One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.075027_2026-01-05.075027_raWB4h/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift1 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift1 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -rrAAGAGGAAGwr ; Alignment reference a 0 549 620 1449 1434 90 1528 75 79 1582 1543 114 459 554 c 0 295 280 88 51 75 32 24 29 67 67 102 363 295 g 0 588 565 128 147 1517 110 1583 1582 48 61 1453 423 541 t 0 282 249 49 82 32 44 32 24 17 43 45 469 324

MA0687.2_shift1 (SPIC)
; oligos_7nt_mkv5_m3 versus MA0687.2 (SPIC); m=1/28; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.866283; -aAAWsmGGAAGTa ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0

MA0080.7_shift2 (Spi1)
; oligos_7nt_mkv5_m3 versus MA0080.7 (Spi1); m=2/28; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.796895; --aAAGAGGAAGTG ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0

MA0081.3_rc_shift2 (SPIB_rc)
; oligos_7nt_mkv5_m3 versus MA0081.3_rc (SPIB_rc); m=3/28; ncol2=13; w=0; offset=1; strand=R; shift=2; score=0.755523; --aaaGAGGAAGTG ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0

MA1954.2_shift0 (FOXO1::ELK1)
; oligos_7nt_mkv5_m3 versus MA1954.2 (FOXO1::ELK1); m=4/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.692015; rwmAACAGGAAGt- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0

MA1953.2_shift0 (FOXO1::ELF1)
; oligos_7nt_mkv5_m3 versus MA1953.2 (FOXO1::ELF1); m=5/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.675677; rtmAACAGGAAgt- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0

MA1956.2_shift0 (FOXO1::FLI1)
; oligos_7nt_mkv5_m3 versus MA1956.2 (FOXO1::FLI1); m=6/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667944; GwmAACAGGAAGT- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0

MA1955.2_shift0 (FOXO1::ELK3)
; oligos_7nt_mkv5_m3 versus MA1955.2 (FOXO1::ELK3); m=7/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667526; rwmAACAGGAAGt- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0

MA1942.2_shift2 (ETV2::FOXI1)
; oligos_7nt_mkv5_m3 versus MA1942.2 (ETV2::FOXI1); m=8/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.666571; --aaACAGGAwRy- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0

MA1952.2_shift2 (FOXJ2::ELF1)
; oligos_7nt_mkv5_m3 versus MA1952.2 (FOXJ2::ELF1); m=9/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.663708; --aaACmGGAAGw- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0

MA1950.2_shift1 (FLI1::FOXI1)
; oligos_7nt_mkv5_m3 versus MA1950.2 (FLI1::FOXI1); m=10/28; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.644442; -taAACAGGAwr-- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0

MA0474.4_shift4 (Erg)
; oligos_7nt_mkv5_m3 versus MA0474.4 (Erg); m=11/28; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.62764; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0

MA0062.4_rc_shift4 (GABPA_rc)
; oligos_7nt_mkv5_m3 versus MA0062.4_rc (GABPA_rc); m=12/28; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.620258; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0

MA1935.2_shift2 (ERF::FOXI1)
; oligos_7nt_mkv5_m3 versus MA1935.2 (ERF::FOXI1); m=13/28; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.607185; --aaACmGGAAr-- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0

MA1946.2_shift0 (ETV5::FOXI1)
; oligos_7nt_mkv5_m3 versus MA1946.2 (ETV5::FOXI1); m=14/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.604622; GtMAACMGGAwG-- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0

MA1936.2_shift0 (ERF::FOXO1)
; oligos_7nt_mkv5_m3 versus MA1936.2 (ERF::FOXO1); m=15/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.598069; rwmAACAGGAAr-- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0

MA0640.3_rc_shift5 (ELF3_rc)
; oligos_7nt_mkv5_m3 versus MA0640.3_rc (ELF3_rc); m=16/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.585588; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0

MA0598.4_rc_shift5 (EHF_rc)
; oligos_7nt_mkv5_m3 versus MA0598.4_rc (EHF_rc); m=17/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.579413; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0

MA2332.1_shift4 (ZNF175)
; oligos_7nt_mkv5_m3 versus MA2332.1 (ZNF175); m=18/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.573613; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0

MA0761.3_shift4 (ETV1)
; oligos_7nt_mkv5_m3 versus MA0761.3 (ETV1); m=19/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.561644; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0

MA1992.2_shift5 (Ikzf3)
; oligos_7nt_mkv5_m3 versus MA1992.2 (Ikzf3); m=20/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.555769; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0

MA0645.2_shift5 (ETV6)
; oligos_7nt_mkv5_m3 versus MA0645.2 (ETV6); m=21/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.553056; -----sCGGAAGTr ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0

MA0473.4_shift5 (ELF1)
; oligos_7nt_mkv5_m3 versus MA0473.4 (ELF1); m=22/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.549522; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0

MA1708.2_shift5 (ETV7)
; oligos_7nt_mkv5_m3 versus MA1708.2 (ETV7); m=23/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.54768; -----scGGAARTr ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0

MA1508.2_shift3 (IKZF1)
; oligos_7nt_mkv5_m3 versus MA1508.2 (IKZF1); m=24/28; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.532871; ---AACAGGAA--- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0

MA0136.4_shift5 (Elf5)
; oligos_7nt_mkv5_m3 versus MA0136.4 (Elf5); m=25/28; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.524553; -----AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0

MA1947.2_shift0 (ETV5::FOXO1)
; oligos_7nt_mkv5_m3 versus MA1947.2 (ETV5::FOXO1); m=26/28; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.482231; rtmAACAGGA---- ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0

MA2326.1_shift6 (IKZF2)
; oligos_7nt_mkv5_m3 versus MA2326.1 (IKZF2); m=27/28; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.460809; ------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0

MA0508.4_rc_shift5 (PRDM1_rc)
; oligos_7nt_mkv5_m3 versus MA0508.4_rc (PRDM1_rc); m=28/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.431081; -----GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift0 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; rrraaGAGGAAGTgrr ; Alignment reference a 511 510 540 950 992 115 1491 58 61 1533 1515 119 156 279 535 527 c 307 325 278 229 123 80 29 23 31 70 57 114 101 211 329 327 g 503 526 580 295 314 1436 110 1557 1555 57 67 1429 122 963 534 479 t 367 327 290 214 259 57 58 50 41 28 49 26 1309 235 290 355

MA0081.3_rc_shift2 (SPIB_rc)
; positions_6nt_m1 versus MA0081.3_rc (SPIB_rc); m=1/33; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.785042; --aaaGAGGAAGTGa- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0

MA0080.7_shift2 (Spi1)
; positions_6nt_m1 versus MA0080.7 (Spi1); m=2/33; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.784896; --aAAGAGGAAGTGg- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0

MA0687.2_shift1 (SPIC)
; positions_6nt_m1 versus MA0687.2 (SPIC); m=3/33; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.676988; -aAAWsmGGAAGTa-- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0

MA1954.2_shift0 (FOXO1::ELK1)
; positions_6nt_m1 versus MA1954.2 (FOXO1::ELK1); m=4/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.634186; rwmAACAGGAAGt--- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0

MA1953.2_shift0 (FOXO1::ELF1)
; positions_6nt_m1 versus MA1953.2 (FOXO1::ELF1); m=5/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.62148; rtmAACAGGAAgt--- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0

MA1956.2_shift0 (FOXO1::FLI1)
; positions_6nt_m1 versus MA1956.2 (FOXO1::FLI1); m=6/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.618765; GwmAACAGGAAGT--- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0

MA1955.2_shift0 (FOXO1::ELK3)
; positions_6nt_m1 versus MA1955.2 (FOXO1::ELK3); m=7/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.615542; rwmAACAGGAAGt--- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0

MA0062.4_rc_shift4 (GABPA_rc)
; positions_6nt_m1 versus MA0062.4_rc (GABPA_rc); m=8/33; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.54699; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0

MA1936.2_shift0 (ERF::FOXO1)
; positions_6nt_m1 versus MA1936.2 (ERF::FOXO1); m=9/33; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.54358; rwmAACAGGAAr---- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0 0

MA0474.4_shift4 (Erg)
; positions_6nt_m1 versus MA0474.4 (Erg); m=10/33; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.542065; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0

MA1952.2_shift2 (FOXJ2::ELF1)
; positions_6nt_m1 versus MA1952.2 (FOXJ2::ELF1); m=11/33; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.538405; --aaACmGGAAGw--- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0

MA1946.2_shift0 (ETV5::FOXI1)
; positions_6nt_m1 versus MA1946.2 (ETV5::FOXI1); m=12/33; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.534083; GtMAACMGGAwG---- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0 0 0

MA1942.2_shift2 (ETV2::FOXI1)
; positions_6nt_m1 versus MA1942.2 (ETV2::FOXI1); m=13/33; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.527706; --aaACAGGAwRy--- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0

MA0640.3_rc_shift5 (ELF3_rc)
; positions_6nt_m1 versus MA0640.3_rc (ELF3_rc); m=14/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.514372; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0

MA0598.4_rc_shift5 (EHF_rc)
; positions_6nt_m1 versus MA0598.4_rc (EHF_rc); m=15/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.512995; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0

MA1950.2_shift1 (FLI1::FOXI1)
; positions_6nt_m1 versus MA1950.2 (FLI1::FOXI1); m=16/33; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.503234; -taAACAGGAwr---- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0 0

MA0473.4_shift5 (ELF1)
; positions_6nt_m1 versus MA0473.4 (ELF1); m=17/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.491834; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0

MA2332.1_shift4 (ZNF175)
; positions_6nt_m1 versus MA2332.1 (ZNF175); m=18/33; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.491785; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0

MA1935.2_shift2 (ERF::FOXI1)
; positions_6nt_m1 versus MA1935.2 (ERF::FOXI1); m=19/33; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.483492; --aaACmGGAAr---- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0

MA1992.2_shift5 (Ikzf3)
; positions_6nt_m1 versus MA1992.2 (Ikzf3); m=20/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.483335; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0

MA0645.2_shift5 (ETV6)
; positions_6nt_m1 versus MA0645.2 (ETV6); m=21/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.482357; -----sCGGAAGTr-- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0

MA0761.3_shift4 (ETV1)
; positions_6nt_m1 versus MA0761.3 (ETV1); m=22/33; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.480225; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0

MA1708.2_shift5 (ETV7)
; positions_6nt_m1 versus MA1708.2 (ETV7); m=23/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.479292; -----scGGAARTr-- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0

MA1652.2_shift7 (ZKSCAN5)
; positions_6nt_m1 versus MA1652.2 (ZKSCAN5); m=24/33; ncol2=9; w=0; offset=7; strand=D; shift=7; score=0.473899; -------GGArGTGAg ; cor=; Ncor= a 0 0 0 0 0 0 0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 c 0 0 0 0 0 0 0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 g 0 0 0 0 0 0 0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 t 0 0 0 0 0 0 0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0

MA0136.4_shift5 (Elf5)
; positions_6nt_m1 versus MA0136.4 (Elf5); m=25/33; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.443879; -----AAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0 0

MA1483.3_shift3 (ELF2)
; positions_6nt_m1 versus MA1483.3 (ELF2); m=26/33; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.44072; ---wmCCGGAAGT--- ; cor=; Ncor= a 0 0 0 84429.0 30422.0 7116.0 13644.0 15.0 21.0 84429.0 84429.0 28882.0 6161.0 0 0 0 c 0 0 0 12629.0 54007.0 84429.0 84429.0 22.0 16.0 51.0 58.0 5077.0 12976.0 0 0 0 g 0 0 0 10017.0 6180.0 14852.0 231.0 84429.0 84429.0 10.0 41.0 84429.0 4604.0 0 0 0 t 0 0 0 39326.0 13118.0 228.0 12.0 18.0 20.0 159.0 1811.0 382.0 84429.0 0 0 0

MA2340.1_shift4 (Zbtb2)
; positions_6nt_m1 versus MA2340.1 (Zbtb2); m=27/33; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.438393; ----ACCGGAAGtG-- ; cor=; Ncor= a 0 0 0 0 776.0 39.0 59.0 21.0 15.0 890.0 823.0 63.0 63.0 102.0 0 0 c 0 0 0 0 90.0 842.0 876.0 35.0 22.0 43.0 62.0 96.0 159.0 139.0 0 0 g 0 0 0 0 108.0 110.0 58.0 940.0 963.0 73.0 94.0 828.0 105.0 697.0 0 0 t 0 0 0 0 45.0 28.0 26.0 23.0 19.0 13.0 40.0 32.0 692.0 81.0 0 0

MA1947.2_shift0 (ETV5::FOXO1)
; positions_6nt_m1 versus MA1947.2 (ETV5::FOXO1); m=28/33; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.438159; rtmAACAGGA------ ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0 0 0

MA1508.2_shift3 (IKZF1)
; positions_6nt_m1 versus MA1508.2 (IKZF1); m=29/33; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.424648; ---AACAGGAA----- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0 0

MA2329.1_rc_shift5 (ZBTB11_rc)
; positions_6nt_m1 versus MA2329.1_rc (ZBTB11_rc); m=30/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.411115; -----CCGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 91.0 319.0 27.0 9.0 2293.0 2176.0 106.0 78.0 153.0 0 0 c 0 0 0 0 0 2030.0 1977.0 25.0 15.0 31.0 101.0 84.0 262.0 188.0 0 0 g 0 0 0 0 0 230.0 74.0 2328.0 2342.0 33.0 39.0 2192.0 120.0 1926.0 0 0 t 0 0 0 0 0 44.0 25.0 15.0 29.0 38.0 79.0 13.0 1935.0 128.0 0 0

MA0750.3_shift5 (ZBTB7A)
; positions_6nt_m1 versus MA0750.3 (ZBTB7A); m=31/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.409521; -----CCGGAAGtg-- ; cor=; Ncor= a 0 0 0 0 0 477.0 2490.0 173.0 114.0 13854.0 13719.0 629.0 1141.0 1744.0 0 0 c 0 0 0 0 0 12469.0 11293.0 210.0 163.0 274.0 343.0 711.0 3433.0 2485.0 0 0 g 0 0 0 0 0 1496.0 624.0 14130.0 14239.0 335.0 261.0 13112.0 1623.0 9142.0 0 0 t 0 0 0 0 0 199.0 234.0 128.0 125.0 178.0 318.0 189.0 8444.0 1270.0 0 0

MA1944.2_shift6 (ETV5::DRGX)
; positions_6nt_m1 versus MA1944.2 (ETV5::DRGX); m=32/33; ncol2=12; w=0; offset=6; strand=D; shift=6; score=0.408894; ------mGGAAGyAAT ; cor=; Ncor= a 0 0 0 0 0 0 157.0 4.0 0.0 440.0 329.0 51.0 31.0 440.0 440.0 16.0 c 0 0 0 0 0 0 283.0 3.0 11.0 10.0 29.0 51.0 178.0 18.0 51.0 13.0 g 0 0 0 0 0 0 12.0 440.0 440.0 0.0 15.0 440.0 35.0 141.0 79.0 29.0 t 0 0 0 0 0 0 16.0 2.0 0.0 1.0 111.0 0.0 262.0 3.0 56.0 440.0

