One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift2 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --yycACTTCCytcttyyy ; Alignment reference a 0 0 441 415 262 1733 33 62 36 57 37 227 286 287 271 282 294 418 419 c 0 0 544 588 1274 105 1809 80 62 1843 1830 1108 473 945 372 435 748 582 566 g 0 0 401 408 219 84 74 92 70 32 29 144 236 291 244 305 406 420 478 t 0 0 610 585 241 74 80 1762 1828 64 100 517 1001 473 1109 974 548 576 533

MA0081.3_shift3 (SPIB)
; positions_6nt_m2 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.670555; ---tCACTTCCTCttt--- ; cor=; Ncor= a 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 0 c 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 0 g 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 0 t 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0 0

MA0080.7_rc_shift3 (Spi1_rc)
; positions_6nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=1; strand=R; shift=3; score=0.63891; ---cCACTTCCTCTTt--- ; cor=; Ncor= a 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 0 c 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 0 g 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 0 t 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0 0

MA0687.2_rc_shift4 (SPIC_rc)
; positions_6nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=2; strand=R; shift=4; score=0.58868; ----tACTTCCksWTTt-- ; cor=; Ncor= a 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 0 c 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 0 g 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 0 t 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0 0

MA0641.1_rc_shift4 (ELF4_rc)
; positions_6nt_m2 versus MA0641.1_rc (ELF4_rc); m=4/24; ncol2=12; w=0; offset=2; strand=R; shift=4; score=0.531505; ----yACTTCCGGGTt--- ; cor=; Ncor= a 0 0 0 0 113.0 979.0 6.0 4.0 2.0 2.0 0.0 0.0 1.0 106.0 149.0 192.0 0 0 0 c 0 0 0 0 463.0 28.0 1207.0 2.0 2.0 1226.0 1226.0 6.0 105.0 75.0 15.0 160.0 0 0 0 g 0 0 0 0 83.0 56.0 18.0 5.0 0.0 0.0 0.0 997.0 990.0 930.0 73.0 109.0 0 0 0 t 0 0 0 0 403.0 4.0 43.0 737.0 739.0 0.0 1.0 54.0 17.0 198.0 705.0 598.0 0 0 0

MA1952.2_rc_shift5 (FOXJ2::ELF1_rc)
; positions_6nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/24; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.488953; -----wCTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 0 c 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 0 g 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 0 t 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0 0

MA0062.4_shift4 (GABPA)
; positions_6nt_m2 versus MA0062.4 (GABPA); m=6/24; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.481264; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 0 c 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 0 g 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 0 t 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0 0

MA0474.4_rc_shift4 (Erg_rc)
; positions_6nt_m2 versus MA0474.4_rc (Erg_rc); m=7/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.469729; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 0 c 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 0 g 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 0 t 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0 0

MA0598.4_shift4 (EHF)
; positions_6nt_m2 versus MA0598.4 (EHF); m=8/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.468711; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 0 c 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 0 g 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 0 t 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0 0

MA1708.2_rc_shift4 (ETV7_rc)
; positions_6nt_m2 versus MA1708.2_rc (ETV7_rc); m=9/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.463677; ----yAYTTCCgs------ ; cor=; Ncor= a 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 0 c 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 0 g 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 0 t 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0 0

MA0640.3_shift4 (ELF3)
; positions_6nt_m2 versus MA0640.3 (ELF3); m=10/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.462155; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 0 c 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 0 g 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 0 t 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0 0

MA0645.2_rc_shift4 (ETV6_rc)
; positions_6nt_m2 versus MA0645.2_rc (ETV6_rc); m=11/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.455512; ----yACTTCCGs------ ; cor=; Ncor= a 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 0 c 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 0 g 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 0 t 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0 0

