compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf Output files match_table_txt $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant html_index $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.052000_2026-01-05.052000_2qIqyX/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf file1 1 12 529 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv3_m5 | MA0136.4 | oligos_6nt_mkv3_m5 | Elf5 | 0.921 | 0.614 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 2 |
| oligos_6nt_mkv3_m5 | MA0474.4 | oligos_6nt_mkv3_m5 | Erg | 0.734 | 0.612 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m5 | MA0062.4 | oligos_6nt_mkv3_m5 | GABPA | 0.721 | 0.601 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 1 |
| oligos_6nt_mkv3_m5 | MA0640.3 | oligos_6nt_mkv3_m5 | ELF3 | 0.780 | 0.585 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| oligos_6nt_mkv3_m5 | MA0598.4 | oligos_6nt_mkv3_m5 | EHF | 0.768 | 0.576 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | R | 2 |
| oligos_6nt_mkv3_m5 | MA2332.1 | oligos_6nt_mkv3_m5 | ZNF175 | 0.747 | 0.560 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m5 | MA0761.3 | oligos_6nt_mkv3_m5 | ETV1 | 0.739 | 0.554 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m5 | MA1992.2 | oligos_6nt_mkv3_m5 | Ikzf3 | 0.735 | 0.551 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| oligos_6nt_mkv3_m5 | MA0149.1 | oligos_6nt_mkv3_m5 | EWSR1-FLI1 | 0.815 | 0.544 | 12 | 18 | 12 | 18 | 0.6667 | 1.0000 | 0.6667 | D | -4 |
| oligos_6nt_mkv3_m5 | MA0473.4 | oligos_6nt_mkv3_m5 | ELF1 | 0.722 | 0.541 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| oligos_6nt_mkv3_m5 | MA1508.2 | oligos_6nt_mkv3_m5 | IKZF1 | 0.760 | 0.507 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | MA1935.2 | oligos_6nt_mkv3_m5 | ERF::FOXI1 | 0.716 | 0.495 | 12 | 10 | 9 | 13 | 0.6923 | 0.7500 | 0.9000 | D | -1 |
| oligos_6nt_mkv3_m5 | MA2326.1 | oligos_6nt_mkv3_m5 | IKZF2 | 0.985 | 0.492 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 3 |
| oligos_6nt_mkv3_m5 | MA1944.2 | oligos_6nt_mkv3_m5 | ETV5::DRGX | 0.753 | 0.452 | 12 | 12 | 9 | 15 | 0.6000 | 0.7500 | 0.7500 | D | 3 |
| oligos_6nt_mkv3_m5 | MA1121.2 | oligos_6nt_mkv3_m5 | TEAD2 | 0.767 | 0.447 | 12 | 7 | 7 | 12 | 0.5833 | 0.5833 | 1.0000 | R | 4 |
| oligos_6nt_mkv3_m5 | MA0101.1 | oligos_6nt_mkv3_m5 | REL | 0.749 | 0.428 | 12 | 10 | 8 | 14 | 0.5714 | 0.6667 | 0.8000 | R | 4 |
| oligos_6nt_mkv3_m5 | MA1937.2 | oligos_6nt_mkv3_m5 | ERF::HOXB13 | 0.732 | 0.412 | 12 | 13 | 9 | 16 | 0.5625 | 0.7500 | 0.6923 | D | 3 |
Host name rsat Job started 2026-01-05.052154 Job done 2026-01-05.052204 Seconds 1.79 user 1.79 system 0.44 cuser 7.4 ; csystem 0.69