MA0076.3_rc_shift5 (ELK4_rc)
; positions_6nt_m1 versus MA0076.3_rc (ELK4_rc); m=33/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.406048; -----CCGGAAGyg-- ; cor=; Ncor= a 0 0 0 0 0 83.0 512.0 0.0 0.0 3427.0 3419.0 723.0 210.0 561.0 0 0 c 0 0 0 0 0 2843.0 2915.0 0.0 0.0 0.0 0.0 16.0 1038.0 570.0 0 0 g 0 0 0 0 0 501.0 0.0 3427.0 3427.0 0.0 0.0 2688.0 145.0 1905.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 8.0 0.0 2034.0 391.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift3 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift3 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=3; ncol=13; ---wtATTCCAbr ; Alignment reference a 0 0 0 313 265 1062 12 75 96 10 1029 194 302 c 0 0 0 222 245 9 14 15 962 1002 12 277 239 g 0 0 0 254 242 14 13 10 15 50 44 309 282 t 0 0 0 305 342 9 1055 994 21 32 9 314 271

MA0090.4_shift3 (TEAD1)
; oligos_6nt_mkv4_m4 versus MA0090.4 (TEAD1); m=1/19; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.77922; ---ACATTCCAG- ; cor=; Ncor= a 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0

MA0809.3_shift3 (TEAD4)
; oligos_6nt_mkv4_m4 versus MA0809.3 (TEAD4); m=2/19; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.712676; ---ACATTCCA-- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0

MA0808.1_shift3 (TEAD3)
; oligos_6nt_mkv4_m4 versus MA0808.1 (TEAD3); m=3/19; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.68401; ---rCATTCCw-- ; cor=; Ncor= a 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0

MA1525.3_rc_shift3 (NFATC4_rc)
; oligos_6nt_mkv4_m4 versus MA1525.3_rc (NFATC4_rc); m=4/19; ncol2=9; w=0; offset=0; strand=R; shift=3; score=0.641548; ---wkTTTCCrt- ; cor=; Ncor= a 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 1505.0 0 c 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 2590.0 0 g 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 715.0 0 t 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0 7139.0 0

MA0019.2_rc_shift2 (Ddit3::Cebpa_rc)
; oligos_6nt_mkv4_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=5/19; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.61704; --ggkATTGCAy- ; cor=; Ncor= a 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 c 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 g 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 t 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0

MA1121.2_shift3 (TEAD2)
; oligos_6nt_mkv4_m4 versus MA1121.2 (TEAD2); m=6/19; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.612839; ---ACATTCC--- ; cor=; Ncor= a 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0

MA0152.3_rc_shift5 (Nfatc2_rc)
; oligos_6nt_mkv4_m4 versus MA0152.3_rc (Nfatc2_rc); m=7/19; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.576823; -----TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0

MA2333.1_shift4 (ZNF35)
; oligos_6nt_mkv4_m4 versus MA2333.1 (ZNF35); m=8/19; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.49461; ----AATTCTA-- ; cor=; Ncor= a 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0

MA1117.2_shift5 (RELB)
; oligos_6nt_mkv4_m4 versus MA1117.2 (RELB); m=9/19; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.493983; -----ATTCCCC- ; cor=; Ncor= a 0 0 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 c 0 0 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 g 0 0 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 t 0 0 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0

MA1636.2_rc_shift5 (CEBPG_rc)
; oligos_6nt_mkv4_m4 versus MA1636.2_rc (CEBPG_rc); m=10/19; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.471882; -----ATTGCATC ; cor=; Ncor= a 0 0 0 0 0 29183.0 393.0 319.0 3736.0 390.0 31414.0 2379.0 6359.0 c 0 0 0 0 0 2291.0 304.0 129.0 309.0 36189.0 1101.0 2565.0 29947.0 g 0 0 0 0 0 4761.0 191.0 582.0 28897.0 215.0 2719.0 481.0 351.0 t 0 0 0 0 0 1081.0 36428.0 36286.0 4374.0 522.0 2082.0 31891.0 659.0

MA1624.2_shift6 (Stat5a)
; oligos_6nt_mkv4_m4 versus MA1624.2 (Stat5a); m=11/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.471281; ------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0

MA0625.3_rc_shift5 (NFATC3_rc)
; oligos_6nt_mkv4_m4 versus MA0625.3_rc (NFATC3_rc); m=12/19; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.471002; -----tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0

MA0624.3_rc_shift5 (Nfatc1_rc)
; oligos_6nt_mkv4_m4 versus MA0624.3_rc (Nfatc1_rc); m=13/19; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.460235; -----TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0

MA1579.2_shift6 (ZBTB26)
; oligos_6nt_mkv4_m4 versus MA1579.2 (ZBTB26); m=14/19; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.450698; ------cTCCAGA ; cor=; Ncor= a 0 0 0 0 0 0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 c 0 0 0 0 0 0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 g 0 0 0 0 0 0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 t 0 0 0 0 0 0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0

MA0101.1_shift0 (REL)
; oligos_6nt_mkv4_m4 versus MA0101.1 (REL); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.446346; sGGrmwTTCC--- ; cor=; Ncor= a 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 c 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 g 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 t 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0

MA0144.3_rc_shift6 (STAT3_rc)
; oligos_6nt_mkv4_m4 versus MA0144.3_rc (STAT3_rc); m=16/19; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.442758; ------TTCCmrG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 402.0 0.0 6472.0 13000.0 1029.0 c 0 0 0 0 0 0 0.0 0.0 18686.0 20046.0 11456.0 0.0 0.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7780.0 19585.0 t 0 0 0 0 0 0 21620.0 21620.0 2532.0 1574.0 3692.0 840.0 1006.0

MA0520.2_shift6 (Stat6)
; oligos_6nt_mkv4_m4 versus MA0520.2 (Stat6); m=17/19; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.442565; ------TTCywsa ; cor=; Ncor= a 0 0 0 0 0 0 0.0 13.0 122.0 70.0 664.0 328.0 1153.0 c 0 0 0 0 0 0 0.0 0.0 1680.0 1204.0 21.0 534.0 3.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 219.0 898.0 416.0 t 0 0 0 0 0 0 1852.0 1839.0 50.0 578.0 948.0 92.0 280.0

MA0519.2_shift6 (Stat5a::Stat5b)
; oligos_6nt_mkv4_m4 versus MA0519.2 (Stat5a::Stat5b); m=18/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.440111; ------TTCCmRG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 0.0 263.0 7044.0 11543.0 0.0 c 0 0 0 0 0 0 0.0 1600.0 16341.0 12795.0 6137.0 0.0 0.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 4140.0 16507.0 t 0 0 0 0 0 0 16507.0 14907.0 166.0 3449.0 3326.0 824.0 0.0

MA0137.4_shift6 (STAT1)
; oligos_6nt_mkv4_m4 versus MA0137.4 (STAT1); m=19/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.418538; ------TTCyrGG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 361.0 109.0 1739.0 163.0 29.0 c 0 0 0 0 0 0 52.0 6.0 3262.0 2009.0 0.0 0.0 7.0 g 0 0 0 0 0 0 0.0 110.0 6.0 0.0 1637.0 3466.0 3426.0 t 0 0 0 0 0 0 3577.0 3513.0 0.0 1511.0 253.0 0.0 167.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift4 ; 48 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wwATTTTTAww ; Alignment reference a 0 0 0 0 1088 1053 3436 179 249 174 228 276 3363 1244 1388 c 0 0 0 0 547 813 84 142 137 125 192 145 138 638 688 g 0 0 0 0 818 588 170 150 158 93 143 109 179 707 498 t 0 0 0 0 1496 1495 259 3478 3405 3557 3386 3419 269 1360 1375

MA0052.5_rc_shift4 (MEF2A_rc)
; oligos_7nt_mkv5_m1 versus MA0052.5_rc (MEF2A_rc); m=1/47; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.777935; ----CTATTTTTAg- ; cor=; Ncor= a 0 0 0 0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 0 c 0 0 0 0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 0 g 0 0 0 0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 0 t 0 0 0 0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 0

MA2124.1_shift6 (Hmga1)
; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=2/47; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.725441; ------ATTTTTAw- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0

MA0773.1_rc_shift3 (MEF2D_rc)
; oligos_7nt_mkv5_m1 versus MA0773.1_rc (MEF2D_rc); m=3/47; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.697345; ---kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0

MA0497.2_rc_shift3 (MEF2C_rc)
; oligos_7nt_mkv5_m1 versus MA0497.2_rc (MEF2C_rc); m=4/47; ncol2=11; w=-1; offset=-1; strand=R; shift=3; score=0.682031; ---kCTATTTTTrg- ; cor=; Ncor= a 0 0 0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 0 c 0 0 0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 0 g 0 0 0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 0 t 0 0 0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 0

MA0660.1_rc_shift3 (MEF2B_rc)
; oligos_7nt_mkv5_m1 versus MA0660.1_rc (MEF2B_rc); m=5/47; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.67892; ---kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0

MA1125.2_rc_shift4 (ZNF384_rc)
; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=6/47; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.565209; ----ttTTTTTT--- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0

MA0148.5_rc_shift6 (FOXA1_rc)
; oligos_7nt_mkv5_m1 versus MA0148.5_rc (FOXA1_rc); m=7/47; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.539135; ------ATGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 0 c 0 0 0 0 0 0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 0 g 0 0 0 0 0 0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 0 t 0 0 0 0 0 0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 0

MA0108.3_rc_shift8 (TBP_rc)
; oligos_7nt_mkv5_m1 versus MA0108.3_rc (TBP_rc); m=8/47; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.533704; --------wTWTATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 121.0 6.0 121.0 30.0 374.0 35.0 309.0 c 0 0 0 0 0 0 0 0 44.0 20.0 0.0 5.0 2.0 2.0 18.0 g 0 0 0 0 0 0 0 0 2.0 3.0 0.0 0.0 10.0 0.0 46.0 t 0 0 0 0 0 0 0 0 222.0 360.0 268.0 354.0 3.0 352.0 16.0

MA1563.2_rc_shift4 (SOX18_rc)
; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=9/47; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.527148; ----bhATTGTt--- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0

MA0047.4_rc_shift7 (FOXA2_rc)
; oligos_7nt_mkv5_m1 versus MA0047.4_rc (FOXA2_rc); m=10/47; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.526174; -------TGTTTACw ; cor=; Ncor= a 0 0 0 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 c 0 0 0 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 g 0 0 0 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 t 0 0 0 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0

MA2118.1_rc_shift7 (FOXS1_rc)
; oligos_7nt_mkv5_m1 versus MA2118.1_rc (FOXS1_rc); m=11/47; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.519906; -------TGTTTACa ; cor=; Ncor= a 0 0 0 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 c 0 0 0 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 g 0 0 0 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 t 0 0 0 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0

MA0032.2_rc_shift6 (FOXC1_rc)
; oligos_7nt_mkv5_m1 versus MA0032.2_rc (FOXC1_rc); m=12/47; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.514431; ------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0

MA0613.1_rc_shift6 (FOXG1_rc)
; oligos_7nt_mkv5_m1 versus MA0613.1_rc (FOXG1_rc); m=13/47; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.509711; ------wTGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 333.0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 0 c 0 0 0 0 0 0 2.0 1.0 1.0 1.0 1.0 1.0 1.0 623.0 0 g 0 0 0 0 0 0 167.0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 0 0 0 498.0 997.0 1.0 997.0 997.0 997.0 1.0 374.0 0

MA0845.1_rc_shift6 (FOXB1_rc)
; oligos_7nt_mkv5_m1 versus MA0845.1_rc (FOXB1_rc); m=14/47; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.499617; ------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0

MA0033.2_rc_shift7 (FOXL1_rc)
; oligos_7nt_mkv5_m1 versus MA0033.2_rc (FOXL1_rc); m=15/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.489699; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0

MA0901.3_rc_shift8 (HOXB13_rc)
; oligos_7nt_mkv5_m1 versus MA0901.3_rc (HOXB13_rc); m=16/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.487004; --------TTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 0 0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 0 0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 0 0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0

MA1606.2_rc_shift7 (Foxf1_rc)
; oligos_7nt_mkv5_m1 versus MA1606.2_rc (Foxf1_rc); m=17/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.481045; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 c 0 0 0 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 g 0 0 0 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 t 0 0 0 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0

MA0913.3_rc_shift8 (HOXD9_rc)
; oligos_7nt_mkv5_m1 versus MA0913.3_rc (HOXD9_rc); m=18/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score= 0.4726; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0

MA1103.3_rc_shift7 (FOXK2_rc)
; oligos_7nt_mkv5_m1 versus MA1103.3_rc (FOXK2_rc); m=19/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.469006; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 c 0 0 0 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 g 0 0 0 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 t 0 0 0 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0

MA0899.2_rc_shift8 (HOXA10_rc)
; oligos_7nt_mkv5_m1 versus MA0899.2_rc (HOXA10_rc); m=20/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.468645; --------tTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0

MA1473.2_rc_shift8 (CDX4_rc)
; oligos_7nt_mkv5_m1 versus MA1473.2_rc (CDX4_rc); m=21/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.467342; --------tTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0

MA0481.4_rc_shift7 (FOXP1_rc)
; oligos_7nt_mkv5_m1 versus MA0481.4_rc (FOXP1_rc); m=22/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.466247; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 c 0 0 0 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 g 0 0 0 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 t 0 0 0 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0

MA0031.2_rc_shift7 (FOXD1_rc)
; oligos_7nt_mkv5_m1 versus MA0031.2_rc (FOXD1_rc); m=23/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.465565; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0

MA0848.1_rc_shift7 (FOXO4_rc)
; oligos_7nt_mkv5_m1 versus MA0848.1_rc (FOXO4_rc); m=24/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464878; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0

MA0868.3_rc_shift5 (SOX8_rc)
; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=25/47; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.464626; -----yATTGTT--- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0

MA1683.2_rc_shift7 (FOXA3_rc)
; oligos_7nt_mkv5_m1 versus MA1683.2_rc (FOXA3_rc); m=26/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464316; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 c 0 0 0 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 g 0 0 0 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 t 0 0 0 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0

MA0042.2_rc_shift7 (FOXI1_rc)
; oligos_7nt_mkv5_m1 versus MA0042.2_rc (FOXI1_rc); m=27/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464314; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0

MA2117.1_rc_shift7 (FOXP4_rc)
; oligos_7nt_mkv5_m1 versus MA2117.1_rc (FOXP4_rc); m=28/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.460986; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 c 0 0 0 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 g 0 0 0 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 t 0 0 0 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0

MA0850.1_rc_shift7 (FOXP3_rc)
; oligos_7nt_mkv5_m1 versus MA0850.1_rc (FOXP3_rc); m=29/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.459902; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0

MA0852.3_rc_shift7 (FOXK1_rc)
; oligos_7nt_mkv5_m1 versus MA0852.3_rc (FOXK1_rc); m=30/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.458754; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 c 0 0 0 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 g 0 0 0 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 t 0 0 0 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0

MA0157.4_rc_shift7 (Foxo3_rc)
; oligos_7nt_mkv5_m1 versus MA0157.4_rc (Foxo3_rc); m=31/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.45817; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 c 0 0 0 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 g 0 0 0 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 t 0 0 0 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0

MA0849.1_rc_shift7 (FOXO6_rc)
; oligos_7nt_mkv5_m1 versus MA0849.1_rc (FOXO6_rc); m=32/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.455276; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0

MA0601.2_shift8 (Arid3b)
; oligos_7nt_mkv5_m1 versus MA0601.2 (Arid3b); m=33/47; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.44975; --------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0

