13 20 38 28 56 92 138 187 246 360 461 576 779 731 699 694 755 770 706 735 757 703 587 466 358 237 201 124 99 51 39 30 22 15 10 4 5 3 0 0 0
gt gt 11297 37.3 47 8.4e-01 13 -1.13 14 0 1 1 5 5 4 8 6 20 31 37 51 88 127 168 266 315 441 529 713 694 758 725 690 722 696 735 677 744 503 407 336 256 174 136 58 44 39 35 18 10 9 9 2 2 1 1 0
ca ca 17142 33.5 47 9.3e-01 15 -1.17 15 0 0 3 2 3 9 17 29 28 52 67 78 125 186 258 384 490 627 777 1067 1117 1060 1093 1154 1098 1121 1090 1099 1083 785 630 461 333 266 172 102 85 51 52 27 26 17 9 5 1 1 2 0
ac ac 11189 24.4 47 1.0e+00 16 -1.20 16 0 0 0 2 6 7 16 16 18 31 41 61 86 115 168 246 336 411 526 710 708 707 704 726 680 726 700 715 704 520 393 332 248 161 111 76 63 32 23 17 20 7 9 6 2 1 2 0 
 Host name	rsat
 Job started	2026-01-05.052005
 Job done	2026-01-05.052006
 Seconds	1.41
	user	1.41
	system	0.01
	cuser	0
;	csystem	0