MA1957.1_rc_shift0 (HOXB2::ELK1_rc)
; positions_6nt_m2 versus MA1957.1_rc (HOXB2::ELK1_rc); m=12/24; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.450743; TAAykACTTCCGgy----- ; cor=; Ncor= a 218.0 1338.0 1338.0 80.0 163.0 1338.0 3.0 88.0 4.0 7.0 6.0 19.0 45.0 130.0 0 0 0 0 0 c 161.0 47.0 38.0 524.0 195.0 22.0 1338.0 18.0 0.0 1338.0 1338.0 6.0 319.0 602.0 0 0 0 0 0 g 64.0 352.0 48.0 43.0 799.0 159.0 24.0 0.0 0.0 0.0 0.0 1338.0 1019.0 94.0 0 0 0 0 0 t 1338.0 88.0 38.0 814.0 539.0 11.0 48.0 1338.0 1338.0 0.0 8.0 54.0 117.0 737.0 0 0 0 0 0

MA1652.2_rc_shift2 (ZKSCAN5_rc)
; positions_6nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=13/24; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.450648; --cTCACyTCC-------- ; cor=; Ncor= a 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 0 c 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 0 g 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 0 t 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0 0

MA0473.4_rc_shift4 (ELF1_rc)
; positions_6nt_m2 versus MA0473.4_rc (ELF1_rc); m=14/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.448943; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 0 c 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 0 g 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 0 t 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0 0

MA1483.3_rc_shift5 (ELF2_rc)
; positions_6nt_m2 versus MA1483.3_rc (ELF2_rc); m=15/24; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.44864; -----ACTTCCGGkw---- ; cor=; Ncor= a 0 0 0 0 0 84429.0 382.0 1811.0 159.0 20.0 18.0 12.0 228.0 13118.0 39326.0 0 0 0 0 c 0 0 0 0 0 4604.0 84429.0 41.0 10.0 84429.0 84429.0 231.0 14852.0 6180.0 10017.0 0 0 0 0 g 0 0 0 0 0 12976.0 5077.0 58.0 51.0 16.0 22.0 84429.0 84429.0 54007.0 12629.0 0 0 0 0 t 0 0 0 0 0 6161.0 28882.0 84429.0 84429.0 21.0 15.0 13644.0 7116.0 30422.0 84429.0 0 0 0 0

MA1992.2_rc_shift4 (Ikzf3_rc)
; positions_6nt_m2 versus MA1992.2_rc (Ikzf3_rc); m=16/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.436606; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 0 c 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 0 g 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 0 t 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0 0

MA2340.1_rc_shift4 (Zbtb2_rc)
; positions_6nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=17/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.435503; ----CaCTTCCGGT----- ; cor=; Ncor= a 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 0 0 c 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 0 0 g 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 0 0 t 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0 0 0

MA1935.2_rc_shift6 (ERF::FOXI1_rc)
; positions_6nt_m2 versus MA1935.2_rc (ERF::FOXI1_rc); m=18/24; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.435493; ------yTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 0 c 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 0 g 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 0 t 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0 0

MA2329.1_shift4 (ZBTB11)
; positions_6nt_m2 versus MA2329.1 (ZBTB11); m=19/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.430684; ----CACTTCCGG------ ; cor=; Ncor= a 0 0 0 0 128.0 1935.0 13.0 79.0 38.0 29.0 15.0 25.0 44.0 0 0 0 0 0 0 c 0 0 0 0 1926.0 120.0 2192.0 39.0 33.0 2342.0 2328.0 74.0 230.0 0 0 0 0 0 0 g 0 0 0 0 188.0 262.0 84.0 101.0 31.0 15.0 25.0 1977.0 2030.0 0 0 0 0 0 0 t 0 0 0 0 153.0 78.0 106.0 2176.0 2293.0 9.0 27.0 319.0 91.0 0 0 0 0 0 0

MA2332.1_rc_shift5 (ZNF175_rc)
; positions_6nt_m2 versus MA2332.1_rc (ZNF175_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.42643; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 0 c 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 0 g 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 0 t 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0 0

