One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift3 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 372 410 59 93 51 117 68 76 298 464 c 0 0 0 1337 997 2794 116 2543 2438 2546 291 1290 1087 g 0 0 0 982 1340 143 2750 377 346 302 2612 1060 1140 t 0 0 0 366 310 61 98 86 156 141 78 409 366

MA1564.2_shift2 (SP9)
; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=1/25; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.606792; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA0162.5_shift4 (EGR1)
; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=2/25; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.596297; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.584478; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1513.2_shift2 (KLF15)
; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=4/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.568985; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA0131.3_shift4 (HINFP)
; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=5/25; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.565927; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=6/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.55944; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.555856; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=8/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.555144; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=9/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550314; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=10/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.545518; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_6nt_mkv4_m1 versus MA1961.2_rc (PATZ1_rc); m=11/25; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.545297; -sCCCCkCCCCs- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0

MA0733.2_shift4 (EGR4)
; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=12/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.545142; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=13/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.544991; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA0746.3_shift1 (SP3)
; oligos_6nt_mkv4_m1 versus MA0746.3 (SP3); m=14/25; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.539661; -rCCACGCCCmC- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=15/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536192; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0732.2_shift4 (EGR3)
; oligos_6nt_mkv4_m1 versus MA0732.2 (EGR3); m=16/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534391; ----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_6nt_mkv4_m1 versus MA0516.3_rc (SP2_rc); m=17/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.531318; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_6nt_mkv4_m1 versus MA0079.5_rc (SP1_rc); m=18/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.525542; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA1517.2_shift2 (KLF6)
; oligos_6nt_mkv4_m1 versus MA1517.2 (KLF6); m=19/25; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.519698; --cCACRCCCm-- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0

MA1516.2_shift0 (KLF3)
; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=20/25; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.483577; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0

MA1727.2_rc_shift2 (ZNF417_rc)
; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=21/25; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.472601; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0

MA0039.5_shift2 (KLF4)
; oligos_6nt_mkv4_m1 versus MA0039.5 (KLF4); m=22/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.448923; --CCCCACCC--- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA0471.3_rc_shift1 (E2F6_rc)
; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=23/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.420916; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

MA0865.3_shift1 (E2F8)
; oligos_6nt_mkv4_m1 versus MA0865.3 (E2F8); m=24/25; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.412997; -tTCCCGCcA--- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=25/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.406837; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 372 410 59 93 51 117 68 76 298 464 c 0 0 0 1337 997 2794 116 2543 2438 2546 291 1290 1087 g 0 0 0 982 1340 143 2750 377 346 302 2612 1060 1140 t 0 0 0 366 310 61 98 86 156 141 78 409 366
MA1564.2_shift2 (SP9)				; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=1/25; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.606792; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA0162.5_shift4 (EGR1)				; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=2/25; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.596297; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.584478; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1513.2_shift2 (KLF15)				; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=4/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.568985; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA0131.3_shift4 (HINFP)				; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=5/25; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.565927; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=6/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.55944; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.555856; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=8/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.555144; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=9/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550314; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=10/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.545518; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_6nt_mkv4_m1 versus MA1961.2_rc (PATZ1_rc); m=11/25; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.545297; -sCCCCkCCCCs- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0
MA0733.2_shift4 (EGR4)				; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=12/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.545142; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=13/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.544991; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA0746.3_shift1 (SP3)				; oligos_6nt_mkv4_m1 versus MA0746.3 (SP3); m=14/25; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.539661; -rCCACGCCCmC- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=15/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536192; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0732.2_shift4 (EGR3)				; oligos_6nt_mkv4_m1 versus MA0732.2 (EGR3); m=16/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534391; ----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_6nt_mkv4_m1 versus MA0516.3_rc (SP2_rc); m=17/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.531318; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_6nt_mkv4_m1 versus MA0079.5_rc (SP1_rc); m=18/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.525542; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA1517.2_shift2 (KLF6)				; oligos_6nt_mkv4_m1 versus MA1517.2 (KLF6); m=19/25; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.519698; --cCACRCCCm-- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0
MA1516.2_shift0 (KLF3)				; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=20/25; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.483577; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0
MA1727.2_rc_shift2 (ZNF417_rc)				; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=21/25; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.472601; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0
MA0039.5_shift2 (KLF4)				; oligos_6nt_mkv4_m1 versus MA0039.5 (KLF4); m=22/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.448923; --CCCCACCC--- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA0471.3_rc_shift1 (E2F6_rc)				; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=23/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.420916; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0
MA0865.3_shift1 (E2F8)				; oligos_6nt_mkv4_m1 versus MA0865.3 (E2F8); m=24/25; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.412997; -tTCCCGCcA--- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=25/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.406837; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0