peak-motifs p53

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=29.08; evalue=8.3e-30

skrGrCATGYCCrGrCATGyCyms

SKRGRCATGYCYGGRCATGYCYMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skrGrCATGYCCrGrCATGyCyms

TP53 MA0106.3 D 18 0.7500 0.945 0.709 NA NA

TP73 MA0861.2 R 16 0.6667 0.853 0.569 NA NA

TP63 MA0525.2 R 18 0.7500 0.748 0.561 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 498 (64.34%)
Max nb of predicted sites per peak: 6
(chr19:53798420-53798777)
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=12.90; evalue=1.3e-13

yrgaCAAGTCys

SRGACTTGTCYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrgaCAAGTCys

XBP1 MA0844.2 D 10 0.7692 0.727 0.559 NA NA

Nr2e1 MA0676.1 D 9 0.7500 0.701 0.526 NA NA

TP73 MA0861.2 D 9 0.4737 0.911 0.432 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 228 (29.46%)
Max nb of predicted sites per peak: 4
(chr6:81245927-81246398)
Mean nb of predicted sites per peak: 1.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=23.20; evalue=6.3e-24

cyrGACATGTCyrg

CYRGACATGTCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyrGACATGTCyrg

TP73 MA0861.2 D 10 0.5000 0.949 0.474 NA NA

TP53 MA0106.3 R 11 0.5238 0.898 0.470 NA NA

TP63 MA0525.2 D 11 0.5238 0.889 0.466 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 295 (38.11%)
Max nb of predicted sites per peak: 6
(chr9:114907023-114907448)
Mean nb of predicted sites per peak: 2.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=6.62; evalue=2.4e-07

waCAAAGAAAaa

TTTTTCTTTGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCAAAGAAAaa

FOXD3 MA0041.3 D 12 0.8571 0.729 0.625 NA NA

SOX4 MA0867.3 D 8 0.6667 0.813 0.542 NA NA

ZNF384 MA1125.2 D 8 0.6667 0.806 0.537 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 122 (15.76%)
Max nb of predicted sites per peak: 9
(chr9:95562591-95562910)
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=6.09; evalue=8.1e-07

rwAAGGAAggrw

WYCCTTCCTTWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwAAGGAAggrw

Elf5 MA0136.4 D 8 0.6667 0.921 0.614 NA NA

Erg MA0474.4 D 10 0.8333 0.734 0.612 NA NA

GABPA MA0062.4 R 10 0.8333 0.721 0.601 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (13.70%)
Max nb of predicted sites per peak: 4
(chr20:46005870-46006271)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=29.28; evalue=5.2e-30

ycyrGACATGCCCagrc

GYCTGGGCATGTCYRGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycyrGACATGCCCagrc

TP53 MA0106.3 D 13 0.5909 0.897 0.530 NA NA

TP73 MA0861.2 D 12 0.5714 0.765 0.437 NA NA

ZNF416 MA1979.2 R 9 0.5000 0.864 0.432 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 431 (55.68%)
Max nb of predicted sites per peak: 14
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=29.28; evalue=5.2e-30

crrACATGCCCagrc

GYCTGGGCATGTYYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor crrACATGCCCagrc

TP53 MA0106.3 D 13 0.6500 0.914 0.594 NA NA

ZNF416 MA1979.2 R 9 0.5625 0.879 0.494 NA NA

TP73 MA0861.2 D 12 0.6316 0.748 0.472 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 439 (56.72%)
Max nb of predicted sites per peak: 14
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=29.28; evalue=5.2e-30

gyccrGACATGCCCagrc

GYCTGGGCATGTCYGGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gyccrGACATGCCCagrc

TP53 MA0106.3 D 13 0.5652 0.887 0.501 NA NA

TP73 MA0861.2 R 12 0.5455 0.840 0.458 NA NA

ZNF416 MA1979.2 R 9 0.4737 0.869 0.412 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 430 (55.56%)
Max nb of predicted sites per peak: 13
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=28.40; evalue=4e-29

ycygGACATGTCcrgr

YCYGGACATGTCCRGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycygGACATGTCcrgr

TP53 MA0106.3 D 12 0.5455 0.890 0.486 NA NA

TP73 MA0861.2 R 11 0.5238 0.900 0.471 NA NA

TP63 MA0525.2 D 12 0.5455 0.833 0.454 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 322 (41.60%)
Max nb of predicted sites per peak: 6
(chr7:121151205-121151434)
Mean nb of predicted sites per peak: 2.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=29.28; evalue=5.2e-30

cyrGGCATGTCyagr

YCTRGACATGCCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyrGGCATGTCyagr

TP73 MA0861.2 R 11 0.5500 0.858 0.472 NA NA

TP53 MA0106.3 R 11 0.5000 0.920 0.460 NA NA

TEAD1 MA0090.4 R 9 0.6000 0.702 0.421 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 383 (49.48%)
Max nb of predicted sites per peak: 13
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=13.80; evalue=1.6e-14

skgGACATGCCCAGrCawG

CWTGYCTGGGCATGTCCMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skgGACATGCCCAGrCawG

