One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift3 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift3 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---twCTTTTTCwh ; Alignment reference a 0 0 0 339 479 139 106 163 104 111 73 86 472 454 c 0 0 0 313 342 1448 25 41 35 38 31 1507 366 434 g 0 0 0 353 307 41 44 51 33 39 18 29 167 293 t 0 0 0 680 557 57 1510 1430 1513 1497 1563 63 680 504

MA1125.2_rc_shift3 (ZNF384_rc)
; oligos_7nt_mkv5_m5 versus MA1125.2_rc (ZNF384_rc); m=1/9; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.561373; ---ttTTTTTT--- ; cor=; Ncor= a 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0

MA1623.2_rc_shift2 (Stat2_rc)
; oligos_7nt_mkv5_m5 versus MA1623.2_rc (Stat2_rc); m=2/9; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.558784; --TTTCTGTTTc-- ; cor=; Ncor= a 0 0 141.0 69.0 47.0 55.0 588.0 242.0 62.0 77.0 161.0 397.0 0 0 c 0 0 157.0 98.0 163.0 3707.0 74.0 524.0 87.0 71.0 168.0 2287.0 0 0 g 0 0 147.0 45.0 49.0 45.0 151.0 2907.0 72.0 75.0 76.0 306.0 0 0 t 0 0 3514.0 3747.0 3700.0 152.0 3146.0 286.0 3738.0 3736.0 3554.0 969.0 0 0

MA0606.3_rc_shift6 (Nfat5_rc)
; oligos_7nt_mkv5_m5 versus MA0606.3_rc (Nfat5_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.51179; ------TTTTCCAT ; cor=; Ncor= a 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 c 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 g 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 t 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0

MA0508.4_shift5 (PRDM1)
; oligos_7nt_mkv5_m5 versus MA0508.4 (PRDM1); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.506922; -----CTTTCTC-- ; cor=; Ncor= a 0 0 0 0 0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 0 0 c 0 0 0 0 0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 0 0 g 0 0 0 0 0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 0 0 t 0 0 0 0 0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 0 0

MA0517.2_shift0 (STAT1::STAT2)
; oligos_7nt_mkv5_m5 versus MA0517.2 (STAT1::STAT2); m=5/9; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.506829; AGTTTCrkTTYCy- ; cor=; Ncor= a 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 c 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 g 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 t 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0

MA1525.3_rc_shift6 (NFATC4_rc)
; oligos_7nt_mkv5_m5 versus MA1525.3_rc (NFATC4_rc); m=6/9; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.495057; ------wkTTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0

MA0624.3_rc_shift8 (Nfatc1_rc)
; oligos_7nt_mkv5_m5 versus MA0624.3_rc (Nfatc1_rc); m=7/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.440345; --------TTTCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0

MA0625.3_rc_shift8 (NFATC3_rc)
; oligos_7nt_mkv5_m5 versus MA0625.3_rc (NFATC3_rc); m=8/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.427359; --------tTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0

MA0442.3_rc_shift5 (SOX10_rc)
; oligos_7nt_mkv5_m5 versus MA0442.3_rc (SOX10_rc); m=9/9; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.420687; -----CTTTGT--- ; cor=; Ncor= a 0 0 0 0 0 20.0 61.0 39.0 12.0 52.0 25.0 0 0 0 c 0 0 0 0 0 2012.0 12.0 20.0 7.0 11.0 3.0 0 0 0 g 0 0 0 0 0 13.0 23.0 28.0 7.0 1989.0 4.0 0 0 0 t 0 0 0 0 0 10.0 1959.0 1968.0 2029.0 3.0 2023.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift3 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---twCTTTTTCwh ; Alignment reference a 0 0 0 339 479 139 106 163 104 111 73 86 472 454 c 0 0 0 313 342 1448 25 41 35 38 31 1507 366 434 g 0 0 0 353 307 41 44 51 33 39 18 29 167 293 t 0 0 0 680 557 57 1510 1430 1513 1497 1563 63 680 504
MA1125.2_rc_shift3 (ZNF384_rc)				; oligos_7nt_mkv5_m5 versus MA1125.2_rc (ZNF384_rc); m=1/9; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.561373; ---ttTTTTTT--- ; cor=; Ncor= a 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0
MA1623.2_rc_shift2 (Stat2_rc)				; oligos_7nt_mkv5_m5 versus MA1623.2_rc (Stat2_rc); m=2/9; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.558784; --TTTCTGTTTc-- ; cor=; Ncor= a 0 0 141.0 69.0 47.0 55.0 588.0 242.0 62.0 77.0 161.0 397.0 0 0 c 0 0 157.0 98.0 163.0 3707.0 74.0 524.0 87.0 71.0 168.0 2287.0 0 0 g 0 0 147.0 45.0 49.0 45.0 151.0 2907.0 72.0 75.0 76.0 306.0 0 0 t 0 0 3514.0 3747.0 3700.0 152.0 3146.0 286.0 3738.0 3736.0 3554.0 969.0 0 0
MA0606.3_rc_shift6 (Nfat5_rc)				; oligos_7nt_mkv5_m5 versus MA0606.3_rc (Nfat5_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.51179; ------TTTTCCAT ; cor=; Ncor= a 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 c 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 g 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 t 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0
MA0508.4_shift5 (PRDM1)				; oligos_7nt_mkv5_m5 versus MA0508.4 (PRDM1); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.506922; -----CTTTCTC-- ; cor=; Ncor= a 0 0 0 0 0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 0 0 c 0 0 0 0 0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 0 0 g 0 0 0 0 0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 0 0 t 0 0 0 0 0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 0 0
MA0517.2_shift0 (STAT1::STAT2)				; oligos_7nt_mkv5_m5 versus MA0517.2 (STAT1::STAT2); m=5/9; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.506829; AGTTTCrkTTYCy- ; cor=; Ncor= a 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 c 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 g 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 t 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0
MA1525.3_rc_shift6 (NFATC4_rc)				; oligos_7nt_mkv5_m5 versus MA1525.3_rc (NFATC4_rc); m=6/9; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.495057; ------wkTTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0
MA0624.3_rc_shift8 (Nfatc1_rc)				; oligos_7nt_mkv5_m5 versus MA0624.3_rc (Nfatc1_rc); m=7/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.440345; --------TTTCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0
MA0625.3_rc_shift8 (NFATC3_rc)				; oligos_7nt_mkv5_m5 versus MA0625.3_rc (NFATC3_rc); m=8/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.427359; --------tTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0
MA0442.3_rc_shift5 (SOX10_rc)				; oligos_7nt_mkv5_m5 versus MA0442.3_rc (SOX10_rc); m=9/9; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.420687; -----CTTTGT--- ; cor=; Ncor= a 0 0 0 0 0 20.0 61.0 39.0 12.0 52.0 25.0 0 0 0 c 0 0 0 0 0 2012.0 12.0 20.0 7.0 11.0 3.0 0 0 0 g 0 0 0 0 0 13.0 23.0 28.0 7.0 1989.0 4.0 0 0 0 t 0 0 0 0 0 10.0 1959.0 1968.0 2029.0 3.0 2023.0 0 0 0