/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m3/peak-motifs_positions_7nt_m3.tf
		file1	1	16	2332
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m3 MA0080.7 positions_7nt_m3 Spi1 0.909 0.738 16 13 13 16 0.8125 0.8125 1.0000 D 2
positions_7nt_m3 MA0081.3 positions_7nt_m3 SPIB 0.870 0.707 16 13 13 16 0.8125 0.8125 1.0000 R 2
positions_7nt_m3 MA0687.2 positions_7nt_m3 SPIC 0.856 0.695 16 13 13 16 0.8125 0.8125 1.0000 D 1
positions_7nt_m3 MA1954.2 positions_7nt_m3 FOXO1::ELK1 0.783 0.636 16 13 13 16 0.8125 0.8125 1.0000 D 0
positions_7nt_m3 MA1953.2 positions_7nt_m3 FOXO1::ELF1 0.766 0.622 16 13 13 16 0.8125 0.8125 1.0000 D 0
positions_7nt_m3 MA1955.2 positions_7nt_m3 FOXO1::ELK3 0.752 0.611 16 13 13 16 0.8125 0.8125 1.0000 D 0
positions_7nt_m3 MA1956.2 positions_7nt_m3 FOXO1::FLI1 0.744 0.604 16 13 13 16 0.8125 0.8125 1.0000 D 0
positions_7nt_m3 MA1936.2 positions_7nt_m3 ERF::FOXO1 0.738 0.554 16 12 12 16 0.7500 0.7500 1.0000 D 0
positions_7nt_m3 MA1946.2 positions_7nt_m3 ETV5::FOXI1 0.734 0.550 16 12 12 16 0.7500 0.7500 1.0000 D 0
positions_7nt_m3 MA1942.2 positions_7nt_m3 ETV2::FOXI1 0.786 0.541 16 11 11 16 0.6875 0.6875 1.0000 D 2
positions_7nt_m3 MA1952.2 positions_7nt_m3 FOXJ2::ELF1 0.777 0.534 16 11 11 16 0.6875 0.6875 1.0000 D 2
positions_7nt_m3 MA1950.2 positions_7nt_m3 FLI1::FOXI1 0.749 0.515 16 11 11 16 0.6875 0.6875 1.0000 D 1
positions_7nt_m3 MA0474.4 positions_7nt_m3 Erg 0.807 0.504 16 10 10 16 0.6250 0.6250 1.0000 D 4
positions_7nt_m3 MA0062.4 positions_7nt_m3 GABPA 0.797 0.498 16 10 10 16 0.6250 0.6250 1.0000 R 4
positions_7nt_m3 MA1935.2 positions_7nt_m3 ERF::FOXI1 0.786 0.491 16 10 10 16 0.6250 0.6250 1.0000 D 2
positions_7nt_m3 MA0640.3 positions_7nt_m3 ELF3 0.833 0.469 16 9 9 16 0.5625 0.5625 1.0000 R 5
positions_7nt_m3 MA2332.1 positions_7nt_m3 ZNF175 0.827 0.465 16 9 9 16 0.5625 0.5625 1.0000 D 4
positions_7nt_m3 MA0598.4 positions_7nt_m3 EHF 0.824 0.463 16 9 9 16 0.5625 0.5625 1.0000 R 5
positions_7nt_m3 MA0761.3 positions_7nt_m3 ETV1 0.810 0.456 16 9 9 16 0.5625 0.5625 1.0000 D 4
positions_7nt_m3 MA1947.2 positions_7nt_m3 ETV5::FOXO1 0.722 0.451 16 10 10 16 0.6250 0.6250 1.0000 D 0
positions_7nt_m3 MA1992.2 positions_7nt_m3 Ikzf3 0.792 0.445 16 9 9 16 0.5625 0.5625 1.0000 D 5
positions_7nt_m3 MA0645.2 positions_7nt_m3 ETV6 0.789 0.444 16 9 9 16 0.5625 0.5625 1.0000 D 5
positions_7nt_m3 MA0473.4 positions_7nt_m3 ELF1 0.779 0.438 16 9 9 16 0.5625 0.5625 1.0000 D 5
positions_7nt_m3 MA1708.2 positions_7nt_m3 ETV7 0.776 0.437 16 9 9 16 0.5625 0.5625 1.0000 D 5
positions_7nt_m3 MA1508.2 positions_7nt_m3 IKZF1 0.855 0.427 16 8 8 16 0.5000 0.5000 1.0000 D 3
positions_7nt_m3 MA0136.4 positions_7nt_m3 Elf5 0.846 0.423 16 8 8 16 0.5000 0.5000 1.0000 D 5
positions_7nt_m3 MA1944.2 positions_7nt_m3 ETV5::DRGX 0.759 0.422 16 12 10 18 0.5556 0.6250 0.8333 D 6 
 Host name	rsat
 Job started	2026-01-05.075529
 Job done	2026-01-05.075545
 Seconds	2.69
	user	2.7
	system	0.85
	cuser	11.52
;	csystem	1.08