MA0136.4_rc_shift5 (Elf5_rc)
; positions_6nt_m2 versus MA0136.4_rc (Elf5_rc); m=21/24; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.423603; -----ACTTCCTT------ ; cor=; Ncor= a 0 0 0 0 0 28663.0 500.0 724.0 280.0 423.0 427.0 341.0 1450.0 0 0 0 0 0 0 c 0 0 0 0 0 4948.0 37803.0 481.0 390.0 40626.0 41025.0 2049.0 5204.0 0 0 0 0 0 0 g 0 0 0 0 0 3355.0 1234.0 389.0 580.0 510.0 182.0 978.0 6065.0 0 0 0 0 0 0 t 0 0 0 0 0 5180.0 2609.0 40552.0 40896.0 587.0 512.0 38778.0 29427.0 0 0 0 0 0 0

MA0750.3_rc_shift4 (ZBTB7A_rc)
; positions_6nt_m2 versus MA0750.3_rc (ZBTB7A_rc); m=22/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.421047; ----caCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 1270.0 8444.0 189.0 318.0 178.0 125.0 128.0 234.0 199.0 0 0 0 0 0 0 c 0 0 0 0 9142.0 1623.0 13112.0 261.0 335.0 14239.0 14130.0 624.0 1496.0 0 0 0 0 0 0 g 0 0 0 0 2485.0 3433.0 711.0 343.0 274.0 163.0 210.0 11293.0 12469.0 0 0 0 0 0 0 t 0 0 0 0 1744.0 1141.0 629.0 13719.0 13854.0 114.0 173.0 2490.0 477.0 0 0 0 0 0 0

MA0761.3_rc_shift5 (ETV1_rc)
; positions_6nt_m2 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.417772; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 0 c 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 0 g 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 0 t 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0 0