TP53 MA0106.3 D 16 0.7619 0.908 0.692 NA NA

TP73 MA0861.2 D 15 0.7500 0.772 0.579 NA NA

ZNF213 MA2121.1 D 11 0.5500 0.829 0.456 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 483 (62.40%)
Max nb of predicted sites per peak: 6
(chr19:53798420-53798777)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=5.15; evalue=7.1e-06

tgCCCAGACAtg

CATGTCTGGGCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tgCCCAGACAtg

ZNF416 MA1979.2 R 10 0.8333 0.884 0.737 NA NA

ZNF213 MA2121.1 D 11 0.8462 0.757 0.641 NA NA

Zfp809 MA2125.1 D 9 0.7500 0.762 0.572 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 299 (38.63%)
Max nb of predicted sites per peak: 3
(chr3:42864869-42865264)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=3.72; evalue=0.00019

yrGACAAGTCyv

BRGACTTGTCYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrGACAAGTCyv

XBP1 MA0844.2 D 10 0.7692 0.711 0.547 NA NA

MEIS3 MA0775.2 D 7 0.5833 0.740 0.431 NA NA

TP73 MA0861.2 D 9 0.4737 0.908 0.430 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 239 (30.88%)
Max nb of predicted sites per peak: 4
(chr8:124624563-124624939)
Mean nb of predicted sites per peak: 1.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=3.04; evalue=0.00091

grCAaGCCCrs

SYGGGCTTGYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grCAaGCCCrs

SP3 MA0746.3 D 11 1.0000 0.745 0.745 NA NA

KLF16 MA0741.1 D 11 1.0000 0.729 0.729 NA NA

ZNF682 MA1599.2 D 10 0.8333 0.842 0.701 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 282 (36.43%)
Max nb of predicted sites per peak: 11
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=1.63; evalue=0.023

srGACwTGCCyr

YRGGCAWGTCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGACwTGCCyr

HIC2 MA0738.2 D 6 0.5000 0.879 0.440 NA NA

Hic1 MA0739.2 D 7 0.5385 0.814 0.438 NA NA

TP53 MA0106.3 D 10 0.5000 0.837 0.419 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 283 (36.56%)
Max nb of predicted sites per peak: 4
(chr7:33327416-33327901)
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=23.01; evalue=9.8e-24

yccaGACATGCCCagrc

GYCTGGGCATGTCTGGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yccaGACATGCCCagrc

TP53 MA0106.3 D 13 0.5909 0.884 0.523 NA NA

ZNF416 MA1979.2 R 9 0.5000 0.880 0.440 NA NA

TP73 MA0861.2 D 12 0.5714 0.756 0.432 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 420 (54.26%)
Max nb of predicted sites per peak: 15
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.78

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=23.01; evalue=9.8e-24

gyctGGGCATGTCyrg

CYRGACATGCCCAGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gyctGGGCATGTCyrg

TP53 MA0106.3 R 13 0.6190 0.890 0.551 NA NA

ZNF416 MA1979.2 D 9 0.5294 0.875 0.463 NA NA

TP73 MA0861.2 R 12 0.6000 0.746 0.448 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 438 (56.59%)
Max nb of predicted sites per peak: 13
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=8.60; evalue=2.5e-09

yyCAGACATGTCTGrr

YYCAGACATGTCTGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCAGACATGTCTGrr

TP53 MA0106.3 D 12 0.5455 0.863 0.470 NA NA

TP73 MA0861.2 D 11 0.5238 0.887 0.465 NA NA

TP63 MA0525.2 D 12 0.5455 0.769 0.420 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 226 (29.20%)
Max nb of predicted sites per peak: 6
(chr7:121151205-121151434)
Mean nb of predicted sites per peak: 2.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=23.01; evalue=9.8e-24

cyrGGCATGTCTggr

YCCAGACATGCCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyrGGCATGTCTggr

TP73 MA0861.2 D 11 0.5500 0.842 0.463 NA NA

TP53 MA0106.3 R 11 0.5000 0.915 0.458 NA NA

TEAD1 MA0090.4 R 9 0.6000 0.711 0.427 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 358 (46.25%)
Max nb of predicted sites per peak: 11
(chr2:1492533-1493228)
Mean nb of predicted sites per peak: 1.75

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=11.29; evalue=5.1e-12

gyctGGGCATGCCCagrc

GYCTGGGCATGCCCAGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gyctGGGCATGCCCagrc

TP53 MA0106.3 D 13 0.5652 0.830 0.469 NA NA

ZNF416 MA1979.2 R 9 0.4737 0.865 0.410 NA NA

TP73 MA0861.2 R 12 0.5455 0.739 0.403 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 298 (38.50%)
Max nb of predicted sites per peak: 11
(chr13:20936776-20937061)
Mean nb of predicted sites per peak: 2.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: p53 (05/01/2026 05:24)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results