MA0480.3_rc_shift7 (Foxo1_rc)
; oligos_7nt_mkv5_m1 versus MA0480.3_rc (Foxo1_rc); m=34/47; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.447421; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 354.0 757.0 249.0 220.0 296.0 11591.0 554.0 0 c 0 0 0 0 0 0 0 153.0 356.0 508.0 384.0 478.0 1025.0 11670.0 0 g 0 0 0 0 0 0 0 277.0 12710.0 387.0 849.0 934.0 555.0 481.0 0 t 0 0 0 0 0 0 0 13332.0 293.0 12972.0 12663.0 12408.0 945.0 1411.0 0

MA0878.3_rc_shift8 (CDX1_rc)
; oligos_7nt_mkv5_m1 versus MA0878.3_rc (CDX1_rc); m=35/47; ncol2=10; w=0; offset=4; strand=R; shift=8; score=0.44379; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 854.0 0.0 29.0 230.0 8617.0 0.0 355.0 c 0 0 0 0 0 0 0 0 754.0 0.0 97.0 0.0 0.0 344.0 0.0 g 0 0 0 0 0 0 0 0 1418.0 0.0 72.0 56.0 0.0 0.0 3795.0 t 0 0 0 0 0 0 0 0 7199.0 8617.0 8617.0 8617.0 0.0 8617.0 4822.0

MA1607.2_rc_shift7 (Foxl2_rc)
; oligos_7nt_mkv5_m1 versus MA1607.2_rc (Foxl2_rc); m=36/47; ncol2=10; w=0; offset=3; strand=R; shift=7; score=0.439036; -------TGTTTACA ; cor=; Ncor= a 0 0 0 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 c 0 0 0 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 g 0 0 0 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 t 0 0 0 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0

MA0757.2_rc_shift0 (ONECUT3_rc)
; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=37/47; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.438359; tTATyGATTTTt--- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0

MA0907.2_rc_shift8 (HOXC13_rc)
; oligos_7nt_mkv5_m1 versus MA0907.2_rc (HOXC13_rc); m=38/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.429921; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0

MA0905.2_rc_shift8 (HOXC10_rc)
; oligos_7nt_mkv5_m1 versus MA0905.2_rc (HOXC10_rc); m=39/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.422947; --------tTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0

MA0908.2_rc_shift8 (HOXD11_rc)
; oligos_7nt_mkv5_m1 versus MA0908.2_rc (HOXD11_rc); m=40/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.42209; --------tTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 230.0 230.0 230.0 175.0 8.0 68.0 16.0

MA0151.1_rc_shift9 (Arid3a_rc)
; oligos_7nt_mkv5_m1 versus MA0151.1_rc (Arid3a_rc); m=41/47; ncol2=6; w=0; offset=5; strand=R; shift=9; score=0.418396; ---------TTTrAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0

MA0485.3_rc_shift8 (HOXC9_rc)
; oligos_7nt_mkv5_m1 versus MA0485.3_rc (HOXC9_rc); m=42/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.416629; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0

MA0909.4_rc_shift9 (Hoxd13_rc)
; oligos_7nt_mkv5_m1 versus MA0909.4_rc (Hoxd13_rc); m=43/47; ncol2=7; w=0; offset=5; strand=R; shift=9; score= 0.4165; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 c 0 0 0 0 0 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 g 0 0 0 0 0 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 t 0 0 0 0 0 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0

MA0650.4_rc_shift9 (Hoxa13_rc)
; oligos_7nt_mkv5_m1 versus MA0650.4_rc (Hoxa13_rc); m=44/47; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.413889; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 247.0 212.0 832.0 16662.0 929.0 1439.0 c 0 0 0 0 0 0 0 0 0 145.0 98.0 407.0 232.0 666.0 146.0 g 0 0 0 0 0 0 0 0 0 306.0 125.0 205.0 249.0 243.0 1594.0 t 0 0 0 0 0 0 0 0 0 16550.0 16813.0 15804.0 105.0 15410.0 14069.0

MA1503.2_rc_shift8 (HOXB9_rc)
; oligos_7nt_mkv5_m1 versus MA1503.2_rc (HOXB9_rc); m=45/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.410733; --------tTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0

MA0465.3_rc_shift9 (CDX2_rc)
; oligos_7nt_mkv5_m1 versus MA0465.3_rc (CDX2_rc); m=46/47; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.406639; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 804.0 666.0 1045.0 30975.0 459.0 1810.0 c 0 0 0 0 0 0 0 0 0 502.0 366.0 999.0 386.0 1196.0 184.0 g 0 0 0 0 0 0 0 0 0 595.0 349.0 761.0 391.0 414.0 3312.0 t 0 0 0 0 0 0 0 0 0 30125.0 30645.0 29221.0 274.0 29957.0 26720.0

MA0911.2_rc_shift8 (Hoxa11_rc)
; oligos_7nt_mkv5_m1 versus MA0911.2_rc (Hoxa11_rc); m=47/47; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.404927; --------tTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 0 704.0 704.0 704.0 489.0 14.0 250.0 30.0

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift0 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_6nt_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; rrraaGAGGAAstrr ; Alignment reference a 726 746 769 1364 1524 70 2271 43 70 2311 2268 505 514 681 768 c 444 466 409 353 163 99 35 21 36 35 55 885 404 470 504 g 723 727 828 441 379 2188 73 2296 2266 42 56 816 406 754 705 t 526 480 413 261 353 62 40 59 47 31 40 213 1095 514 442

MA0080.7_shift2 (Spi1)
; positions_6nt_m5 versus MA0080.7 (Spi1); m=1/24; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.775509; --aAAGAGGAAGTGg ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0

MA0081.3_rc_shift2 (SPIB_rc)
; positions_6nt_m5 versus MA0081.3_rc (SPIB_rc); m=2/24; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.755872; --aaaGAGGAAGTGa ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0

MA0687.2_shift1 (SPIC)
; positions_6nt_m5 versus MA0687.2 (SPIC); m=3/24; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.680291; -aAAWsmGGAAGTa- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0

MA1954.2_shift0 (FOXO1::ELK1)
; positions_6nt_m5 versus MA1954.2 (FOXO1::ELK1); m=4/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.647642; rwmAACAGGAAGt-- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0

MA1953.2_shift0 (FOXO1::ELF1)
; positions_6nt_m5 versus MA1953.2 (FOXO1::ELF1); m=5/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.642382; rtmAACAGGAAgt-- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0

MA1956.2_shift0 (FOXO1::FLI1)
; positions_6nt_m5 versus MA1956.2 (FOXO1::FLI1); m=6/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.622036; GwmAACAGGAAGT-- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0

MA1955.2_shift0 (FOXO1::ELK3)
; positions_6nt_m5 versus MA1955.2 (FOXO1::ELK3); m=7/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.621715; rwmAACAGGAAGt-- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0

MA1936.2_shift0 (ERF::FOXO1)
; positions_6nt_m5 versus MA1936.2 (ERF::FOXO1); m=8/24; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.56115; rwmAACAGGAAr--- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0

MA1952.2_shift2 (FOXJ2::ELF1)
; positions_6nt_m5 versus MA1952.2 (FOXJ2::ELF1); m=9/24; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.54805; --aaACmGGAAGw-- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0

MA1942.2_shift2 (ETV2::FOXI1)
; positions_6nt_m5 versus MA1942.2 (ETV2::FOXI1); m=10/24; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.541382; --aaACAGGAwRy-- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0

MA1950.2_shift1 (FLI1::FOXI1)
; positions_6nt_m5 versus MA1950.2 (FLI1::FOXI1); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.53197; -taAACAGGAwr--- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0

MA0474.4_shift4 (Erg)
; positions_6nt_m5 versus MA0474.4 (Erg); m=12/24; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.531848; ----aCAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0

MA0062.4_rc_shift4 (GABPA_rc)
; positions_6nt_m5 versus MA0062.4_rc (GABPA_rc); m=13/24; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.521996; ----aCAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0

MA1935.2_shift2 (ERF::FOXI1)
; positions_6nt_m5 versus MA1935.2 (ERF::FOXI1); m=14/24; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.508664; --aaACmGGAAr--- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0

MA0640.3_rc_shift5 (ELF3_rc)
; positions_6nt_m5 versus MA0640.3_rc (ELF3_rc); m=15/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.491924; -----cAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0

MA0598.4_rc_shift5 (EHF_rc)
; positions_6nt_m5 versus MA0598.4_rc (EHF_rc); m=16/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.488543; -----cAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0

MA2332.1_shift4 (ZNF175)
; positions_6nt_m5 versus MA2332.1 (ZNF175); m=17/24; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.477558; ----aCAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0

MA0761.3_shift4 (ETV1)
; positions_6nt_m5 versus MA0761.3 (ETV1); m=18/24; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.471877; ----aCAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0

MA1708.2_shift5 (ETV7)
; positions_6nt_m5 versus MA1708.2 (ETV7); m=19/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.467797; -----scGGAARTr- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0

MA1992.2_shift5 (Ikzf3)
; positions_6nt_m5 versus MA1992.2 (Ikzf3); m=20/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.462194; -----CAGGAAGTG- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0

MA0473.4_shift5 (ELF1)
; positions_6nt_m5 versus MA0473.4 (ELF1); m=21/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.461356; -----CAGGAAGTG- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0

MA0645.2_shift5 (ETV6)
; positions_6nt_m5 versus MA0645.2 (ETV6); m=22/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.457655; -----sCGGAAGTr- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0

MA1508.2_shift3 (IKZF1)
; positions_6nt_m5 versus MA1508.2 (IKZF1); m=23/24; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.452263; ---AACAGGAA---- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0

MA0136.4_shift5 (Elf5)
; positions_6nt_m5 versus MA0136.4 (Elf5); m=24/24; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.431808; -----AAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift0 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m3_shift0 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; rrraaGAGGAAGcrrr ; Alignment reference a 716 696 1026 1432 1507 123 2106 84 83 2110 2130 125 523 864 745 719 c 470 491 362 277 152 113 52 29 37 110 80 102 854 424 433 502 g 681 715 603 403 384 2041 105 2166 2176 75 81 2057 428 607 767 652 t 465 430 341 220 289 55 69 53 36 37 41 48 527 437 387 459

MA0080.7_shift2 (Spi1)
; positions_7nt_m3 versus MA0080.7 (Spi1); m=1/27; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.738219; --aAAGAGGAAGTGg- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0

MA0081.3_rc_shift2 (SPIB_rc)
; positions_7nt_m3 versus MA0081.3_rc (SPIB_rc); m=2/27; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.706787; --aaaGAGGAAGTGa- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0

MA0687.2_shift1 (SPIC)
; positions_7nt_m3 versus MA0687.2 (SPIC); m=3/27; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.695279; -aAAWsmGGAAGTa-- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0

MA1954.2_shift0 (FOXO1::ELK1)
; positions_7nt_m3 versus MA1954.2 (FOXO1::ELK1); m=4/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.636207; rwmAACAGGAAGt--- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0

MA1953.2_shift0 (FOXO1::ELF1)
; positions_7nt_m3 versus MA1953.2 (FOXO1::ELF1); m=5/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.622124; rtmAACAGGAAgt--- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0

MA1955.2_shift0 (FOXO1::ELK3)
; positions_7nt_m3 versus MA1955.2 (FOXO1::ELK3); m=6/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.611285; rwmAACAGGAAGt--- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0

MA1956.2_shift0 (FOXO1::FLI1)
; positions_7nt_m3 versus MA1956.2 (FOXO1::FLI1); m=7/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.604457; GwmAACAGGAAGT--- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0

MA1936.2_shift0 (ERF::FOXO1)
; positions_7nt_m3 versus MA1936.2 (ERF::FOXO1); m=8/27; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.553818; rwmAACAGGAAr---- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0 0

MA1946.2_shift0 (ETV5::FOXI1)
; positions_7nt_m3 versus MA1946.2 (ETV5::FOXI1); m=9/27; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.550173; GtMAACMGGAwG---- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0 0 0

MA1942.2_shift2 (ETV2::FOXI1)
; positions_7nt_m3 versus MA1942.2 (ETV2::FOXI1); m=10/27; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.540639; --aaACAGGAwRy--- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0

MA1952.2_shift2 (FOXJ2::ELF1)
; positions_7nt_m3 versus MA1952.2 (FOXJ2::ELF1); m=11/27; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.534143; --aaACmGGAAGw--- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0

MA1950.2_shift1 (FLI1::FOXI1)
; positions_7nt_m3 versus MA1950.2 (FLI1::FOXI1); m=12/27; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.514754; -taAACAGGAwr---- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0 0

MA0474.4_shift4 (Erg)
; positions_7nt_m3 versus MA0474.4 (Erg); m=13/27; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.504132; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0

MA0062.4_rc_shift4 (GABPA_rc)
; positions_7nt_m3 versus MA0062.4_rc (GABPA_rc); m=14/27; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.498176; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0

MA1935.2_shift2 (ERF::FOXI1)
; positions_7nt_m3 versus MA1935.2 (ERF::FOXI1); m=15/27; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.490974; --aaACmGGAAr---- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0

MA0640.3_rc_shift5 (ELF3_rc)
; positions_7nt_m3 versus MA0640.3_rc (ELF3_rc); m=16/27; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.468784; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0

MA2332.1_shift4 (ZNF175)
; positions_7nt_m3 versus MA2332.1 (ZNF175); m=17/27; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.464969; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0

MA0598.4_rc_shift5 (EHF_rc)
; positions_7nt_m3 versus MA0598.4_rc (EHF_rc); m=18/27; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.463436; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0

MA0761.3_shift4 (ETV1)
; positions_7nt_m3 versus MA0761.3 (ETV1); m=19/27; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.455656; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0

MA1947.2_shift0 (ETV5::FOXO1)
; positions_7nt_m3 versus MA1947.2 (ETV5::FOXO1); m=20/27; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.451432; rtmAACAGGA------ ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0 0 0

MA1992.2_shift5 (Ikzf3)
; positions_7nt_m3 versus MA1992.2 (Ikzf3); m=21/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.445349; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0

MA0645.2_shift5 (ETV6)
; positions_7nt_m3 versus MA0645.2 (ETV6); m=22/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.444047; -----sCGGAAGTr-- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0

MA0473.4_shift5 (ELF1)
; positions_7nt_m3 versus MA0473.4 (ELF1); m=23/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.43832; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0

MA1708.2_shift5 (ETV7)
; positions_7nt_m3 versus MA1708.2 (ETV7); m=24/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.436695; -----scGGAARTr-- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0

MA1508.2_shift3 (IKZF1)
; positions_7nt_m3 versus MA1508.2 (IKZF1); m=25/27; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.427379; ---AACAGGAA----- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0 0

MA0136.4_shift5 (Elf5)
; positions_7nt_m3 versus MA0136.4 (Elf5); m=26/27; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.423128; -----AAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0 0

MA1944.2_shift6 (ETV5::DRGX)
; positions_7nt_m3 versus MA1944.2 (ETV5::DRGX); m=27/27; ncol2=12; w=0; offset=6; strand=D; shift=6; score=0.421731; ------mGGAAGyAAT ; cor=; Ncor= a 0 0 0 0 0 0 157.0 4.0 0.0 440.0 329.0 51.0 31.0 440.0 440.0 16.0 c 0 0 0 0 0 0 283.0 3.0 11.0 10.0 29.0 51.0 178.0 18.0 51.0 13.0 g 0 0 0 0 0 0 12.0 440.0 440.0 0.0 15.0 440.0 35.0 141.0 79.0 29.0 t 0 0 0 0 0 0 16.0 2.0 0.0 1.0 111.0 0.0 262.0 3.0 56.0 440.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift3 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m2_shift3 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=3; ncol=14; ---ssCGCCCTCss ; Alignment reference a 0 0 0 330 322 34 68 53 60 60 137 36 327 318 c 0 0 0 1052 845 2229 67 1998 2025 2109 280 2083 910 889 g 0 0 0 624 823 64 2165 211 197 81 302 175 663 699 t 0 0 0 365 381 44 71 109 89 121 1652 77 471 465