MA0076.3_shift4 (ELK4)
; positions_6nt_m2 versus MA0076.3 (ELK4); m=24/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.410498; ----crCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 391.0 2034.0 0.0 8.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0 0 1905.0 145.0 2688.0 0.0 0.0 3427.0 3427.0 0.0 501.0 0 0 0 0 0 0 g 0 0 0 0 570.0 1038.0 16.0 0.0 0.0 0.0 0.0 2915.0 2843.0 0 0 0 0 0 0 t 0 0 0 0 561.0 210.0 723.0 3419.0 3427.0 0.0 0.0 512.0 83.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --yycACTTCCytcttyyy ; Alignment reference a 0 0 441 415 262 1733 33 62 36 57 37 227 286 287 271 282 294 418 419 c 0 0 544 588 1274 105 1809 80 62 1843 1830 1108 473 945 372 435 748 582 566 g 0 0 401 408 219 84 74 92 70 32 29 144 236 291 244 305 406 420 478 t 0 0 610 585 241 74 80 1762 1828 64 100 517 1001 473 1109 974 548 576 533
MA0081.3_shift3 (SPIB)				; positions_6nt_m2 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.670555; ---tCACTTCCTCttt--- ; cor=; Ncor= a 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 0 c 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 0 g 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 0 t 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0 0
MA0080.7_rc_shift3 (Spi1_rc)				; positions_6nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=1; strand=R; shift=3; score=0.63891; ---cCACTTCCTCTTt--- ; cor=; Ncor= a 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 0 c 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 0 g 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 0 t 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0 0
MA0687.2_rc_shift4 (SPIC_rc)				; positions_6nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=2; strand=R; shift=4; score=0.58868; ----tACTTCCksWTTt-- ; cor=; Ncor= a 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 0 c 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 0 g 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 0 t 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0 0
MA0641.1_rc_shift4 (ELF4_rc)				; positions_6nt_m2 versus MA0641.1_rc (ELF4_rc); m=4/24; ncol2=12; w=0; offset=2; strand=R; shift=4; score=0.531505; ----yACTTCCGGGTt--- ; cor=; Ncor= a 0 0 0 0 113.0 979.0 6.0 4.0 2.0 2.0 0.0 0.0 1.0 106.0 149.0 192.0 0 0 0 c 0 0 0 0 463.0 28.0 1207.0 2.0 2.0 1226.0 1226.0 6.0 105.0 75.0 15.0 160.0 0 0 0 g 0 0 0 0 83.0 56.0 18.0 5.0 0.0 0.0 0.0 997.0 990.0 930.0 73.0 109.0 0 0 0 t 0 0 0 0 403.0 4.0 43.0 737.0 739.0 0.0 1.0 54.0 17.0 198.0 705.0 598.0 0 0 0
MA1952.2_rc_shift5 (FOXJ2::ELF1_rc)				; positions_6nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/24; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.488953; -----wCTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 0 c 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 0 g 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 0 t 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0 0
MA0062.4_shift4 (GABPA)				; positions_6nt_m2 versus MA0062.4 (GABPA); m=6/24; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.481264; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 0 c 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 0 g 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 0 t 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0 0
MA0474.4_rc_shift4 (Erg_rc)				; positions_6nt_m2 versus MA0474.4_rc (Erg_rc); m=7/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.469729; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 0 c 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 0 g 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 0 t 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0 0
MA0598.4_shift4 (EHF)				; positions_6nt_m2 versus MA0598.4 (EHF); m=8/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.468711; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 0 c 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 0 g 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 0 t 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0 0
MA1708.2_rc_shift4 (ETV7_rc)				; positions_6nt_m2 versus MA1708.2_rc (ETV7_rc); m=9/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.463677; ----yAYTTCCgs------ ; cor=; Ncor= a 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 0 c 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 0 g 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 0 t 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0 0
MA0640.3_shift4 (ELF3)				; positions_6nt_m2 versus MA0640.3 (ELF3); m=10/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.462155; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 0 c 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 0 g 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 0 t 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0 0
MA0645.2_rc_shift4 (ETV6_rc)				; positions_6nt_m2 versus MA0645.2_rc (ETV6_rc); m=11/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.455512; ----yACTTCCGs------ ; cor=; Ncor= a 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 0 c 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 0 g 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 0 t 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0 0
MA1957.1_rc_shift0 (HOXB2::ELK1_rc)				; positions_6nt_m2 versus MA1957.1_rc (HOXB2::ELK1_rc); m=12/24; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.450743; TAAykACTTCCGgy----- ; cor=; Ncor= a 218.0 1338.0 1338.0 80.0 163.0 1338.0 3.0 88.0 4.0 7.0 6.0 19.0 45.0 130.0 0 0 0 0 0 c 161.0 47.0 38.0 524.0 195.0 22.0 1338.0 18.0 0.0 1338.0 1338.0 6.0 319.0 602.0 0 0 0 0 0 g 64.0 352.0 48.0 43.0 799.0 159.0 24.0 0.0 0.0 0.0 0.0 1338.0 1019.0 94.0 0 0 0 0 0 t 1338.0 88.0 38.0 814.0 539.0 11.0 48.0 1338.0 1338.0 0.0 8.0 54.0 117.0 737.0 0 0 0 0 0
