/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
		file1	1	11	2371
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m2 MA0162.5 oligos_7nt_mkv5_m2 EGR1 0.798 0.725 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv5_m2 MA0733.2 oligos_7nt_mkv5_m2 EGR4 0.788 0.657 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m2 MA0732.2 oligos_7nt_mkv5_m2 EGR3 0.769 0.641 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m2 MA0747.2 oligos_7nt_mkv5_m2 SP8 0.750 0.625 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv5_m2 MA1564.2 oligos_7nt_mkv5_m2 SP9 0.831 0.623 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv5_m2 MA0472.2 oligos_7nt_mkv5_m2 EGR2 0.734 0.612 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m2 MA1512.2 oligos_7nt_mkv5_m2 KLF11 0.792 0.594 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv5_m2 MA0742.2 oligos_7nt_mkv5_m2 KLF12 0.842 0.561 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA0746.3 oligos_7nt_mkv5_m2 SP3 0.799 0.553 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m2 MA0685.2 oligos_7nt_mkv5_m2 SP4 0.826 0.551 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA1959.2 oligos_7nt_mkv5_m2 KLF7 0.941 0.549 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_7nt_mkv5_m2 MA0740.2 oligos_7nt_mkv5_m2 KLF14 0.822 0.548 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA1511.2 oligos_7nt_mkv5_m2 KLF10 0.819 0.546 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA0516.3 oligos_7nt_mkv5_m2 SP2 0.813 0.542 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA1517.2 oligos_7nt_mkv5_m2 KLF6 0.808 0.539 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_7nt_mkv5_m2 MA2099.1 oligos_7nt_mkv5_m2 ZNF770 0.740 0.538 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m2 MA0741.1 oligos_7nt_mkv5_m2 KLF16 0.776 0.537 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m2 MA1102.3 oligos_7nt_mkv5_m2 CTCFL 0.733 0.533 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv5_m2 MA1513.2 oligos_7nt_mkv5_m2 KLF15 0.911 0.532 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m2 MA1522.2 oligos_7nt_mkv5_m2 MAZ 0.717 0.521 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_7nt_mkv5_m2 MA0079.5 oligos_7nt_mkv5_m2 SP1 0.779 0.519 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m2 MA1515.2 oligos_7nt_mkv5_m2 KLF2 0.887 0.518 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m2 MA0493.3 oligos_7nt_mkv5_m2 KLF1 0.879 0.513 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_7nt_mkv5_m2 MA1961.2 oligos_7nt_mkv5_m2 PATZ1 0.735 0.509 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv5_m2 MA0599.1 oligos_7nt_mkv5_m2 KLF5 0.810 0.498 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_7nt_mkv5_m2 MA2126.1 oligos_7nt_mkv5_m2 Zfp961 0.843 0.492 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_7nt_mkv5_m2 MA1965.2 oligos_7nt_mkv5_m2 SP5 0.882 0.481 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv5_m2 MA0748.3 oligos_7nt_mkv5_m2 YY2 0.741 0.471 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_7nt_mkv5_m2 MA0139.2 oligos_7nt_mkv5_m2 CTCF 0.740 0.462 11 15 10 16 0.6250 0.9091 0.6667 R 1
oligos_7nt_mkv5_m2 MA1516.2 oligos_7nt_mkv5_m2 KLF3 0.902 0.451 11 10 7 14 0.5000 0.6364 0.7000 D -3
oligos_7nt_mkv5_m2 MA1653.2 oligos_7nt_mkv5_m2 ZNF148 0.713 0.439 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_7nt_mkv5_m2 MA0039.5 oligos_7nt_mkv5_m2 KLF4 0.730 0.426 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m2 MA1727.2 oligos_7nt_mkv5_m2 ZNF417 0.831 0.416 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_7nt_mkv5_m2 MA1578.2 oligos_7nt_mkv5_m2 VEZF1 0.741 0.404 11 6 6 11 0.5455 0.5455 1.0000 D 4 
 Host name	rsat
 Job started	2026-01-05.075422
 Job done	2026-01-05.075435
 Seconds	1.9
	user	1.9
	system	0.63
	cuser	8.99
;	csystem	1.07