MA0162.5_shift4 (EGR1)
; oligos_7nt_mkv5_m2 versus MA0162.5 (EGR1); m=1/34; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.725193; ----mCGCCCACgC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0

MA0733.2_shift4 (EGR4)
; oligos_7nt_mkv5_m2 versus MA0733.2 (EGR4); m=2/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.656543; ----mCGCCCACGC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0

MA0732.2_shift4 (EGR3)
; oligos_7nt_mkv5_m2 versus MA0732.2 (EGR3); m=3/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.64107; ----mCGCCCMCGC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0

MA0747.2_shift2 (SP8)
; oligos_7nt_mkv5_m2 versus MA0747.2 (SP8); m=4/34; ncol2=11; w=-1; offset=-1; strand=D; shift=2; score=0.625098; --mCACgCCCmCy- ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1564.2_shift2 (SP9)
; oligos_7nt_mkv5_m2 versus MA1564.2 (SP9); m=5/34; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.62308; --cCmCGCCCmc-- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0

MA0472.2_shift4 (EGR2)
; oligos_7nt_mkv5_m2 versus MA0472.2 (EGR2); m=6/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.612032; ----mCGCCCACGC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0

MA1512.2_shift2 (KLF11)
; oligos_7nt_mkv5_m2 versus MA1512.2 (KLF11); m=7/34; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.594294; --cCACGCCCmC-- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_7nt_mkv5_m2 versus MA0742.2_rc (KLF12_rc); m=8/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.561334; --CCCCGCCCC--- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0

MA0746.3_shift1 (SP3)
; oligos_7nt_mkv5_m2 versus MA0746.3 (SP3); m=9/34; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.553067; -rCCACGCCCmC-- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_7nt_mkv5_m2 versus MA0685.2_rc (SP4_rc); m=10/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550533; --CyCCKCCCc--- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_7nt_mkv5_m2 versus MA1959.2_rc (KLF7_rc); m=11/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.548832; --CcMCGCCC---- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_7nt_mkv5_m2 versus MA0740.2_rc (KLF14_rc); m=12/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.547692; --CCMCGCCCm--- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_7nt_mkv5_m2 versus MA1511.2_rc (KLF10_rc); m=13/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.546013; --CCMCGCCCC--- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_7nt_mkv5_m2 versus MA0516.3_rc (SP2_rc); m=14/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.542138; --cCCCGCCCC--- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0

MA1517.2_shift2 (KLF6)
; oligos_7nt_mkv5_m2 versus MA1517.2 (KLF6); m=15/34; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.538692; --cCACRCCCm--- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA2099.1_shift5 (ZNF770)
; oligos_7nt_mkv5_m2 versus MA2099.1 (ZNF770); m=16/34; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.538303; -----CrGCCTCm- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0

MA0741.1_shift1 (KLF16)
; oligos_7nt_mkv5_m2 versus MA0741.1 (KLF16); m=17/34; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.537271; -gmCMCgCCCMC-- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA1102.3_rc_shift6 (CTCFL_rc)
; oligos_7nt_mkv5_m2 versus MA1102.3_rc (CTCFL_rc); m=18/34; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.533018; ------GCCCCCTG ; cor=; Ncor= a 0 0 0 0 0 0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 c 0 0 0 0 0 0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 g 0 0 0 0 0 0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 t 0 0 0 0 0 0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0

MA1513.2_shift2 (KLF15)
; oligos_7nt_mkv5_m2 versus MA1513.2 (KLF15); m=19/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.531566; --cCCCGCCC---- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0

MA1522.2_shift6 (MAZ)
; oligos_7nt_mkv5_m2 versus MA1522.2 (MAZ); m=20/34; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.521494; ------CCCCTCCc ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_7nt_mkv5_m2 versus MA0079.5_rc (SP1_rc); m=21/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.519388; --CyCCKCCCC--- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_7nt_mkv5_m2 versus MA1515.2 (KLF2); m=22/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.517645; --CCmCrCCC---- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_7nt_mkv5_m2 versus MA0493.3_rc (KLF1_rc); m=23/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.512949; --CCmCrCCC---- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_7nt_mkv5_m2 versus MA1961.2_rc (PATZ1_rc); m=24/34; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.508772; -sCCCCkCCCCs-- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0

MA0599.1_shift1 (KLF5)
; oligos_7nt_mkv5_m2 versus MA0599.1 (KLF5); m=25/34; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.498222; -gCCMCrCCCh--- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_7nt_mkv5_m2 versus MA2126.1_rc (Zfp961_rc); m=26/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.492025; --TGGCGCCC---- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0

MA1965.2_shift8 (SP5)
; oligos_7nt_mkv5_m2 versus MA1965.2 (SP5); m=27/34; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.481099; --------CCTCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0

MA0748.3_rc_shift4 (YY2_rc)
; oligos_7nt_mkv5_m2 versus MA0748.3_rc (YY2_rc); m=28/34; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.471361; ----CCGCCAT--- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0 0 0

MA0139.2_rc_shift4 (CTCF_rc)
; oligos_7nt_mkv5_m2 versus MA0139.2_rc (CTCF_rc); m=29/34; ncol2=15; w=0; offset=1; strand=R; shift=4; score=0.462427; ----syGCCmyCTr ; cor=; Ncor= a 0 0 0 0 37.0 17.0 67.0 71.0 8.0 341.0 9.0 3.0 18.0 324.0 c 0 0 0 0 307.0 507.0 5.0 775.0 890.0 504.0 566.0 903.0 32.0 48.0 g 0 0 0 0 482.0 13.0 733.0 8.0 0.0 12.0 3.0 0.0 11.0 433.0 t 0 0 0 0 82.0 372.0 104.0 56.0 12.0 54.0 333.0 5.0 851.0 107.0

MA1516.2_shift0 (KLF3)
; oligos_7nt_mkv5_m2 versus MA1516.2 (KLF3); m=30/34; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.451145; grCCrCGCCC---- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0

MA1653.2_shift6 (ZNF148)
; oligos_7nt_mkv5_m2 versus MA1653.2 (ZNF148); m=31/34; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.438796; ------CCCCTCCC ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0

MA0039.5_shift2 (KLF4)
; oligos_7nt_mkv5_m2 versus MA0039.5 (KLF4); m=32/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.425763; --CCCCACCC---- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0 0

MA1727.2_rc_shift2 (ZNF417_rc)
; oligos_7nt_mkv5_m2 versus MA1727.2_rc (ZNF417_rc); m=33/34; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.415565; --TGGCGCC----- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0 0

MA1578.2_shift7 (VEZF1)
; oligos_7nt_mkv5_m2 versus MA1578.2 (VEZF1); m=34/34; ncol2=6; w=0; offset=4; strand=D; shift=7; score=0.404404; -------CCCCCC- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift1 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=18; shift=1; ncol=19; -rrarGAGGAAGTgarrgd ; Alignment reference a 0 471 538 818 481 120 1420 66 59 1468 1432 107 152 238 773 628 569 392 428 c 0 340 302 216 130 77 40 17 18 69 65 117 85 176 256 290 324 349 370 g 0 520 492 341 727 1370 96 1503 1514 57 88 1370 135 1036 401 422 420 532 418 t 0 296 295 252 289 60 71 41 36 33 42 33 1255 177 197 287 314 354 411

MA0081.3_rc_shift2 (SPIB_rc)
; positions_7nt_m5 versus MA0081.3_rc (SPIB_rc); m=1/21; ncol2=13; w=0; offset=1; strand=R; shift=2; score=0.69195; --aaaGAGGAAGTGa---- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 0 0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 0 0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 0 0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0 0 0 0

MA0080.7_shift2 (Spi1)
; positions_7nt_m5 versus MA0080.7 (Spi1); m=2/21; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.670401; --aAAGAGGAAGTGg---- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 0 0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 0 0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 0 0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0 0 0 0

MA0687.2_shift1 (SPIC)
; positions_7nt_m5 versus MA0687.2 (SPIC); m=3/21; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.567228; -aAAWsmGGAAGTa----- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0 0 0 0

MA0062.4_rc_shift4 (GABPA_rc)
; positions_7nt_m5 versus MA0062.4_rc (GABPA_rc); m=4/21; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.475928; ----aCAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0 0 0 0

MA0474.4_shift4 (Erg)
; positions_7nt_m5 versus MA0474.4 (Erg); m=5/21; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.469358; ----aCAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0 0 0 0

MA1954.2_shift0 (FOXO1::ELK1)
; positions_7nt_m5 versus MA1954.2 (FOXO1::ELK1); m=6/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.464024; rwmAACAGGAAGt------ ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0 0 0 0

MA1956.2_shift0 (FOXO1::FLI1)
; positions_7nt_m5 versus MA1956.2 (FOXO1::FLI1); m=7/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.457811; GwmAACAGGAAGT------ ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0 0 0 0

MA0640.3_rc_shift5 (ELF3_rc)
; positions_7nt_m5 versus MA0640.3_rc (ELF3_rc); m=8/21; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.45736; -----cAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0 0 0 0

MA0598.4_rc_shift5 (EHF_rc)
; positions_7nt_m5 versus MA0598.4_rc (EHF_rc); m=9/21; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.456184; -----cAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0 0 0 0

MA1953.2_shift0 (FOXO1::ELF1)
; positions_7nt_m5 versus MA1953.2 (FOXO1::ELF1); m=10/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.455004; rtmAACAGGAAgt------ ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0 0 0 0

MA1952.2_shift2 (FOXJ2::ELF1)
; positions_7nt_m5 versus MA1952.2 (FOXJ2::ELF1); m=11/21; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.454286; --aaACmGGAAGw------ ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0 0 0 0

MA1955.2_shift0 (FOXO1::ELK3)
; positions_7nt_m5 versus MA1955.2 (FOXO1::ELK3); m=12/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.450207; rwmAACAGGAAGt------ ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0 0 0 0

MA1942.2_shift2 (ETV2::FOXI1)
; positions_7nt_m5 versus MA1942.2 (ETV2::FOXI1); m=13/21; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.442444; --aaACAGGAwRy------ ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0 0 0 0

MA0473.4_shift5 (ELF1)
; positions_7nt_m5 versus MA0473.4 (ELF1); m=14/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.438835; -----CAGGAAGTG----- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0 0 0 0

MA1652.2_shift7 (ZKSCAN5)
; positions_7nt_m5 versus MA1652.2 (ZKSCAN5); m=15/21; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.438286; -------GGArGTGAg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 0 0 0 c 0 0 0 0 0 0 0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 0 0 0 g 0 0 0 0 0 0 0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 0 0 0 t 0 0 0 0 0 0 0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 0 0 0

MA1992.2_shift5 (Ikzf3)
; positions_7nt_m5 versus MA1992.2 (Ikzf3); m=16/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.431004; -----CAGGAAGTG----- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0 0 0 0

MA0645.2_shift5 (ETV6)
; positions_7nt_m5 versus MA0645.2 (ETV6); m=17/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.428703; -----sCGGAAGTr----- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0 0 0

MA1708.2_shift5 (ETV7)
; positions_7nt_m5 versus MA1708.2 (ETV7); m=18/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.427136; -----scGGAARTr----- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0 0 0 0

MA2332.1_shift4 (ZNF175)
; positions_7nt_m5 versus MA2332.1 (ZNF175); m=19/21; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.425215; ----aCAGGAAGT------ ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0 0 0 0

MA0761.3_shift4 (ETV1)
; positions_7nt_m5 versus MA0761.3 (ETV1); m=20/21; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.416239; ----aCAGGAAGT------ ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0 0 0 0

MA1935.2_shift2 (ERF::FOXI1)
; positions_7nt_m5 versus MA1935.2 (ERF::FOXI1); m=21/21; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.409991; --aaACmGGAAr------- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=19; shift=0; ncol=19; wyyytcACTTCCTCtttyy ; Alignment reference a 435 366 327 290 205 212 1246 32 47 33 50 49 62 67 238 172 257 300 369 c 386 499 408 405 395 954 125 1334 56 59 1451 1485 110 1341 277 252 398 506 466 g 356 334 289 268 226 180 73 118 39 68 34 24 28 73 89 199 226 311 274 t 440 418 593 654 791 271 173 133 1475 1457 82 59 1417 136 1013 994 736 500 508

MA0081.3_shift4 (SPIB)
; positions_7nt_m1 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=4; strand=D; shift=4; score=0.670875; ----tCACTTCCTCttt-- ; cor=; Ncor= a 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 c 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 g 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 t 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0

MA0080.7_rc_shift4 (Spi1_rc)
; positions_7nt_m1 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.663969; ----cCACTTCCTCTTt-- ; cor=; Ncor= a 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 c 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 g 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 t 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0

MA0687.2_rc_shift5 (SPIC_rc)
; positions_7nt_m1 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=5; strand=R; shift=5; score=0.585144; -----tACTTCCksWTTt- ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0

MA1954.2_rc_shift6 (FOXO1::ELK1_rc)
; positions_7nt_m1 versus MA1954.2_rc (FOXO1::ELK1_rc); m=4/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.543642; ------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 52.0 c 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 636.0 g 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 233.0 t 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0 722.0

MA1953.2_rc_shift6 (FOXO1::ELF1_rc)
; positions_7nt_m1 versus MA1953.2_rc (FOXO1::ELF1_rc); m=5/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.536822; ------acTTCCTGTTkay ; cor=; Ncor= a 0 0 0 0 0 0 248.0 6.0 71.0 3.0 3.0 6.0 0.0 42.0 4.0 12.0 24.0 174.0 10.0 c 0 0 0 0 0 0 39.0 248.0 8.0 4.0 248.0 248.0 7.0 0.0 21.0 7.0 2.0 41.0 145.0 g 0 0 0 0 0 0 88.0 32.0 0.0 22.0 11.0 9.0 15.0 248.0 4.0 26.0 89.0 36.0 37.0 t 0 0 0 0 0 0 65.0 87.0 248.0 248.0 4.0 9.0 248.0 0.0 248.0 248.0 159.0 74.0 102.0

MA1956.2_rc_shift6 (FOXO1::FLI1_rc)
; positions_7nt_m1 versus MA1956.2_rc (FOXO1::FLI1_rc); m=6/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.534637; ------ACTTCCTGTTkwC ; cor=; Ncor= a 0 0 0 0 0 0 208.0 0.0 34.0 1.0 1.0 0.0 0.0 3.0 6.0 0.0 4.0 208.0 0.0 c 0 0 0 0 0 0 16.0 208.0 0.0 0.0 208.0 208.0 1.0 0.0 0.0 0.0 0.0 15.0 169.0 g 0 0 0 0 0 0 44.0 12.0 4.0 0.0 0.0 4.0 10.0 208.0 0.0 5.0 65.0 57.0 16.0 t 0 0 0 0 0 0 5.0 47.0 208.0 208.0 8.0 12.0 208.0 0.0 208.0 208.0 142.0 100.0 39.0

MA1955.2_rc_shift6 (FOXO1::ELK3_rc)
; positions_7nt_m1 versus MA1955.2_rc (FOXO1::ELK3_rc); m=7/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.531316; ------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 127.0 5.0 12.0 8.0 4.0 0.0 1.0 4.0 0.0 2.0 0.0 127.0 10.0 c 0 0 0 0 0 0 18.0 127.0 1.0 0.0 127.0 127.0 7.0 0.0 9.0 5.0 0.0 16.0 73.0 g 0 0 0 0 0 0 40.0 10.0 12.0 0.0 4.0 4.0 28.0 127.0 0.0 1.0 56.0 40.0 7.0 t 0 0 0 0 0 0 16.0 24.0 127.0 127.0 3.0 2.0 127.0 0.0 127.0 127.0 71.0 77.0 54.0

