One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift3 ; 16 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)    
; positions_7nt_m2; m=0 (reference); ncol1=18; shift=3; ncol=21; ---wcttTCACTTCCCcttyy
; Alignment reference
a	0	0	0	271	222	149	116	70	59	765	22	33	26	34	35	61	105	122	124	181	176
c	0	0	0	236	327	215	201	135	820	93	851	34	35	864	863	729	671	151	167	323	349
g	0	0	0	207	205	121	106	90	41	41	55	26	23	30	22	24	46	85	125	168	169
t	0	0	0	281	241	510	572	700	75	96	67	902	911	67	75	181	173	637	579	323	301
MA0081.3_shift7 (SPIB)
; positions_7nt_m2 versus MA0081.3 (SPIB); m=1/15; ncol2=13; w=0; offset=4; strand=D; shift=7; score=0.668293; -------tCACTTCCTCttt-
; cor=; Ncor=
a	0	0	0	0	0	0	0	2179.0	379.0	24319.0	239.0	450.0	190.0	206.0	275.0	865.0	1020.0	4963.0	2838.0	4159.0	0
c	0	0	0	0	0	0	0	6429.0	23971.0	619.0	22730.0	236.0	200.0	26145.0	25492.0	4517.0	20113.0	3922.0	5425.0	6029.0	0
g	0	0	0	0	0	0	0	3193.0	1721.0	669.0	2516.0	157.0	243.0	153.0	129.0	1829.0	2316.0	781.0	2087.0	2409.0	0
t	0	0	0	0	0	0	0	15129.0	859.0	1323.0	1445.0	26087.0	26297.0	426.0	1034.0	19719.0	3481.0	17264.0	16580.0	14333.0	0
MA0080.7_rc_shift7 (Spi1_rc)
; positions_7nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/15; ncol2=13; w=0; offset=4; strand=R; shift=7; score=0.620013; -------cCACTTCCTCTTt-
; cor=; Ncor=
a	0	0	0	0	0	0	0	12758.0	5766.0	79357.0	1375.0	2889.0	1028.0	956.0	1211.0	3016.0	4375.0	11187.0	6546.0	8997.0	0
c	0	0	0	0	0	0	0	57669.0	83385.0	5128.0	89140.0	1822.0	1063.0	101383.0	99360.0	9636.0	79986.0	10220.0	10614.0	22807.0	0
g	0	0	0	0	0	0	0	11577.0	6075.0	3716.0	7067.0	958.0	1095.0	831.0	550.0	2594.0	12201.0	2330.0	5758.0	6863.0	0
t	0	0	0	0	0	0	0	23194.0	9972.0	16997.0	7616.0	99529.0	102012.0	2028.0	4077.0	89952.0	8636.0	81461.0	82280.0	66531.0	0
MA0687.2_rc_shift8 (SPIC_rc)
; positions_7nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/15; ncol2=13; w=0; offset=5; strand=R; shift=8; score=0.564582; --------tACTTCCksWTTt
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	19.0	194.0	0.0	8.0	16.0	26.0	3.0	0.0	13.0	75.0	4.0	18.0	40.0
c	0	0	0	0	0	0	0	0	9.0	17.0	231.0	13.0	0.0	232.0	217.0	48.0	181.0	0.0	0.0	13.0	70.0
g	0	0	0	0	0	0	0	0	36.0	24.0	0.0	31.0	7.0	0.0	8.0	59.0	75.0	0.0	9.0	25.0	31.0
t	0	0	0	0	0	0	0	0	115.0	45.0	13.0	192.0	204.0	13.0	0.0	88.0	30.0	171.0	194.0	186.0	162.0
MA0517.2_shift3 (STAT1::STAT2)
; positions_7nt_m2 versus MA0517.2 (STAT1::STAT2); m=4/15; ncol2=13; w=0; offset=0; strand=D; shift=3; score=0.513646; ---AGTTTCrkTTYCy-----
; cor=; Ncor=
a	0	0	0	430.0	3.0	0.0	3.0	3.0	0.0	255.0	107.0	4.0	10.0	4.0	15.0	28.0	0	0	0	0	0
c	0	0	0	7.0	148.0	2.0	2.0	13.0	581.0	75.0	111.0	13.0	2.0	170.0	489.0	365.0	0	0	0	0	0
g	0	0	0	151.0	467.0	0.0	0.0	4.0	0.0	191.0	161.0	10.0	0.0	4.0	9.0	36.0	0	0	0	0	0
t	0	0	0	32.0	2.0	618.0	615.0	600.0	39.0	99.0	241.0	593.0	608.0	442.0	107.0	191.0	0	0	0	0	0
MA1952.2_rc_shift9 (FOXJ2::ELF1_rc)