MA1652.2_rc_shift2 (ZKSCAN5_rc)				; positions_6nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=13/24; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.450648; --cTCACyTCC-------- ; cor=; Ncor= a 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 0 c 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 0 g 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 0 t 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0 0
MA0473.4_rc_shift4 (ELF1_rc)				; positions_6nt_m2 versus MA0473.4_rc (ELF1_rc); m=14/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.448943; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 0 c 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 0 g 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 0 t 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0 0
MA1483.3_rc_shift5 (ELF2_rc)				; positions_6nt_m2 versus MA1483.3_rc (ELF2_rc); m=15/24; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.44864; -----ACTTCCGGkw---- ; cor=; Ncor= a 0 0 0 0 0 84429.0 382.0 1811.0 159.0 20.0 18.0 12.0 228.0 13118.0 39326.0 0 0 0 0 c 0 0 0 0 0 4604.0 84429.0 41.0 10.0 84429.0 84429.0 231.0 14852.0 6180.0 10017.0 0 0 0 0 g 0 0 0 0 0 12976.0 5077.0 58.0 51.0 16.0 22.0 84429.0 84429.0 54007.0 12629.0 0 0 0 0 t 0 0 0 0 0 6161.0 28882.0 84429.0 84429.0 21.0 15.0 13644.0 7116.0 30422.0 84429.0 0 0 0 0
MA1992.2_rc_shift4 (Ikzf3_rc)				; positions_6nt_m2 versus MA1992.2_rc (Ikzf3_rc); m=16/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.436606; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 0 c 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 0 g 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 0 t 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0 0
MA2340.1_rc_shift4 (Zbtb2_rc)				; positions_6nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=17/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.435503; ----CaCTTCCGGT----- ; cor=; Ncor= a 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 0 0 c 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 0 0 g 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 0 0 t 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0 0 0
MA1935.2_rc_shift6 (ERF::FOXI1_rc)				; positions_6nt_m2 versus MA1935.2_rc (ERF::FOXI1_rc); m=18/24; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.435493; ------yTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 0 c 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 0 g 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 0 t 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0 0
MA2329.1_shift4 (ZBTB11)				; positions_6nt_m2 versus MA2329.1 (ZBTB11); m=19/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.430684; ----CACTTCCGG------ ; cor=; Ncor= a 0 0 0 0 128.0 1935.0 13.0 79.0 38.0 29.0 15.0 25.0 44.0 0 0 0 0 0 0 c 0 0 0 0 1926.0 120.0 2192.0 39.0 33.0 2342.0 2328.0 74.0 230.0 0 0 0 0 0 0 g 0 0 0 0 188.0 262.0 84.0 101.0 31.0 15.0 25.0 1977.0 2030.0 0 0 0 0 0 0 t 0 0 0 0 153.0 78.0 106.0 2176.0 2293.0 9.0 27.0 319.0 91.0 0 0 0 0 0 0
MA2332.1_rc_shift5 (ZNF175_rc)				; positions_6nt_m2 versus MA2332.1_rc (ZNF175_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.42643; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 0 c 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 0 g 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 0 t 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0 0
MA0136.4_rc_shift5 (Elf5_rc)				; positions_6nt_m2 versus MA0136.4_rc (Elf5_rc); m=21/24; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.423603; -----ACTTCCTT------ ; cor=; Ncor= a 0 0 0 0 0 28663.0 500.0 724.0 280.0 423.0 427.0 341.0 1450.0 0 0 0 0 0 0 c 0 0 0 0 0 4948.0 37803.0 481.0 390.0 40626.0 41025.0 2049.0 5204.0 0 0 0 0 0 0 g 0 0 0 0 0 3355.0 1234.0 389.0 580.0 510.0 182.0 978.0 6065.0 0 0 0 0 0 0 t 0 0 0 0 0 5180.0 2609.0 40552.0 40896.0 587.0 512.0 38778.0 29427.0 0 0 0 0 0 0
MA0750.3_rc_shift4 (ZBTB7A_rc)				; positions_6nt_m2 versus MA0750.3_rc (ZBTB7A_rc); m=22/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.421047; ----caCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 1270.0 8444.0 189.0 318.0 178.0 125.0 128.0 234.0 199.0 0 0 0 0 0 0 c 0 0 0 0 9142.0 1623.0 13112.0 261.0 335.0 14239.0 14130.0 624.0 1496.0 0 0 0 0 0 0 g 0 0 0 0 2485.0 3433.0 711.0 343.0 274.0 163.0 210.0 11293.0 12469.0 0 0 0 0 0 0 t 0 0 0 0 1744.0 1141.0 629.0 13719.0 13854.0 114.0 173.0 2490.0 477.0 0 0 0 0 0 0
MA0761.3_rc_shift5 (ETV1_rc)				; positions_6nt_m2 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.417772; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 0 c 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 0 g 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 0 t 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0 0
MA0076.3_shift4 (ELK4)				; positions_6nt_m2 versus MA0076.3 (ELK4); m=24/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.410498; ----crCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 391.0 2034.0 0.0 8.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0 0 1905.0 145.0 2688.0 0.0 0.0 3427.0 3427.0 0.0 501.0 0 0 0 0 0 0 g 0 0 0 0 570.0 1038.0 16.0 0.0 0.0 0.0 0.0 2915.0 2843.0 0 0 0 0 0 0 t 0 0 0 0 561.0 210.0 723.0 3419.0 3427.0 0.0 0.0 512.0 83.0 0 0 0 0 0 0