MA1936.2_rc_shift7 (ERF::FOXO1_rc)
; positions_7nt_m1 versus MA1936.2_rc (ERF::FOXO1_rc); m=8/24; ncol2=12; w=0; offset=7; strand=R; shift=7; score=0.468346; -------yTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 66.0 16.0 24.0 0.0 0.0 0.0 0.0 73.0 19.0 347.0 0.0 c 0 0 0 0 0 0 0 227.0 18.0 0.0 347.0 347.0 26.0 0.0 20.0 68.0 37.0 69.0 191.0 g 0 0 0 0 0 0 0 13.0 10.0 55.0 0.0 11.0 101.0 347.0 12.0 0.0 140.0 38.0 16.0 t 0 0 0 0 0 0 0 120.0 347.0 347.0 15.0 9.0 347.0 11.0 347.0 347.0 207.0 173.0 156.0

MA1952.2_rc_shift6 (FOXJ2::ELF1_rc)
; positions_7nt_m1 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=9/24; ncol2=11; w=0; offset=6; strand=R; shift=6; score=0.465754; ------wCTTCCkGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 c 0 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 g 0 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 t 0 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0

MA1946.2_rc_shift7 (ETV5::FOXI1_rc)
; positions_7nt_m1 versus MA1946.2_rc (ETV5::FOXI1_rc); m=10/24; ncol2=12; w=0; offset=7; strand=R; shift=7; score=0.463901; -------CwTCCKGTTKaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 151.0 15.0 40.0 0.0 0.0 48.0 4.0 2.0 5.0 431.0 0.0 c 0 0 0 0 0 0 0 378.0 17.0 18.0 431.0 431.0 15.0 24.0 77.0 17.0 8.0 105.0 431.0 g 0 0 0 0 0 0 0 6.0 22.0 1.0 2.0 46.0 165.0 431.0 0.0 15.0 113.0 50.0 34.0 t 0 0 0 0 0 0 0 53.0 280.0 431.0 12.0 12.0 431.0 0.0 431.0 431.0 317.0 75.0 94.0

MA0062.4_shift5 (GABPA)
; positions_7nt_m1 versus MA0062.4 (GABPA); m=11/24; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.46169; -----cACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 c 0 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 g 0 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 t 0 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0

MA0474.4_rc_shift5 (Erg_rc)
; positions_7nt_m1 versus MA0474.4_rc (Erg_rc); m=12/24; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.457775; -----cACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 c 0 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 g 0 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 t 0 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0

MA1942.2_rc_shift6 (ETV2::FOXI1_rc)
; positions_7nt_m1 versus MA1942.2_rc (ETV2::FOXI1_rc); m=13/24; ncol2=11; w=0; offset=6; strand=R; shift=6; score=0.454774; ------rYwTCCTGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 1005.0 3.0 755.0 14.0 105.0 19.0 0.0 33.0 37.0 259.0 150.0 0 0 c 0 0 0 0 0 0 163.0 1278.0 18.0 0.0 1747.0 1747.0 14.0 84.0 183.0 391.0 175.0 0 0 g 0 0 0 0 0 0 742.0 20.0 84.0 35.0 0.0 30.0 388.0 1747.0 55.0 323.0 426.0 0 0 t 0 0 0 0 0 0 247.0 469.0 1747.0 1747.0 33.0 14.0 1359.0 38.0 1747.0 1747.0 1322.0 0 0

MA1950.2_rc_shift7 (FLI1::FOXI1_rc)
; positions_7nt_m1 versus MA1950.2_rc (FLI1::FOXI1_rc); m=14/24; ncol2=11; w=0; offset=7; strand=R; shift=7; score=0.436559; -------ywTCCTGTTta- ; cor=; Ncor= a 0 0 0 0 0 0 0 59.0 782.0 19.0 18.0 25.0 0.0 36.0 49.0 192.0 171.0 1768.0 0 c 0 0 0 0 0 0 0 1003.0 39.0 13.0 1768.0 1768.0 43.0 50.0 123.0 165.0 242.0 377.0 0 g 0 0 0 0 0 0 0 63.0 91.0 33.0 0.0 0.0 292.0 1768.0 1.0 183.0 454.0 493.0 0 t 0 0 0 0 0 0 0 764.0 1768.0 1768.0 0.0 45.0 1476.0 28.0 1768.0 1768.0 1768.0 394.0 0

MA0640.3_shift5 (ELF3)
; positions_7nt_m1 versus MA0640.3 (ELF3); m=15/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.433997; -----cACTTCCTg----- ; cor=; Ncor= a 0 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 c 0 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 g 0 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 t 0 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0

MA0598.4_shift5 (EHF)
; positions_7nt_m1 versus MA0598.4 (EHF); m=16/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.432845; -----cACTTCCTg----- ; cor=; Ncor= a 0 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 c 0 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 g 0 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 t 0 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0

MA1935.2_rc_shift7 (ERF::FOXI1_rc)
; positions_7nt_m1 versus MA1935.2_rc (ERF::FOXI1_rc); m=17/24; ncol2=10; w=0; offset=7; strand=R; shift=7; score=0.416441; -------yTTCCkGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 c 0 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 g 0 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 t 0 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0

MA0473.4_rc_shift5 (ELF1_rc)
; positions_7nt_m1 versus MA0473.4_rc (ELF1_rc); m=18/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.415283; -----CACTTCCTG----- ; cor=; Ncor= a 0 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 c 0 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 g 0 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 t 0 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0

MA2332.1_rc_shift6 (ZNF175_rc)
; positions_7nt_m1 versus MA2332.1_rc (ZNF175_rc); m=19/24; ncol2=9; w=0; offset=6; strand=R; shift=6; score=0.414887; ------ACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 c 0 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 g 0 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 t 0 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0

MA1652.2_rc_shift3 (ZKSCAN5_rc)
; positions_7nt_m1 versus MA1652.2_rc (ZKSCAN5_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.409488; ---cTCACyTCC------- ; cor=; Ncor= a 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 c 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 g 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 t 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0

MA1992.2_rc_shift5 (Ikzf3_rc)
; positions_7nt_m1 versus MA1992.2_rc (Ikzf3_rc); m=21/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.407731; -----CACTTCCTG----- ; cor=; Ncor= a 0 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 c 0 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 g 0 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 t 0 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0

MA0645.2_rc_shift5 (ETV6_rc)
; positions_7nt_m1 versus MA0645.2_rc (ETV6_rc); m=22/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.405864; -----yACTTCCGs----- ; cor=; Ncor= a 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 c 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 g 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 t 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0

MA0761.3_rc_shift6 (ETV1_rc)
; positions_7nt_m1 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=6; strand=R; shift=6; score=0.405007; ------ACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 c 0 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 g 0 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 t 0 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0

MA1708.2_rc_shift5 (ETV7_rc)
; positions_7nt_m1 versus MA1708.2_rc (ETV7_rc); m=24/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.404527; -----yAYTTCCgs----- ; cor=; Ncor= a 0 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 c 0 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 g 0 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 t 0 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift2 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --yycACTTCCytcttyyy ; Alignment reference a 0 0 441 415 262 1733 33 62 36 57 37 227 286 287 271 282 294 418 419 c 0 0 544 588 1274 105 1809 80 62 1843 1830 1108 473 945 372 435 748 582 566 g 0 0 401 408 219 84 74 92 70 32 29 144 236 291 244 305 406 420 478 t 0 0 610 585 241 74 80 1762 1828 64 100 517 1001 473 1109 974 548 576 533

MA0081.3_shift3 (SPIB)
; positions_6nt_m2 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.670555; ---tCACTTCCTCttt--- ; cor=; Ncor= a 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 0 c 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 0 g 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 0 t 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0 0

MA0080.7_rc_shift3 (Spi1_rc)
; positions_6nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=1; strand=R; shift=3; score=0.63891; ---cCACTTCCTCTTt--- ; cor=; Ncor= a 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 0 c 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 0 g 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 0 t 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0 0

MA0687.2_rc_shift4 (SPIC_rc)
; positions_6nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=2; strand=R; shift=4; score=0.58868; ----tACTTCCksWTTt-- ; cor=; Ncor= a 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 0 c 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 0 g 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 0 t 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0 0

MA0641.1_rc_shift4 (ELF4_rc)
; positions_6nt_m2 versus MA0641.1_rc (ELF4_rc); m=4/24; ncol2=12; w=0; offset=2; strand=R; shift=4; score=0.531505; ----yACTTCCGGGTt--- ; cor=; Ncor= a 0 0 0 0 113.0 979.0 6.0 4.0 2.0 2.0 0.0 0.0 1.0 106.0 149.0 192.0 0 0 0 c 0 0 0 0 463.0 28.0 1207.0 2.0 2.0 1226.0 1226.0 6.0 105.0 75.0 15.0 160.0 0 0 0 g 0 0 0 0 83.0 56.0 18.0 5.0 0.0 0.0 0.0 997.0 990.0 930.0 73.0 109.0 0 0 0 t 0 0 0 0 403.0 4.0 43.0 737.0 739.0 0.0 1.0 54.0 17.0 198.0 705.0 598.0 0 0 0

MA1952.2_rc_shift5 (FOXJ2::ELF1_rc)
; positions_6nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/24; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.488953; -----wCTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 0 c 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 0 g 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 0 t 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0 0

MA0062.4_shift4 (GABPA)
; positions_6nt_m2 versus MA0062.4 (GABPA); m=6/24; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.481264; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 0 c 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 0 g 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 0 t 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0 0

MA0474.4_rc_shift4 (Erg_rc)
; positions_6nt_m2 versus MA0474.4_rc (Erg_rc); m=7/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.469729; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 0 c 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 0 g 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 0 t 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0 0

MA0598.4_shift4 (EHF)
; positions_6nt_m2 versus MA0598.4 (EHF); m=8/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.468711; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 0 c 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 0 g 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 0 t 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0 0

MA1708.2_rc_shift4 (ETV7_rc)
; positions_6nt_m2 versus MA1708.2_rc (ETV7_rc); m=9/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.463677; ----yAYTTCCgs------ ; cor=; Ncor= a 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 0 c 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 0 g 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 0 t 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0 0

MA0640.3_shift4 (ELF3)
; positions_6nt_m2 versus MA0640.3 (ELF3); m=10/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.462155; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 0 c 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 0 g 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 0 t 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0 0

MA0645.2_rc_shift4 (ETV6_rc)
; positions_6nt_m2 versus MA0645.2_rc (ETV6_rc); m=11/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.455512; ----yACTTCCGs------ ; cor=; Ncor= a 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 0 c 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 0 g 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 0 t 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0 0

MA1957.1_rc_shift0 (HOXB2::ELK1_rc)
; positions_6nt_m2 versus MA1957.1_rc (HOXB2::ELK1_rc); m=12/24; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.450743; TAAykACTTCCGgy----- ; cor=; Ncor= a 218.0 1338.0 1338.0 80.0 163.0 1338.0 3.0 88.0 4.0 7.0 6.0 19.0 45.0 130.0 0 0 0 0 0 c 161.0 47.0 38.0 524.0 195.0 22.0 1338.0 18.0 0.0 1338.0 1338.0 6.0 319.0 602.0 0 0 0 0 0 g 64.0 352.0 48.0 43.0 799.0 159.0 24.0 0.0 0.0 0.0 0.0 1338.0 1019.0 94.0 0 0 0 0 0 t 1338.0 88.0 38.0 814.0 539.0 11.0 48.0 1338.0 1338.0 0.0 8.0 54.0 117.0 737.0 0 0 0 0 0

MA1652.2_rc_shift2 (ZKSCAN5_rc)
; positions_6nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=13/24; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.450648; --cTCACyTCC-------- ; cor=; Ncor= a 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 0 c 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 0 g 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 0 t 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0 0

MA0473.4_rc_shift4 (ELF1_rc)
; positions_6nt_m2 versus MA0473.4_rc (ELF1_rc); m=14/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.448943; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 0 c 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 0 g 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 0 t 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0 0

MA1483.3_rc_shift5 (ELF2_rc)
; positions_6nt_m2 versus MA1483.3_rc (ELF2_rc); m=15/24; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.44864; -----ACTTCCGGkw---- ; cor=; Ncor= a 0 0 0 0 0 84429.0 382.0 1811.0 159.0 20.0 18.0 12.0 228.0 13118.0 39326.0 0 0 0 0 c 0 0 0 0 0 4604.0 84429.0 41.0 10.0 84429.0 84429.0 231.0 14852.0 6180.0 10017.0 0 0 0 0 g 0 0 0 0 0 12976.0 5077.0 58.0 51.0 16.0 22.0 84429.0 84429.0 54007.0 12629.0 0 0 0 0 t 0 0 0 0 0 6161.0 28882.0 84429.0 84429.0 21.0 15.0 13644.0 7116.0 30422.0 84429.0 0 0 0 0

MA1992.2_rc_shift4 (Ikzf3_rc)
; positions_6nt_m2 versus MA1992.2_rc (Ikzf3_rc); m=16/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.436606; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 0 c 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 0 g 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 0 t 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0 0

MA2340.1_rc_shift4 (Zbtb2_rc)
; positions_6nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=17/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.435503; ----CaCTTCCGGT----- ; cor=; Ncor= a 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 0 0 c 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 0 0 g 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 0 0 t 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0 0 0

MA1935.2_rc_shift6 (ERF::FOXI1_rc)
; positions_6nt_m2 versus MA1935.2_rc (ERF::FOXI1_rc); m=18/24; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.435493; ------yTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 0 c 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 0 g 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 0 t 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0 0

MA2329.1_shift4 (ZBTB11)
; positions_6nt_m2 versus MA2329.1 (ZBTB11); m=19/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.430684; ----CACTTCCGG------ ; cor=; Ncor= a 0 0 0 0 128.0 1935.0 13.0 79.0 38.0 29.0 15.0 25.0 44.0 0 0 0 0 0 0 c 0 0 0 0 1926.0 120.0 2192.0 39.0 33.0 2342.0 2328.0 74.0 230.0 0 0 0 0 0 0 g 0 0 0 0 188.0 262.0 84.0 101.0 31.0 15.0 25.0 1977.0 2030.0 0 0 0 0 0 0 t 0 0 0 0 153.0 78.0 106.0 2176.0 2293.0 9.0 27.0 319.0 91.0 0 0 0 0 0 0

MA2332.1_rc_shift5 (ZNF175_rc)
; positions_6nt_m2 versus MA2332.1_rc (ZNF175_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.42643; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 0 c 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 0 g 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 0 t 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0 0

MA0136.4_rc_shift5 (Elf5_rc)
; positions_6nt_m2 versus MA0136.4_rc (Elf5_rc); m=21/24; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.423603; -----ACTTCCTT------ ; cor=; Ncor= a 0 0 0 0 0 28663.0 500.0 724.0 280.0 423.0 427.0 341.0 1450.0 0 0 0 0 0 0 c 0 0 0 0 0 4948.0 37803.0 481.0 390.0 40626.0 41025.0 2049.0 5204.0 0 0 0 0 0 0 g 0 0 0 0 0 3355.0 1234.0 389.0 580.0 510.0 182.0 978.0 6065.0 0 0 0 0 0 0 t 0 0 0 0 0 5180.0 2609.0 40552.0 40896.0 587.0 512.0 38778.0 29427.0 0 0 0 0 0 0

