One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift1 ; 29 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift1 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -rrAAGAGGAAGwr ; Alignment reference a 0 549 620 1449 1434 90 1528 75 79 1582 1543 114 459 554 c 0 295 280 88 51 75 32 24 29 67 67 102 363 295 g 0 588 565 128 147 1517 110 1583 1582 48 61 1453 423 541 t 0 282 249 49 82 32 44 32 24 17 43 45 469 324
MA0687.2_shift1 (SPIC)				; oligos_7nt_mkv5_m3 versus MA0687.2 (SPIC); m=1/28; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.866283; -aAAWsmGGAAGTa ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0
MA0080.7_shift2 (Spi1)				; oligos_7nt_mkv5_m3 versus MA0080.7 (Spi1); m=2/28; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.796895; --aAAGAGGAAGTG ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0
MA0081.3_rc_shift2 (SPIB_rc)				; oligos_7nt_mkv5_m3 versus MA0081.3_rc (SPIB_rc); m=3/28; ncol2=13; w=0; offset=1; strand=R; shift=2; score=0.755523; --aaaGAGGAAGTG ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0
MA1954.2_shift0 (FOXO1::ELK1)				; oligos_7nt_mkv5_m3 versus MA1954.2 (FOXO1::ELK1); m=4/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.692015; rwmAACAGGAAGt- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0
MA1953.2_shift0 (FOXO1::ELF1)				; oligos_7nt_mkv5_m3 versus MA1953.2 (FOXO1::ELF1); m=5/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.675677; rtmAACAGGAAgt- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0
MA1956.2_shift0 (FOXO1::FLI1)				; oligos_7nt_mkv5_m3 versus MA1956.2 (FOXO1::FLI1); m=6/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667944; GwmAACAGGAAGT- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0
MA1955.2_shift0 (FOXO1::ELK3)				; oligos_7nt_mkv5_m3 versus MA1955.2 (FOXO1::ELK3); m=7/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667526; rwmAACAGGAAGt- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0
MA1942.2_shift2 (ETV2::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1942.2 (ETV2::FOXI1); m=8/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.666571; --aaACAGGAwRy- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; oligos_7nt_mkv5_m3 versus MA1952.2 (FOXJ2::ELF1); m=9/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.663708; --aaACmGGAAGw- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0
MA1950.2_shift1 (FLI1::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1950.2 (FLI1::FOXI1); m=10/28; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.644442; -taAACAGGAwr-- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0
MA0474.4_shift4 (Erg)				; oligos_7nt_mkv5_m3 versus MA0474.4 (Erg); m=11/28; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.62764; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0
MA0062.4_rc_shift4 (GABPA_rc)				; oligos_7nt_mkv5_m3 versus MA0062.4_rc (GABPA_rc); m=12/28; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.620258; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0
MA1935.2_shift2 (ERF::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1935.2 (ERF::FOXI1); m=13/28; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.607185; --aaACmGGAAr-- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0
MA1946.2_shift0 (ETV5::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1946.2 (ETV5::FOXI1); m=14/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.604622; GtMAACMGGAwG-- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0
MA1936.2_shift0 (ERF::FOXO1)				; oligos_7nt_mkv5_m3 versus MA1936.2 (ERF::FOXO1); m=15/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.598069; rwmAACAGGAAr-- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; oligos_7nt_mkv5_m3 versus MA0640.3_rc (ELF3_rc); m=16/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.585588; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0
MA0598.4_rc_shift5 (EHF_rc)				; oligos_7nt_mkv5_m3 versus MA0598.4_rc (EHF_rc); m=17/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.579413; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0
MA2332.1_shift4 (ZNF175)				; oligos_7nt_mkv5_m3 versus MA2332.1 (ZNF175); m=18/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.573613; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0
MA0761.3_shift4 (ETV1)				; oligos_7nt_mkv5_m3 versus MA0761.3 (ETV1); m=19/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.561644; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0
MA1992.2_shift5 (Ikzf3)				; oligos_7nt_mkv5_m3 versus MA1992.2 (Ikzf3); m=20/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.555769; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0
MA0645.2_shift5 (ETV6)				; oligos_7nt_mkv5_m3 versus MA0645.2 (ETV6); m=21/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.553056; -----sCGGAAGTr ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0
MA0473.4_shift5 (ELF1)				; oligos_7nt_mkv5_m3 versus MA0473.4 (ELF1); m=22/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.549522; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0
MA1708.2_shift5 (ETV7)				; oligos_7nt_mkv5_m3 versus MA1708.2 (ETV7); m=23/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.54768; -----scGGAARTr ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0
MA1508.2_shift3 (IKZF1)				; oligos_7nt_mkv5_m3 versus MA1508.2 (IKZF1); m=24/28; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.532871; ---AACAGGAA--- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0
MA0136.4_shift5 (Elf5)				; oligos_7nt_mkv5_m3 versus MA0136.4 (Elf5); m=25/28; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.524553; -----AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0
MA1947.2_shift0 (ETV5::FOXO1)				; oligos_7nt_mkv5_m3 versus MA1947.2 (ETV5::FOXO1); m=26/28; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.482231; rtmAACAGGA---- ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0
MA2326.1_shift6 (IKZF2)				; oligos_7nt_mkv5_m3 versus MA2326.1 (IKZF2); m=27/28; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.460809; ------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0
MA0508.4_rc_shift5 (PRDM1_rc)				; oligos_7nt_mkv5_m3 versus MA0508.4_rc (PRDM1_rc); m=28/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.431081; -----GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0