/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf
		file1	1	11	3949
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m1 MA0052.5 oligos_7nt_mkv5_m1 MEF2A 0.856 0.778 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv5_m1 MA2124.1 oligos_7nt_mkv5_m1 Hmga1 0.997 0.725 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m1 MA0773.1 oligos_7nt_mkv5_m1 MEF2D 0.761 0.697 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m1 MA0497.2 oligos_7nt_mkv5_m1 MEF2C 0.818 0.682 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_7nt_mkv5_m1 MA0660.1 oligos_7nt_mkv5_m1 MEF2B 0.741 0.679 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m1 MA1125.2 oligos_7nt_mkv5_m1 ZNF384 0.777 0.565 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv5_m1 MA0148.5 oligos_7nt_mkv5_m1 FOXA1 0.741 0.539 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m1 MA0108.3 oligos_7nt_mkv5_m1 TBP 0.839 0.534 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_7nt_mkv5_m1 MA1563.2 oligos_7nt_mkv5_m1 SOX18 0.725 0.527 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv5_m1 MA0047.4 oligos_7nt_mkv5_m1 FOXA2 0.723 0.526 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv5_m1 MA2118.1 oligos_7nt_mkv5_m1 FOXS1 0.715 0.520 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv5_m1 MA0032.2 oligos_7nt_mkv5_m1 FOXC1 0.743 0.514 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m1 MA0613.1 oligos_7nt_mkv5_m1 FOXG1 0.701 0.510 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m1 MA0845.1 oligos_7nt_mkv5_m1 FOXB1 0.722 0.500 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m1 MA0033.2 oligos_7nt_mkv5_m1 FOXL1 0.770 0.490 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0901.3 oligos_7nt_mkv5_m1 HOXB13 0.904 0.487 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA1606.2 oligos_7nt_mkv5_m1 Foxf1 0.756 0.481 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0913.3 oligos_7nt_mkv5_m1 HOXD9 0.878 0.473 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA1103.3 oligos_7nt_mkv5_m1 FOXK2 0.737 0.469 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0899.2 oligos_7nt_mkv5_m1 HOXA10 0.870 0.469 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA1473.2 oligos_7nt_mkv5_m1 CDX4 0.868 0.467 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0481.4 oligos_7nt_mkv5_m1 FOXP1 0.733 0.466 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0031.2 oligos_7nt_mkv5_m1 FOXD1 0.732 0.466 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0848.1 oligos_7nt_mkv5_m1 FOXO4 0.731 0.465 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0868.3 oligos_7nt_mkv5_m1 SOX8 0.730 0.465 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_7nt_mkv5_m1 MA1683.2 oligos_7nt_mkv5_m1 FOXA3 0.730 0.464 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0042.2 oligos_7nt_mkv5_m1 FOXI1 0.730 0.464 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA2117.1 oligos_7nt_mkv5_m1 FOXP4 0.724 0.461 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0850.1 oligos_7nt_mkv5_m1 FOXP3 0.723 0.460 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0852.3 oligos_7nt_mkv5_m1 FOXK1 0.721 0.459 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0157.4 oligos_7nt_mkv5_m1 Foxo3 0.720 0.458 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0849.1 oligos_7nt_mkv5_m1 FOXO6 0.715 0.455 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0601.2 oligos_7nt_mkv5_m1 Arid3b 0.707 0.450 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv5_m1 MA0480.3 oligos_7nt_mkv5_m1 Foxo1 0.703 0.447 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m1 MA0878.3 oligos_7nt_mkv5_m1 CDX1 0.888 0.444 11 10 7 14 0.5000 0.6364 0.7000 R 4
oligos_7nt_mkv5_m1 MA1607.2 oligos_7nt_mkv5_m1 Foxl2 0.713 0.439 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m1 MA0757.2 oligos_7nt_mkv5_m1 ONECUT3 0.822 0.438 11 12 8 15 0.5333 0.7273 0.6667 R -4
oligos_7nt_mkv5_m1 MA0907.2 oligos_7nt_mkv5_m1 HOXC13 0.798 0.430 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0905.2 oligos_7nt_mkv5_m1 HOXC10 0.785 0.423 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0908.2 oligos_7nt_mkv5_m1 HOXD11 0.784 0.422 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0151.1 oligos_7nt_mkv5_m1 Arid3a 0.767 0.418 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv5_m1 MA0485.3 oligos_7nt_mkv5_m1 HOXC9 0.774 0.417 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0909.4 oligos_7nt_mkv5_m1 Hoxd13 0.833 0.416 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv5_m1 MA0650.4 oligos_7nt_mkv5_m1 Hoxa13 0.897 0.414 11 8 6 13 0.4615 0.5455 0.7500 R 5
oligos_7nt_mkv5_m1 MA1503.2 oligos_7nt_mkv5_m1 HOXB9 0.763 0.411 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m1 MA0465.3 oligos_7nt_mkv5_m1 CDX2 0.881 0.407 11 8 6 13 0.4615 0.5455 0.7500 R 5
oligos_7nt_mkv5_m1 MA0911.2 oligos_7nt_mkv5_m1 Hoxa11 0.752 0.405 11 9 7 13 0.5385 0.6364 0.7778 R 4 
 Host name	rsat
 Job started	2026-01-05.075346
 Job done	2026-01-05.075422
 Seconds	6.08
	user	6.09
	system	2.56
	cuser	24.34
;	csystem	2.63