/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf
		file1	1	18	1627
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m5 MA0081.3 positions_7nt_m5 SPIB 0.958 0.692 18 13 13 18 0.7222 0.7222 1.0000 R 1
positions_7nt_m5 MA0080.7 positions_7nt_m5 Spi1 0.928 0.670 18 13 13 18 0.7222 0.7222 1.0000 D 1
positions_7nt_m5 MA0687.2 positions_7nt_m5 SPIC 0.785 0.567 18 13 13 18 0.7222 0.7222 1.0000 D 0
positions_7nt_m5 MA0062.4 positions_7nt_m5 GABPA 0.857 0.476 18 10 10 18 0.5556 0.5556 1.0000 R 3
positions_7nt_m5 MA0474.4 positions_7nt_m5 Erg 0.845 0.469 18 10 10 18 0.5556 0.5556 1.0000 D 3
positions_7nt_m5 MA1954.2 positions_7nt_m5 FOXO1::ELK1 0.735 0.464 18 13 12 19 0.6316 0.6667 0.9231 D -1
positions_7nt_m5 MA1956.2 positions_7nt_m5 FOXO1::FLI1 0.725 0.458 18 13 12 19 0.6316 0.6667 0.9231 D -1
positions_7nt_m5 MA0640.3 positions_7nt_m5 ELF3 0.915 0.457 18 9 9 18 0.5000 0.5000 1.0000 R 4
positions_7nt_m5 MA0598.4 positions_7nt_m5 EHF 0.912 0.456 18 9 9 18 0.5000 0.5000 1.0000 R 4
positions_7nt_m5 MA1953.2 positions_7nt_m5 FOXO1::ELF1 0.720 0.455 18 13 12 19 0.6316 0.6667 0.9231 D -1
positions_7nt_m5 MA1952.2 positions_7nt_m5 FOXJ2::ELF1 0.743 0.454 18 11 11 18 0.6111 0.6111 1.0000 D 1
positions_7nt_m5 MA1955.2 positions_7nt_m5 FOXO1::ELK3 0.713 0.450 18 13 12 19 0.6316 0.6667 0.9231 D -1
positions_7nt_m5 MA1942.2 positions_7nt_m5 ETV2::FOXI1 0.724 0.442 18 11 11 18 0.6111 0.6111 1.0000 D 1
positions_7nt_m5 MA0473.4 positions_7nt_m5 ELF1 0.878 0.439 18 9 9 18 0.5000 0.5000 1.0000 D 4
positions_7nt_m5 MA1652.2 positions_7nt_m5 ZKSCAN5 0.877 0.438 18 9 9 18 0.5000 0.5000 1.0000 D 6
positions_7nt_m5 MA1992.2 positions_7nt_m5 Ikzf3 0.862 0.431 18 9 9 18 0.5000 0.5000 1.0000 D 4
positions_7nt_m5 MA0645.2 positions_7nt_m5 ETV6 0.857 0.429 18 9 9 18 0.5000 0.5000 1.0000 D 4
positions_7nt_m5 MA1708.2 positions_7nt_m5 ETV7 0.854 0.427 18 9 9 18 0.5000 0.5000 1.0000 D 4
positions_7nt_m5 MA2332.1 positions_7nt_m5 ZNF175 0.850 0.425 18 9 9 18 0.5000 0.5000 1.0000 D 3
positions_7nt_m5 MA0761.3 positions_7nt_m5 ETV1 0.832 0.416 18 9 9 18 0.5000 0.5000 1.0000 D 3
positions_7nt_m5 MA1935.2 positions_7nt_m5 ERF::FOXI1 0.738 0.410 18 10 10 18 0.5556 0.5556 1.0000 D 1 
 Host name	rsat
 Job started	2026-01-05.075551
 Job done	2026-01-05.075606
 Seconds	2.62
	user	2.62
	system	0.86
	cuser	10.78
;	csystem	0.83