MA0750.3_rc_shift4 (ZBTB7A_rc)
; positions_6nt_m2 versus MA0750.3_rc (ZBTB7A_rc); m=22/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.421047; ----caCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 1270.0 8444.0 189.0 318.0 178.0 125.0 128.0 234.0 199.0 0 0 0 0 0 0 c 0 0 0 0 9142.0 1623.0 13112.0 261.0 335.0 14239.0 14130.0 624.0 1496.0 0 0 0 0 0 0 g 0 0 0 0 2485.0 3433.0 711.0 343.0 274.0 163.0 210.0 11293.0 12469.0 0 0 0 0 0 0 t 0 0 0 0 1744.0 1141.0 629.0 13719.0 13854.0 114.0 173.0 2490.0 477.0 0 0 0 0 0 0

MA0761.3_rc_shift5 (ETV1_rc)
; positions_6nt_m2 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.417772; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 0 c 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 0 g 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 0 t 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0 0

MA0076.3_shift4 (ELK4)
; positions_6nt_m2 versus MA0076.3 (ELK4); m=24/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.410498; ----crCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 391.0 2034.0 0.0 8.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0 0 1905.0 145.0 2688.0 0.0 0.0 3427.0 3427.0 0.0 501.0 0 0 0 0 0 0 g 0 0 0 0 570.0 1038.0 16.0 0.0 0.0 0.0 0.0 2915.0 2843.0 0 0 0 0 0 0 t 0 0 0 0 561.0 210.0 723.0 3419.0 3427.0 0.0 0.0 512.0 83.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift3 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=18; shift=3; ncol=21; ---wcttTCACTTCCCcttyy ; Alignment reference a 0 0 0 271 222 149 116 70 59 765 22 33 26 34 35 61 105 122 124 181 176 c 0 0 0 236 327 215 201 135 820 93 851 34 35 864 863 729 671 151 167 323 349 g 0 0 0 207 205 121 106 90 41 41 55 26 23 30 22 24 46 85 125 168 169 t 0 0 0 281 241 510 572 700 75 96 67 902 911 67 75 181 173 637 579 323 301

MA0081.3_shift7 (SPIB)
; positions_7nt_m2 versus MA0081.3 (SPIB); m=1/15; ncol2=13; w=0; offset=4; strand=D; shift=7; score=0.668293; -------tCACTTCCTCttt- ; cor=; Ncor= a 0 0 0 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 c 0 0 0 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 g 0 0 0 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 t 0 0 0 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0

MA0080.7_rc_shift7 (Spi1_rc)
; positions_7nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/15; ncol2=13; w=0; offset=4; strand=R; shift=7; score=0.620013; -------cCACTTCCTCTTt- ; cor=; Ncor= a 0 0 0 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 c 0 0 0 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 g 0 0 0 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 t 0 0 0 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0

MA0687.2_rc_shift8 (SPIC_rc)
; positions_7nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/15; ncol2=13; w=0; offset=5; strand=R; shift=8; score=0.564582; --------tACTTCCksWTTt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 c 0 0 0 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 g 0 0 0 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 t 0 0 0 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0

MA0517.2_shift3 (STAT1::STAT2)
; positions_7nt_m2 versus MA0517.2 (STAT1::STAT2); m=4/15; ncol2=13; w=0; offset=0; strand=D; shift=3; score=0.513646; ---AGTTTCrkTTYCy----- ; cor=; Ncor= a 0 0 0 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 0 0 0 0 c 0 0 0 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 0 0 0 0 g 0 0 0 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 0 0 0 0 t 0 0 0 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0 0 0 0 0

MA1952.2_rc_shift9 (FOXJ2::ELF1_rc)
; positions_7nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/15; ncol2=11; w=0; offset=6; strand=R; shift=9; score=0.451026; ---------wCTTCCkGTtt- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 c 0 0 0 0 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 g 0 0 0 0 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 t 0 0 0 0 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0

MA0051.2_rc_shift0 (IRF2_rc)
; positions_7nt_m2 versus MA0051.2_rc (IRF2_rc); m=6/15; ncol2=16; w=-3; offset=-3; strand=R; shift=0; score=0.44982; wwyrsTTTCrCTTTCs----- ; cor=; Ncor= a 4.0 4.0 2.0 3.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 0 c 1.0 2.0 3.0 2.0 6.0 0.0 0.0 0.0 12.0 0.0 10.0 0.0 0.0 0.0 10.0 7.0 0 0 0 0 0 g 1.0 0.0 2.0 7.0 6.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 4.0 0 0 0 0 0 t 6.0 6.0 5.0 0.0 0.0 12.0 12.0 12.0 0.0 0.0 2.0 12.0 11.0 12.0 2.0 0.0 0 0 0 0 0

MA1954.2_rc_shift9 (FOXO1::ELK1_rc)
; positions_7nt_m2 versus MA1954.2_rc (FOXO1::ELK1_rc); m=7/15; ncol2=13; w=0; offset=6; strand=R; shift=9; score=0.445273; ---------aCTTCCTGTTkw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 c 0 0 0 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 g 0 0 0 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 t 0 0 0 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0

MA1652.2_rc_shift6 (ZKSCAN5_rc)
; positions_7nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=8/15; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.444139; ------cTCACyTCC------ ; cor=; Ncor= a 0 0 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 g 0 0 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 t 0 0 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0

MA0062.4_shift8 (GABPA)
; positions_7nt_m2 versus MA0062.4 (GABPA); m=9/15; ncol2=10; w=0; offset=5; strand=D; shift=8; score=0.433321; --------cACTTCCTGt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 c 0 0 0 0 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 g 0 0 0 0 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 t 0 0 0 0 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0

MA1708.2_rc_shift8 (ETV7_rc)
; positions_7nt_m2 versus MA1708.2_rc (ETV7_rc); m=10/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.427293; --------yAYTTCCgs---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 c 0 0 0 0 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 g 0 0 0 0 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 t 0 0 0 0 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0

MA0474.4_rc_shift8 (Erg_rc)
; positions_7nt_m2 versus MA0474.4_rc (Erg_rc); m=11/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.426021; --------cACTTCCTGt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 c 0 0 0 0 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 g 0 0 0 0 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 t 0 0 0 0 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0

MA0645.2_rc_shift8 (ETV6_rc)
; positions_7nt_m2 versus MA0645.2_rc (ETV6_rc); m=12/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.421976; --------yACTTCCGs---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 c 0 0 0 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 g 0 0 0 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 t 0 0 0 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0

MA2340.1_rc_shift8 (Zbtb2_rc)
; positions_7nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=13/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.412053; --------CaCTTCCGGT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 c 0 0 0 0 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 g 0 0 0 0 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 t 0 0 0 0 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0

MA0598.4_shift8 (EHF)
; positions_7nt_m2 versus MA0598.4 (EHF); m=14/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.408261; --------cACTTCCTg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 c 0 0 0 0 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 g 0 0 0 0 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 t 0 0 0 0 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0

MA0640.3_shift8 (ELF3)
; positions_7nt_m2 versus MA0640.3 (ELF3); m=15/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.401853; --------cACTTCCTg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 c 0 0 0 0 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 g 0 0 0 0 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 t 0 0 0 0 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift3 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 372 410 59 93 51 117 68 76 298 464 c 0 0 0 1337 997 2794 116 2543 2438 2546 291 1290 1087 g 0 0 0 982 1340 143 2750 377 346 302 2612 1060 1140 t 0 0 0 366 310 61 98 86 156 141 78 409 366

MA1564.2_shift2 (SP9)
; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=1/25; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.606792; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA0162.5_shift4 (EGR1)
; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=2/25; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.596297; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.584478; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1513.2_shift2 (KLF15)
; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=4/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.568985; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA0131.3_shift4 (HINFP)
; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=5/25; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.565927; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=6/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.55944; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.555856; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=8/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.555144; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=9/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550314; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=10/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.545518; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_6nt_mkv4_m1 versus MA1961.2_rc (PATZ1_rc); m=11/25; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.545297; -sCCCCkCCCCs- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0

MA0733.2_shift4 (EGR4)
; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=12/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.545142; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=13/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.544991; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA0746.3_shift1 (SP3)
; oligos_6nt_mkv4_m1 versus MA0746.3 (SP3); m=14/25; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.539661; -rCCACGCCCmC- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=15/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536192; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0732.2_shift4 (EGR3)
; oligos_6nt_mkv4_m1 versus MA0732.2 (EGR3); m=16/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534391; ----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_6nt_mkv4_m1 versus MA0516.3_rc (SP2_rc); m=17/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.531318; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_6nt_mkv4_m1 versus MA0079.5_rc (SP1_rc); m=18/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.525542; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA1517.2_shift2 (KLF6)
; oligos_6nt_mkv4_m1 versus MA1517.2 (KLF6); m=19/25; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.519698; --cCACRCCCm-- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0

MA1516.2_shift0 (KLF3)
; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=20/25; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.483577; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0

MA1727.2_rc_shift2 (ZNF417_rc)
; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=21/25; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.472601; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0

MA0039.5_shift2 (KLF4)
; oligos_6nt_mkv4_m1 versus MA0039.5 (KLF4); m=22/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.448923; --CCCCACCC--- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA0471.3_rc_shift1 (E2F6_rc)
; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=23/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.420916; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

MA0865.3_shift1 (E2F8)
; oligos_6nt_mkv4_m1 versus MA0865.3 (E2F8); m=24/25; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.412997; -tTCCCGCcA--- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=25/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.406837; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift1 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift1 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=12; shift=1; ncol=13; -sggGCAGGGCss ; Alignment reference a 0 570 626 258 243 54 2018 38 90 68 60 563 492 c 0 835 701 436 435 2632 293 113 258 51 2672 843 803 g 0 972 1068 1883 2040 112 427 2639 2438 2694 72 877 1099 t 0 473 455 273 132 52 112 60 64 37 46 567 456

MA0597.3_shift4 (THAP1)
; oligos_6nt_mkv4_m2 versus MA0597.3 (THAP1); m=1/16; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.588208; ----gcAGGGCA- ; cor=; Ncor= a 0 0 0 0 477.0 553.0 4731.0 22.0 40.0 91.0 98.0 4900.0 0 c 0 0 0 0 966.0 3351.0 219.0 127.0 183.0 67.0 4861.0 95.0 0 g 0 0 0 0 3186.0 933.0 220.0 4958.0 4893.0 4942.0 104.0 172.0 0 t 0 0 0 0 549.0 341.0 8.0 71.0 62.0 78.0 115.0 11.0 0

MA0742.2_shift1 (KLF12)
; oligos_6nt_mkv4_m2 versus MA0742.2 (KLF12); m=2/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.576729; -GGGGCGGGG--- ; cor=; Ncor= a 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0

MA0516.3_shift1 (SP2)
; oligos_6nt_mkv4_m2 versus MA0516.3 (SP2); m=3/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.557931; -GGGGCGGGg--- ; cor=; Ncor= a 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0

MA1722.2_rc_shift1 (ZSCAN31_rc)
; oligos_6nt_mkv4_m2 versus MA1722.2_rc (ZSCAN31_rc); m=4/16; ncol2=18; w=0; offset=0; strand=R; shift=1; score=0.554601; -GmmGCAGGGCAr ; cor=; Ncor= a 0 990.0 3109.0 2569.0 120.0 10.0 6989.0 69.0 291.0 22.0 90.0 6181.0 3376.0 c 0 457.0 3084.0 4197.0 3.0 7143.0 26.0 122.0 14.0 9.0 7077.0 960.0 3.0 g 0 6344.0 1112.0 173.0 7114.0 0.0 438.0 7073.0 7066.0 7141.0 80.0 11.0 6451.0 t 0 640.0 1651.0 1811.0 28.0 22.0 37.0 28.0 51.0 9.0 11.0 42.0 38.0

MA0685.2_shift1 (SP4)
; oligos_6nt_mkv4_m2 versus MA0685.2 (SP4); m=5/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.548004; -gGGGMGGrG--- ; cor=; Ncor= a 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0

MA1511.2_shift1 (KLF10)
; oligos_6nt_mkv4_m2 versus MA1511.2 (KLF10); m=6/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.543351; -GGGGCGKGG--- ; cor=; Ncor= a 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0

MA2328.1_rc_shift4 (ZBED4_rc)
; oligos_6nt_mkv4_m2 versus MA2328.1_rc (ZBED4_rc); m=7/16; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.542909; ----GCGGrGCGg ; cor=; Ncor= a 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 c 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 g 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 t 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0

MA1961.2_shift0 (PATZ1)
; oligos_6nt_mkv4_m2 versus MA1961.2 (PATZ1); m=8/16; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.542038; sGGGGmGGGGs-- ; cor=; Ncor= a 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0

MA0740.2_shift1 (KLF14)
; oligos_6nt_mkv4_m2 versus MA0740.2 (KLF14); m=9/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.533352; -kGGGCGKGG--- ; cor=; Ncor= a 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0

MA1513.2_rc_shift2 (KLF15_rc)
; oligos_6nt_mkv4_m2 versus MA1513.2_rc (KLF15_rc); m=10/16; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.506257; --GGGCGGGg--- ; cor=; Ncor= a 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0

MA2341.1_rc_shift2 (FEZF2_rc)
; oligos_6nt_mkv4_m2 versus MA2341.1_rc (FEZF2_rc); m=11/16; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.492192; --AGGCTGGG--- ; cor=; Ncor= a 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 c 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 g 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 t 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0

MA1959.2_shift2 (KLF7)
; oligos_6nt_mkv4_m2 versus MA1959.2 (KLF7); m=12/16; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.485121; --GGGCGKgG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0

MA0493.3_shift2 (KLF1)
; oligos_6nt_mkv4_m2 versus MA0493.3 (KLF1); m=13/16; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.469121; --GGGyGkGG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0

MA1629.2_shift0 (Zic2)
; oligos_6nt_mkv4_m2 versus MA1629.2 (Zic2); m=14/16; ncol2=9; w=-1; offset=-1; strand=D; shift=0; score=0.44206; CaCAGCAGG---- ; cor=; Ncor= a 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 0 0 0 0 c 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 0 0 0 0 g 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 0 0 0 0 t 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 0 0 0 0

MA1628.2_shift2 (Zic1::Zic2)
; oligos_6nt_mkv4_m2 versus MA1628.2 (Zic1::Zic2); m=15/16; ncol2=7; w=0; offset=1; strand=D; shift=2; score=0.434164; --CAGCAGG---- ; cor=; Ncor= a 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 0 0 0 0 c 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 0 0 0 0 g 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 0 0 0 0 t 0 0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 0 0 0 0

MA0697.3_shift2 (Zic3)
; oligos_6nt_mkv4_m2 versus MA0697.3 (Zic3); m=16/16; ncol2=7; w=0; offset=1; strand=D; shift=2; score=0.433055; --CAGCAGG---- ; cor=; Ncor= a 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 347.0 0 0 0 0 c 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 955.0 0 0 0 0 g 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 24340.0 0 0 0 0 t 0 0 334.0 596.0 266.0 792.0 858.0 967.0 532.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift1 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -ssCGGCCGss ; Alignment reference a 0 393 386 81 96 51 86 63 53 357 459 c 0 1492 1091 3099 459 447 2875 2847 226 1631 1113 g 0 1115 1631 226 2837 2875 447 459 3098 1090 1492 t 0 459 351 53 67 86 51 90 82 381 395