; positions_7nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/15; ncol2=11; w=0; offset=6; strand=R; shift=9; score=0.451026; ---------wCTTCCkGTtt-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	884.0	47.0	86.0	9.0	0.0	22.0	35.0	156.0	33.0	366.0	288.0	0
c	0	0	0	0	0	0	0	0	0	17.0	1514.0	0.0	4.0	1514.0	1514.0	48.0	84.0	157.0	116.0	100.0	0
g	0	0	0	0	0	0	0	0	0	223.0	124.0	0.0	0.0	0.0	119.0	1028.0	1514.0	197.0	327.0	406.0	0
t	0	0	0	0	0	0	0	0	0	390.0	516.0	1514.0	1514.0	23.0	217.0	1514.0	95.0	1514.0	1514.0	1514.0	0
MA0051.2_rc_shift0 (IRF2_rc)
; positions_7nt_m2 versus MA0051.2_rc (IRF2_rc); m=6/15; ncol2=16; w=-3; offset=-3; strand=R; shift=0; score=0.44982; wwyrsTTTCrCTTTCs-----
; cor=; Ncor=
a	4.0	4.0	2.0	3.0	0.0	0.0	0.0	0.0	0.0	6.0	0.0	0.0	1.0	0.0	0.0	1.0	0	0	0	0	0
c	1.0	2.0	3.0	2.0	6.0	0.0	0.0	0.0	12.0	0.0	10.0	0.0	0.0	0.0	10.0	7.0	0	0	0	0	0
g	1.0	0.0	2.0	7.0	6.0	0.0	0.0	0.0	0.0	6.0	0.0	0.0	0.0	0.0	0.0	4.0	0	0	0	0	0
t	6.0	6.0	5.0	0.0	0.0	12.0	12.0	12.0	0.0	0.0	2.0	12.0	11.0	12.0	2.0	0.0	0	0	0	0	0
MA1954.2_rc_shift9 (FOXO1::ELK1_rc)
; positions_7nt_m2 versus MA1954.2_rc (FOXO1::ELK1_rc); m=7/15; ncol2=13; w=0; offset=6; strand=R; shift=9; score=0.445273; ---------aCTTCCTGTTkw
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	980.0	19.0	188.0	7.0	13.0	6.0	5.0	55.0	16.0	53.0	263.0	791.0
c	0	0	0	0	0	0	0	0	0	234.0	1357.0	22.0	16.0	1357.0	1357.0	15.0	23.0	64.0	57.0	31.0	292.0
g	0	0	0	0	0	0	0	0	0	377.0	103.0	35.0	33.0	7.0	4.0	228.0	1357.0	21.0	36.0	1094.0	82.0
t	0	0	0	0	0	0	0	0	0	195.0	248.0	1357.0	1357.0	9.0	2.0	1357.0	18.0	1357.0	1357.0	1010.0	566.0
MA1652.2_rc_shift6 (ZKSCAN5_rc)
; positions_7nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=8/15; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.444139; ------cTCACyTCC------
; cor=; Ncor=
a	0	0	0	0	0	0	548.0	25.0	9.0	3092.0	49.0	27.0	19.0	26.0	50.0	0	0	0	0	0	0
c	0	0	0	0	0	0	2034.0	62.0	3251.0	76.0	3149.0	1827.0	47.0	3236.0	3111.0	0	0	0	0	0	0
g	0	0	0	0	0	0	370.0	41.0	24.0	86.0	37.0	27.0	62.0	27.0	30.0	0	0	0	0	0	0
t	0	0	0	0	0	0	375.0	3199.0	43.0	73.0	92.0	1446.0	3199.0	38.0	136.0	0	0	0	0	0	0
MA0062.4_shift8 (GABPA)
; positions_7nt_m2 versus MA0062.4 (GABPA); m=9/15; ncol2=10; w=0; offset=5; strand=D; shift=8; score=0.433321; --------cACTTCCTGt---
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	7639.0	52260.0	929.0	3885.0	862.0	1398.0	993.0	1722.0	2219.0	5344.0	0	0	0
c	0	0	0	0	0	0	0	0	41398.0	3988.0	55664.0	1443.0	1230.0	61373.0	63107.0	1542.0	6328.0	12006.0	0	0	0
g	0	0	0	0	0	0	0	0	6989.0	4873.0	2169.0	965.0	1633.0	1150.0	520.0	4561.0	51920.0	7720.0	0	0	0
t	0	0	0	0	0	0	0	0	9453.0	4358.0	6717.0	59186.0	61754.0	1558.0	859.0	57654.0	5012.0	40409.0	0	0	0
MA1708.2_rc_shift8 (ETV7_rc)
; positions_7nt_m2 versus MA1708.2_rc (ETV7_rc); m=10/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.427293; --------yAYTTCCgs----
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1162.0	6836.0	0.0	118.0	35.0	20.0	0.0	923.0	800.0	0	0	0	0
