/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf
		file1	1	17	1996
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m2 MA0081.3 positions_6nt_m2 SPIB 0.877 0.671 17 13 13 17 0.7647 0.7647 1.0000 D 1
positions_6nt_m2 MA0080.7 positions_6nt_m2 Spi1 0.835 0.639 17 13 13 17 0.7647 0.7647 1.0000 R 1
positions_6nt_m2 MA0687.2 positions_6nt_m2 SPIC 0.770 0.589 17 13 13 17 0.7647 0.7647 1.0000 R 2
positions_6nt_m2 MA0641.1 positions_6nt_m2 ELF4 0.753 0.532 17 12 12 17 0.7059 0.7059 1.0000 R 2
positions_6nt_m2 MA1952.2 positions_6nt_m2 FOXJ2::ELF1 0.756 0.489 17 11 11 17 0.6471 0.6471 1.0000 R 3
positions_6nt_m2 MA0062.4 positions_6nt_m2 GABPA 0.818 0.481 17 10 10 17 0.5882 0.5882 1.0000 D 2
positions_6nt_m2 MA0474.4 positions_6nt_m2 Erg 0.799 0.470 17 10 10 17 0.5882 0.5882 1.0000 R 2
positions_6nt_m2 MA0598.4 positions_6nt_m2 EHF 0.885 0.469 17 9 9 17 0.5294 0.5294 1.0000 D 2
positions_6nt_m2 MA1708.2 positions_6nt_m2 ETV7 0.876 0.464 17 9 9 17 0.5294 0.5294 1.0000 R 2
positions_6nt_m2 MA0640.3 positions_6nt_m2 ELF3 0.873 0.462 17 9 9 17 0.5294 0.5294 1.0000 D 2
positions_6nt_m2 MA0645.2 positions_6nt_m2 ETV6 0.860 0.456 17 9 9 17 0.5294 0.5294 1.0000 R 2
positions_6nt_m2 MA1957.1 positions_6nt_m2 HOXB2::ELK1 0.714 0.451 17 14 12 19 0.6316 0.7059 0.8571 R -2
positions_6nt_m2 MA1652.2 positions_6nt_m2 ZKSCAN5 0.851 0.451 17 9 9 17 0.5294 0.5294 1.0000 R 0
positions_6nt_m2 MA0473.4 positions_6nt_m2 ELF1 0.848 0.449 17 9 9 17 0.5294 0.5294 1.0000 R 2
positions_6nt_m2 MA1483.3 positions_6nt_m2 ELF2 0.763 0.449 17 10 10 17 0.5882 0.5882 1.0000 R 3
positions_6nt_m2 MA1992.2 positions_6nt_m2 Ikzf3 0.825 0.437 17 9 9 17 0.5294 0.5294 1.0000 R 2
positions_6nt_m2 MA2340.1 positions_6nt_m2 Zbtb2 0.740 0.436 17 10 10 17 0.5882 0.5882 1.0000 R 2
positions_6nt_m2 MA1935.2 positions_6nt_m2 ERF::FOXI1 0.740 0.435 17 10 10 17 0.5882 0.5882 1.0000 R 4
positions_6nt_m2 MA2329.1 positions_6nt_m2 ZBTB11 0.814 0.431 17 9 9 17 0.5294 0.5294 1.0000 D 2
positions_6nt_m2 MA2332.1 positions_6nt_m2 ZNF175 0.805 0.426 17 9 9 17 0.5294 0.5294 1.0000 R 3
positions_6nt_m2 MA0136.4 positions_6nt_m2 Elf5 0.900 0.424 17 8 8 17 0.4706 0.4706 1.0000 R 3
positions_6nt_m2 MA0750.3 positions_6nt_m2 ZBTB7A 0.795 0.421 17 9 9 17 0.5294 0.5294 1.0000 R 2
positions_6nt_m2 MA0761.3 positions_6nt_m2 ETV1 0.789 0.418 17 9 9 17 0.5294 0.5294 1.0000 R 3
positions_6nt_m2 MA0076.3 positions_6nt_m2 ELK4 0.775 0.410 17 9 9 17 0.5294 0.5294 1.0000 D 2 
 Host name	rsat
 Job started	2026-01-05.075309
 Job done	2026-01-05.075329
 Seconds	3.61
	user	3.61
	system	1.11
	cuser	14.88
;	csystem	1.14