MA0131.3_shift2 (HINFP)
; oligos_6nt_mkv4_m3 versus MA0131.3 (HINFP); m=1/2; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.569729; --rCGTCCGC- ; cor=; Ncor= a 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0

MA1721.2_rc_shift0 (ZNF93_rc)
; oligos_6nt_mkv4_m3 versus MA1721.2_rc (ZNF93_rc); m=2/2; ncol2=14; w=-1; offset=-1; strand=R; shift=0; score=0.501314; CCGCTGCyGmy ; cor=; Ncor= a 37.0 126.0 44.0 10.0 57.0 44.0 10.0 32.0 50.0 730.0 93.0 c 2145.0 1784.0 33.0 2328.0 576.0 42.0 2334.0 1263.0 22.0 1483.0 663.0 g 134.0 138.0 2292.0 20.0 96.0 2279.0 26.0 92.0 2278.0 114.0 177.0 t 72.0 340.0 19.0 30.0 1659.0 23.0 18.0 1001.0 38.0 61.0 1455.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift3 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift3 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---twCTTTTTCwh ; Alignment reference a 0 0 0 339 479 139 106 163 104 111 73 86 472 454 c 0 0 0 313 342 1448 25 41 35 38 31 1507 366 434 g 0 0 0 353 307 41 44 51 33 39 18 29 167 293 t 0 0 0 680 557 57 1510 1430 1513 1497 1563 63 680 504

MA1125.2_rc_shift3 (ZNF384_rc)
; oligos_7nt_mkv5_m5 versus MA1125.2_rc (ZNF384_rc); m=1/9; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.561373; ---ttTTTTTT--- ; cor=; Ncor= a 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0

MA1623.2_rc_shift2 (Stat2_rc)
; oligos_7nt_mkv5_m5 versus MA1623.2_rc (Stat2_rc); m=2/9; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.558784; --TTTCTGTTTc-- ; cor=; Ncor= a 0 0 141.0 69.0 47.0 55.0 588.0 242.0 62.0 77.0 161.0 397.0 0 0 c 0 0 157.0 98.0 163.0 3707.0 74.0 524.0 87.0 71.0 168.0 2287.0 0 0 g 0 0 147.0 45.0 49.0 45.0 151.0 2907.0 72.0 75.0 76.0 306.0 0 0 t 0 0 3514.0 3747.0 3700.0 152.0 3146.0 286.0 3738.0 3736.0 3554.0 969.0 0 0

MA0606.3_rc_shift6 (Nfat5_rc)
; oligos_7nt_mkv5_m5 versus MA0606.3_rc (Nfat5_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.51179; ------TTTTCCAT ; cor=; Ncor= a 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 c 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 g 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 t 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0

MA0508.4_shift5 (PRDM1)
; oligos_7nt_mkv5_m5 versus MA0508.4 (PRDM1); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.506922; -----CTTTCTC-- ; cor=; Ncor= a 0 0 0 0 0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 0 0 c 0 0 0 0 0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 0 0 g 0 0 0 0 0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 0 0 t 0 0 0 0 0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 0 0

MA0517.2_shift0 (STAT1::STAT2)
; oligos_7nt_mkv5_m5 versus MA0517.2 (STAT1::STAT2); m=5/9; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.506829; AGTTTCrkTTYCy- ; cor=; Ncor= a 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 c 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 g 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 t 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0

MA1525.3_rc_shift6 (NFATC4_rc)
; oligos_7nt_mkv5_m5 versus MA1525.3_rc (NFATC4_rc); m=6/9; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.495057; ------wkTTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0

MA0624.3_rc_shift8 (Nfatc1_rc)
; oligos_7nt_mkv5_m5 versus MA0624.3_rc (Nfatc1_rc); m=7/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.440345; --------TTTCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0

MA0625.3_rc_shift8 (NFATC3_rc)
; oligos_7nt_mkv5_m5 versus MA0625.3_rc (NFATC3_rc); m=8/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.427359; --------tTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0

MA0442.3_rc_shift5 (SOX10_rc)
; oligos_7nt_mkv5_m5 versus MA0442.3_rc (SOX10_rc); m=9/9; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.420687; -----CTTTGT--- ; cor=; Ncor= a 0 0 0 0 0 20.0 61.0 39.0 12.0 52.0 25.0 0 0 0 c 0 0 0 0 0 2012.0 12.0 20.0 7.0 11.0 3.0 0 0 0 g 0 0 0 0 0 13.0 23.0 28.0 7.0 1989.0 4.0 0 0 0 t 0 0 0 0 0 10.0 1959.0 1968.0 2029.0 3.0 2023.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---waCAAAAACwa ; Alignment reference a 0 0 0 601 795 56 1632 1487 1581 1500 1670 44 779 614 c 0 0 0 292 316 1527 39 110 100 123 42 1554 262 407 g 0 0 0 324 283 39 29 81 34 41 22 18 234 327 t 0 0 0 570 393 165 87 109 72 123 53 171 512 439

MA1125.2_shift6 (ZNF384)
; oligos_7nt_mkv5_m4 versus MA1125.2 (ZNF384); m=1/5; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.559348; ------AAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0

MA1623.2_shift1 (Stat2)
; oligos_7nt_mkv5_m4 versus MA1623.2 (Stat2); m=2/5; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.432602; -gAAACAGAAA--- ; cor=; Ncor= a 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0

MA0847.4_shift0 (FOXD2)
; oligos_7nt_mkv5_m4 versus MA0847.4 (FOXD2); m=3/5; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.419807; yTAAryAAACA--- ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0

MA0869.3_shift2 (Sox11)
; oligos_7nt_mkv5_m4 versus MA0869.3 (Sox11); m=4/5; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.41166; --GAACAAAG---- ; cor=; Ncor= a 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 0 c 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 0 g 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 0 t 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0 0

MA1616.2_shift6 (Prdm15)
; oligos_7nt_mkv5_m4 versus MA1616.2 (Prdm15); m=5/5; ncol2=11; w=0; offset=3; strand=D; shift=6; score=0.400138; ------gAAAACCT ; cor=; Ncor= a 0 0 0 0 0 0 252.0 2011.0 2121.0 1942.0 1801.0 67.0 222.0 220.0 c 0 0 0 0 0 0 325.0 60.0 34.0 47.0 138.0 1941.0 1886.0 361.0 g 0 0 0 0 0 0 1333.0 135.0 58.0 200.0 152.0 101.0 107.0 28.0 t 0 0 0 0 0 0 327.0 31.0 24.0 48.0 146.0 128.0 22.0 1628.0

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)
; positions_7nt_m4; m=0 (reference); ncol1=23; shift=0; ncol=23; wwaaagaggaACTTCCTCtttyh ; Alignment reference a 163 153 234 313 313 106 317 99 103 311 485 24 24 10 24 25 33 28 92 65 105 143 151 c 136 127 122 83 75 114 77 85 108 105 29 481 26 25 504 498 36 477 96 95 139 145 169 g 131 139 111 83 101 278 80 276 253 79 28 32 17 29 20 22 9 36 30 76 86 112 98 t 145 156 108 96 86 77 101 115 111 80 33 38 508 511 27 30 497 34 357 339 245 175 157

MA0080.7_rc_shift8 (Spi1_rc)
; positions_7nt_m4 versus MA0080.7_rc (Spi1_rc); m=1/7; ncol2=13; w=0; offset=8; strand=R; shift=8; score=0.510878; --------cCACTTCCTCTTt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 c 0 0 0 0 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 g 0 0 0 0 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 t 0 0 0 0 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0

MA0081.3_shift8 (SPIB)
; positions_7nt_m4 versus MA0081.3 (SPIB); m=2/7; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.503594; --------tCACTTCCTCttt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 c 0 0 0 0 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 g 0 0 0 0 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 t 0 0 0 0 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0

MA0687.2_rc_shift9 (SPIC_rc)
; positions_7nt_m4 versus MA0687.2_rc (SPIC_rc); m=3/7; ncol2=13; w=0; offset=9; strand=R; shift=9; score=0.48243; ---------tACTTCCksWTTt- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 c 0 0 0 0 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 g 0 0 0 0 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 t 0 0 0 0 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0

MA1954.2_rc_shift10 (FOXO1::ELK1_rc)
; positions_7nt_m4 versus MA1954.2_rc (FOXO1::ELK1_rc); m=4/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.446412; ----------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 52.0 c 0 0 0 0 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 636.0 g 0 0 0 0 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 233.0 t 0 0 0 0 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0 722.0

MA1956.2_rc_shift10 (FOXO1::FLI1_rc)
; positions_7nt_m4 versus MA1956.2_rc (FOXO1::FLI1_rc); m=5/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.443609; ----------ACTTCCTGTTkwC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 208.0 0.0 34.0 1.0 1.0 0.0 0.0 3.0 6.0 0.0 4.0 208.0 0.0 c 0 0 0 0 0 0 0 0 0 0 16.0 208.0 0.0 0.0 208.0 208.0 1.0 0.0 0.0 0.0 0.0 15.0 169.0 g 0 0 0 0 0 0 0 0 0 0 44.0 12.0 4.0 0.0 0.0 4.0 10.0 208.0 0.0 5.0 65.0 57.0 16.0 t 0 0 0 0 0 0 0 0 0 0 5.0 47.0 208.0 208.0 8.0 12.0 208.0 0.0 208.0 208.0 142.0 100.0 39.0

MA1953.2_rc_shift10 (FOXO1::ELF1_rc)
; positions_7nt_m4 versus MA1953.2_rc (FOXO1::ELF1_rc); m=6/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.44198; ----------acTTCCTGTTkay ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 248.0 6.0 71.0 3.0 3.0 6.0 0.0 42.0 4.0 12.0 24.0 174.0 10.0 c 0 0 0 0 0 0 0 0 0 0 39.0 248.0 8.0 4.0 248.0 248.0 7.0 0.0 21.0 7.0 2.0 41.0 145.0 g 0 0 0 0 0 0 0 0 0 0 88.0 32.0 0.0 22.0 11.0 9.0 15.0 248.0 4.0 26.0 89.0 36.0 37.0 t 0 0 0 0 0 0 0 0 0 0 65.0 87.0 248.0 248.0 4.0 9.0 248.0 0.0 248.0 248.0 159.0 74.0 102.0

MA1955.2_rc_shift10 (FOXO1::ELK3_rc)
; positions_7nt_m4 versus MA1955.2_rc (FOXO1::ELK3_rc); m=7/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.438292; ----------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 127.0 5.0 12.0 8.0 4.0 0.0 1.0 4.0 0.0 2.0 0.0 127.0 10.0 c 0 0 0 0 0 0 0 0 0 0 18.0 127.0 1.0 0.0 127.0 127.0 7.0 0.0 9.0 5.0 0.0 16.0 73.0 g 0 0 0 0 0 0 0 0 0 0 40.0 10.0 12.0 0.0 4.0 4.0 28.0 127.0 0.0 1.0 56.0 40.0 7.0 t 0 0 0 0 0 0 0 0 0 0 16.0 24.0 127.0 127.0 3.0 2.0 127.0 0.0 127.0 127.0 71.0 77.0 54.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=10; shift=1; ncol=11; -ssCGaGCGss ; Alignment reference a 0 267 279 48 28 996 39 38 36 251 286 c 0 651 629 1647 73 346 51 1667 97 747 581 g 0 678 775 123 1722 412 1762 59 1701 567 772 t 0 274 187 52 47 116 18 106 36 305 231

MA1959.2_shift4 (KLF7)
; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=1/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.50664; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0

MA1513.2_rc_shift4 (KLF15_rc)
; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=2/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.498688; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0

MA0632.3_shift0 (TCFL5)
; oligos_6nt_mkv4_m5 versus MA0632.3 (TCFL5); m=3/9; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.486758; kCrCGCGC--- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0

MA2126.1_shift4 (Zfp961)
; oligos_6nt_mkv4_m5 versus MA2126.1 (Zfp961); m=4/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.483162; ----GGGCGCC ; cor=; Ncor= a 0 0 0 0 18.0 13.0 11.0 8.0 23.0 12.0 9.0 c 0 0 0 0 20.0 22.0 13.0 1219.0 8.0 1367.0 1353.0 g 0 0 0 0 1372.0 1312.0 1278.0 9.0 1372.0 23.0 30.0 t 0 0 0 0 8.0 71.0 116.0 182.0 15.0 16.0 26.0

MA1515.2_rc_shift4 (KLF2_rc)
; oligos_6nt_mkv4_m5 versus MA1515.2_rc (KLF2_rc); m=5/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.479677; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 c 0 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 g 0 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 t 0 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0

MA1713.2_rc_shift3 (ZNF610_rc)
; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=6/9; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.472234; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0

MA0493.3_shift4 (KLF1)
; oligos_6nt_mkv4_m5 versus MA0493.3 (KLF1); m=7/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.468135; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 c 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 g 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 t 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0

MA1650.2_rc_shift4 (ZBTB14_rc)
; oligos_6nt_mkv4_m5 versus MA1650.2_rc (ZBTB14_rc); m=8/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.458023; ----GTGCGCG ; cor=; Ncor= a 0 0 0 0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 c 0 0 0 0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 g 0 0 0 0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 t 0 0 0 0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0