c	0	0	0	0	0	0	0	0	6836.0	962.0	6836.0	3.0	0.0	6836.0	6836.0	919.0	6836.0	0	0	0	0
g	0	0	0	0	0	0	0	0	721.0	665.0	89.0	58.0	0.0	4.0	4.0	6836.0	4187.0	0	0	0	0
t	0	0	0	0	0	0	0	0	3564.0	390.0	3070.0	6836.0	6836.0	2.0	0.0	1878.0	2249.0	0	0	0	0
MA0474.4_rc_shift8 (Erg_rc)
; positions_7nt_m2 versus MA0474.4_rc (Erg_rc); m=11/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.426021; --------cACTTCCTGt---
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	3259.0	21563.0	394.0	1533.0	184.0	278.0	196.0	266.0	733.0	2695.0	0	0	0
c	0	0	0	0	0	0	0	0	18018.0	2870.0	23600.0	277.0	274.0	29221.0	29562.0	463.0	2732.0	4936.0	0	0	0
g	0	0	0	0	0	0	0	0	3938.0	3310.0	1173.0	370.0	355.0	265.0	133.0	2559.0	24759.0	2742.0	0	0	0
t	0	0	0	0	0	0	0	0	4846.0	2318.0	4894.0	27881.0	29248.0	297.0	170.0	26773.0	1837.0	19688.0	0	0	0
MA0645.2_rc_shift8 (ETV6_rc)
; positions_7nt_m2 versus MA0645.2_rc (ETV6_rc); m=12/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.421976; --------yACTTCCGs----
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1091.0	6687.0	0.0	41.0	0.0	22.0	13.0	308.0	441.0	0	0	0	0
c	0	0	0	0	0	0	0	0	3205.0	233.0	6687.0	32.0	7.0	6687.0	6687.0	397.0	4292.0	0	0	0	0
g	0	0	0	0	0	0	0	0	342.0	834.0	52.0	13.0	0.0	0.0	0.0	6379.0	2394.0	0	0	0	0
t	0	0	0	0	0	0	0	0	2049.0	184.0	768.0	6687.0	6687.0	21.0	7.0	1476.0	342.0	0	0	0	0
MA2340.1_rc_shift8 (Zbtb2_rc)
; positions_7nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=13/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.412053; --------CaCTTCCGGT---
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	81.0	692.0	32.0	40.0	13.0	19.0	23.0	26.0	28.0	45.0	0	0	0
c	0	0	0	0	0	0	0	0	697.0	105.0	828.0	94.0	73.0	963.0	940.0	58.0	110.0	108.0	0	0	0
g	0	0	0	0	0	0	0	0	139.0	159.0	96.0	62.0	43.0	22.0	35.0	876.0	842.0	90.0	0	0	0
t	0	0	0	0	0	0	0	0	102.0	63.0	63.0	823.0	890.0	15.0	21.0	59.0	39.0	776.0	0	0	0
MA0598.4_shift8 (EHF)
; positions_7nt_m2 versus MA0598.4 (EHF); m=14/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.408261; --------cACTTCCTg----
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2114.0	13414.0	169.0	427.0	140.0	195.0	158.0	428.0	695.0	0	0	0	0
c	0	0	0	0	0	0	0	0	8887.0	456.0	13116.0	167.0	164.0	14833.0	14997.0	608.0	2983.0	0	0	0	0
g	0	0	0	0	0	0	0	0	1540.0	775.0	377.0	152.0	199.0	139.0	101.0	1538.0	9061.0	0	0	0	0
t	0	0	0	0	0	0	0	0	2827.0	723.0	1706.0	14622.0	14865.0	201.0	112.0	12794.0	2629.0	0	0	0	0
MA0640.3_shift8 (ELF3)
; positions_7nt_m2 versus MA0640.3 (ELF3); m=15/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.401853; --------cACTTCCTg----
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	6456.0	40643.0	554.0	1171.0	432.0	662.0	447.0	776.0	2377.0	0	0	0	0
c	0	0	0	0	0	0	0	0	27973.0	2040.0	41950.0	1368.0	943.0	46481.0	47107.0	1315.0	9278.0	0	0	0	0
g	0	0	0	0	0	0	0	0	4122.0	2615.0	1365.0	768.0	954.0	566.0	473.0	1989.0	28319.0	0	0	0	0
t	0	0	0	0	0	0	0	0	9951.0	3204.0	4633.0	45195.0	46173.0	793.0	475.0	44422.0	8528.0	0	0	0	0