MA1516.2_rc_shift4 (KLF3_rc)
; oligos_6nt_mkv4_m5 versus MA1516.2_rc (KLF3_rc); m=9/9; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.419505; ----GGGCGyG ; cor=; Ncor= a 0 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 c 0 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 g 0 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 t 0 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift1 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -rrAAGAGGAAGwr ; Alignment reference a 0 549 620 1449 1434 90 1528 75 79 1582 1543 114 459 554 c 0 295 280 88 51 75 32 24 29 67 67 102 363 295 g 0 588 565 128 147 1517 110 1583 1582 48 61 1453 423 541 t 0 282 249 49 82 32 44 32 24 17 43 45 469 324
MA0687.2_shift1 (SPIC)				; oligos_7nt_mkv5_m3 versus MA0687.2 (SPIC); m=1/28; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.866283; -aAAWsmGGAAGTa ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0
MA0080.7_shift2 (Spi1)				; oligos_7nt_mkv5_m3 versus MA0080.7 (Spi1); m=2/28; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.796895; --aAAGAGGAAGTG ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0
MA0081.3_rc_shift2 (SPIB_rc)				; oligos_7nt_mkv5_m3 versus MA0081.3_rc (SPIB_rc); m=3/28; ncol2=13; w=0; offset=1; strand=R; shift=2; score=0.755523; --aaaGAGGAAGTG ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0
MA1954.2_shift0 (FOXO1::ELK1)				; oligos_7nt_mkv5_m3 versus MA1954.2 (FOXO1::ELK1); m=4/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.692015; rwmAACAGGAAGt- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0
MA1953.2_shift0 (FOXO1::ELF1)				; oligos_7nt_mkv5_m3 versus MA1953.2 (FOXO1::ELF1); m=5/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.675677; rtmAACAGGAAgt- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0
MA1956.2_shift0 (FOXO1::FLI1)				; oligos_7nt_mkv5_m3 versus MA1956.2 (FOXO1::FLI1); m=6/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667944; GwmAACAGGAAGT- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0
MA1955.2_shift0 (FOXO1::ELK3)				; oligos_7nt_mkv5_m3 versus MA1955.2 (FOXO1::ELK3); m=7/28; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.667526; rwmAACAGGAAGt- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0
MA1942.2_shift2 (ETV2::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1942.2 (ETV2::FOXI1); m=8/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.666571; --aaACAGGAwRy- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; oligos_7nt_mkv5_m3 versus MA1952.2 (FOXJ2::ELF1); m=9/28; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.663708; --aaACmGGAAGw- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0
MA1950.2_shift1 (FLI1::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1950.2 (FLI1::FOXI1); m=10/28; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.644442; -taAACAGGAwr-- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0
MA0474.4_shift4 (Erg)				; oligos_7nt_mkv5_m3 versus MA0474.4 (Erg); m=11/28; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.62764; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0
MA0062.4_rc_shift4 (GABPA_rc)				; oligos_7nt_mkv5_m3 versus MA0062.4_rc (GABPA_rc); m=12/28; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.620258; ----aCAGGAAGTg ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0
MA1935.2_shift2 (ERF::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1935.2 (ERF::FOXI1); m=13/28; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.607185; --aaACmGGAAr-- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0
MA1946.2_shift0 (ETV5::FOXI1)				; oligos_7nt_mkv5_m3 versus MA1946.2 (ETV5::FOXI1); m=14/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.604622; GtMAACMGGAwG-- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0
MA1936.2_shift0 (ERF::FOXO1)				; oligos_7nt_mkv5_m3 versus MA1936.2 (ERF::FOXO1); m=15/28; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.598069; rwmAACAGGAAr-- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; oligos_7nt_mkv5_m3 versus MA0640.3_rc (ELF3_rc); m=16/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.585588; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0
MA0598.4_rc_shift5 (EHF_rc)				; oligos_7nt_mkv5_m3 versus MA0598.4_rc (EHF_rc); m=17/28; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.579413; -----cAGGAAGTg ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0
MA2332.1_shift4 (ZNF175)				; oligos_7nt_mkv5_m3 versus MA2332.1 (ZNF175); m=18/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.573613; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0
MA0761.3_shift4 (ETV1)				; oligos_7nt_mkv5_m3 versus MA0761.3 (ETV1); m=19/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.561644; ----aCAGGAAGT- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0
MA1992.2_shift5 (Ikzf3)				; oligos_7nt_mkv5_m3 versus MA1992.2 (Ikzf3); m=20/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.555769; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0
MA0645.2_shift5 (ETV6)				; oligos_7nt_mkv5_m3 versus MA0645.2 (ETV6); m=21/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.553056; -----sCGGAAGTr ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0
MA0473.4_shift5 (ELF1)				; oligos_7nt_mkv5_m3 versus MA0473.4 (ELF1); m=22/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.549522; -----CAGGAAGTG ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0
MA1708.2_shift5 (ETV7)				; oligos_7nt_mkv5_m3 versus MA1708.2 (ETV7); m=23/28; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.54768; -----scGGAARTr ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0
MA1508.2_shift3 (IKZF1)				; oligos_7nt_mkv5_m3 versus MA1508.2 (IKZF1); m=24/28; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.532871; ---AACAGGAA--- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0
MA0136.4_shift5 (Elf5)				; oligos_7nt_mkv5_m3 versus MA0136.4 (Elf5); m=25/28; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.524553; -----AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0
MA1947.2_shift0 (ETV5::FOXO1)				; oligos_7nt_mkv5_m3 versus MA1947.2 (ETV5::FOXO1); m=26/28; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.482231; rtmAACAGGA---- ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0
MA2326.1_shift6 (IKZF2)				; oligos_7nt_mkv5_m3 versus MA2326.1 (IKZF2); m=27/28; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.460809; ------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0
MA0508.4_rc_shift5 (PRDM1_rc)				; oligos_7nt_mkv5_m3 versus MA0508.4_rc (PRDM1_rc); m=28/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.431081; -----GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m1_shift0 (positions_6nt_m1)				; positions_6nt_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; rrraaGAGGAAGTgrr ; Alignment reference a 511 510 540 950 992 115 1491 58 61 1533 1515 119 156 279 535 527 c 307 325 278 229 123 80 29 23 31 70 57 114 101 211 329 327 g 503 526 580 295 314 1436 110 1557 1555 57 67 1429 122 963 534 479 t 367 327 290 214 259 57 58 50 41 28 49 26 1309 235 290 355
MA0081.3_rc_shift2 (SPIB_rc)				; positions_6nt_m1 versus MA0081.3_rc (SPIB_rc); m=1/33; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.785042; --aaaGAGGAAGTGa- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0
MA0080.7_shift2 (Spi1)				; positions_6nt_m1 versus MA0080.7 (Spi1); m=2/33; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.784896; --aAAGAGGAAGTGg- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0
MA0687.2_shift1 (SPIC)				; positions_6nt_m1 versus MA0687.2 (SPIC); m=3/33; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.676988; -aAAWsmGGAAGTa-- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0
MA1954.2_shift0 (FOXO1::ELK1)				; positions_6nt_m1 versus MA1954.2 (FOXO1::ELK1); m=4/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.634186; rwmAACAGGAAGt--- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0
MA1953.2_shift0 (FOXO1::ELF1)				; positions_6nt_m1 versus MA1953.2 (FOXO1::ELF1); m=5/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.62148; rtmAACAGGAAgt--- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0
MA1956.2_shift0 (FOXO1::FLI1)				; positions_6nt_m1 versus MA1956.2 (FOXO1::FLI1); m=6/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.618765; GwmAACAGGAAGT--- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0
MA1955.2_shift0 (FOXO1::ELK3)				; positions_6nt_m1 versus MA1955.2 (FOXO1::ELK3); m=7/33; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.615542; rwmAACAGGAAGt--- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0
MA0062.4_rc_shift4 (GABPA_rc)				; positions_6nt_m1 versus MA0062.4_rc (GABPA_rc); m=8/33; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.54699; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0
MA1936.2_shift0 (ERF::FOXO1)				; positions_6nt_m1 versus MA1936.2 (ERF::FOXO1); m=9/33; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.54358; rwmAACAGGAAr---- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0 0
MA0474.4_shift4 (Erg)				; positions_6nt_m1 versus MA0474.4 (Erg); m=10/33; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.542065; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; positions_6nt_m1 versus MA1952.2 (FOXJ2::ELF1); m=11/33; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.538405; --aaACmGGAAGw--- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0
MA1946.2_shift0 (ETV5::FOXI1)				; positions_6nt_m1 versus MA1946.2 (ETV5::FOXI1); m=12/33; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.534083; GtMAACMGGAwG---- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0 0 0
MA1942.2_shift2 (ETV2::FOXI1)				; positions_6nt_m1 versus MA1942.2 (ETV2::FOXI1); m=13/33; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.527706; --aaACAGGAwRy--- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; positions_6nt_m1 versus MA0640.3_rc (ELF3_rc); m=14/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.514372; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0
MA0598.4_rc_shift5 (EHF_rc)				; positions_6nt_m1 versus MA0598.4_rc (EHF_rc); m=15/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.512995; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0
MA1950.2_shift1 (FLI1::FOXI1)				; positions_6nt_m1 versus MA1950.2 (FLI1::FOXI1); m=16/33; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.503234; -taAACAGGAwr---- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0 0
MA0473.4_shift5 (ELF1)				; positions_6nt_m1 versus MA0473.4 (ELF1); m=17/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.491834; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0
MA2332.1_shift4 (ZNF175)				; positions_6nt_m1 versus MA2332.1 (ZNF175); m=18/33; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.491785; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0
MA1935.2_shift2 (ERF::FOXI1)				; positions_6nt_m1 versus MA1935.2 (ERF::FOXI1); m=19/33; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.483492; --aaACmGGAAr---- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0
MA1992.2_shift5 (Ikzf3)				; positions_6nt_m1 versus MA1992.2 (Ikzf3); m=20/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.483335; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0
MA0645.2_shift5 (ETV6)				; positions_6nt_m1 versus MA0645.2 (ETV6); m=21/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.482357; -----sCGGAAGTr-- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0
MA0761.3_shift4 (ETV1)				; positions_6nt_m1 versus MA0761.3 (ETV1); m=22/33; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.480225; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0
MA1708.2_shift5 (ETV7)				; positions_6nt_m1 versus MA1708.2 (ETV7); m=23/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.479292; -----scGGAARTr-- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0
MA1652.2_shift7 (ZKSCAN5)				; positions_6nt_m1 versus MA1652.2 (ZKSCAN5); m=24/33; ncol2=9; w=0; offset=7; strand=D; shift=7; score=0.473899; -------GGArGTGAg ; cor=; Ncor= a 0 0 0 0 0 0 0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 c 0 0 0 0 0 0 0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 g 0 0 0 0 0 0 0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 t 0 0 0 0 0 0 0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0
MA0136.4_shift5 (Elf5)				; positions_6nt_m1 versus MA0136.4 (Elf5); m=25/33; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.443879; -----AAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0 0
MA1483.3_shift3 (ELF2)				; positions_6nt_m1 versus MA1483.3 (ELF2); m=26/33; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.44072; ---wmCCGGAAGT--- ; cor=; Ncor= a 0 0 0 84429.0 30422.0 7116.0 13644.0 15.0 21.0 84429.0 84429.0 28882.0 6161.0 0 0 0 c 0 0 0 12629.0 54007.0 84429.0 84429.0 22.0 16.0 51.0 58.0 5077.0 12976.0 0 0 0 g 0 0 0 10017.0 6180.0 14852.0 231.0 84429.0 84429.0 10.0 41.0 84429.0 4604.0 0 0 0 t 0 0 0 39326.0 13118.0 228.0 12.0 18.0 20.0 159.0 1811.0 382.0 84429.0 0 0 0
MA2340.1_shift4 (Zbtb2)				; positions_6nt_m1 versus MA2340.1 (Zbtb2); m=27/33; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.438393; ----ACCGGAAGtG-- ; cor=; Ncor= a 0 0 0 0 776.0 39.0 59.0 21.0 15.0 890.0 823.0 63.0 63.0 102.0 0 0 c 0 0 0 0 90.0 842.0 876.0 35.0 22.0 43.0 62.0 96.0 159.0 139.0 0 0 g 0 0 0 0 108.0 110.0 58.0 940.0 963.0 73.0 94.0 828.0 105.0 697.0 0 0 t 0 0 0 0 45.0 28.0 26.0 23.0 19.0 13.0 40.0 32.0 692.0 81.0 0 0
MA1947.2_shift0 (ETV5::FOXO1)				; positions_6nt_m1 versus MA1947.2 (ETV5::FOXO1); m=28/33; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.438159; rtmAACAGGA------ ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0 0 0
MA1508.2_shift3 (IKZF1)				; positions_6nt_m1 versus MA1508.2 (IKZF1); m=29/33; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.424648; ---AACAGGAA----- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0 0
MA2329.1_rc_shift5 (ZBTB11_rc)				; positions_6nt_m1 versus MA2329.1_rc (ZBTB11_rc); m=30/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.411115; -----CCGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 91.0 319.0 27.0 9.0 2293.0 2176.0 106.0 78.0 153.0 0 0 c 0 0 0 0 0 2030.0 1977.0 25.0 15.0 31.0 101.0 84.0 262.0 188.0 0 0 g 0 0 0 0 0 230.0 74.0 2328.0 2342.0 33.0 39.0 2192.0 120.0 1926.0 0 0 t 0 0 0 0 0 44.0 25.0 15.0 29.0 38.0 79.0 13.0 1935.0 128.0 0 0
MA0750.3_shift5 (ZBTB7A)				; positions_6nt_m1 versus MA0750.3 (ZBTB7A); m=31/33; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.409521; -----CCGGAAGtg-- ; cor=; Ncor= a 0 0 0 0 0 477.0 2490.0 173.0 114.0 13854.0 13719.0 629.0 1141.0 1744.0 0 0 c 0 0 0 0 0 12469.0 11293.0 210.0 163.0 274.0 343.0 711.0 3433.0 2485.0 0 0 g 0 0 0 0 0 1496.0 624.0 14130.0 14239.0 335.0 261.0 13112.0 1623.0 9142.0 0 0 t 0 0 0 0 0 199.0 234.0 128.0 125.0 178.0 318.0 189.0 8444.0 1270.0 0 0
MA1944.2_shift6 (ETV5::DRGX)				; positions_6nt_m1 versus MA1944.2 (ETV5::DRGX); m=32/33; ncol2=12; w=0; offset=6; strand=D; shift=6; score=0.408894; ------mGGAAGyAAT ; cor=; Ncor= a 0 0 0 0 0 0 157.0 4.0 0.0 440.0 329.0 51.0 31.0 440.0 440.0 16.0 c 0 0 0 0 0 0 283.0 3.0 11.0 10.0 29.0 51.0 178.0 18.0 51.0 13.0 g 0 0 0 0 0 0 12.0 440.0 440.0 0.0 15.0 440.0 35.0 141.0 79.0 29.0 t 0 0 0 0 0 0 16.0 2.0 0.0 1.0 111.0 0.0 262.0 3.0 56.0 440.0
MA0076.3_rc_shift5 (ELK4_rc)				; positions_6nt_m1 versus MA0076.3_rc (ELK4_rc); m=33/33; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.406048; -----CCGGAAGyg-- ; cor=; Ncor= a 0 0 0 0 0 83.0 512.0 0.0 0.0 3427.0 3419.0 723.0 210.0 561.0 0 0 c 0 0 0 0 0 2843.0 2915.0 0.0 0.0 0.0 0.0 16.0 1038.0 570.0 0 0 g 0 0 0 0 0 501.0 0.0 3427.0 3427.0 0.0 0.0 2688.0 145.0 1905.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 8.0 0.0 2034.0 391.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m4_shift3 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=3; ncol=13; ---wtATTCCAbr ; Alignment reference a 0 0 0 313 265 1062 12 75 96 10 1029 194 302 c 0 0 0 222 245 9 14 15 962 1002 12 277 239 g 0 0 0 254 242 14 13 10 15 50 44 309 282 t 0 0 0 305 342 9 1055 994 21 32 9 314 271
MA0090.4_shift3 (TEAD1)				; oligos_6nt_mkv4_m4 versus MA0090.4 (TEAD1); m=1/19; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.77922; ---ACATTCCAG- ; cor=; Ncor= a 0 0 0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 0 c 0 0 0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 0 g 0 0 0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 0 t 0 0 0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 0
MA0809.3_shift3 (TEAD4)				; oligos_6nt_mkv4_m4 versus MA0809.3 (TEAD4); m=2/19; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.712676; ---ACATTCCA-- ; cor=; Ncor= a 0 0 0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 0 0 c 0 0 0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 0 0 g 0 0 0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 0 0 t 0 0 0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 0 0
MA0808.1_shift3 (TEAD3)				; oligos_6nt_mkv4_m4 versus MA0808.1 (TEAD3); m=3/19; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.68401; ---rCATTCCw-- ; cor=; Ncor= a 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 c 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 g 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 t 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0
MA1525.3_rc_shift3 (NFATC4_rc)				; oligos_6nt_mkv4_m4 versus MA1525.3_rc (NFATC4_rc); m=4/19; ncol2=9; w=0; offset=0; strand=R; shift=3; score=0.641548; ---wkTTTCCrt- ; cor=; Ncor= a 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 1505.0 0 c 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 2590.0 0 g 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 715.0 0 t 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0 7139.0 0
MA0019.2_rc_shift2 (Ddit3::Cebpa_rc)				; oligos_6nt_mkv4_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=5/19; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.61704; --ggkATTGCAy- ; cor=; Ncor= a 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 c 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 g 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 t 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0
MA1121.2_shift3 (TEAD2)				; oligos_6nt_mkv4_m4 versus MA1121.2 (TEAD2); m=6/19; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.612839; ---ACATTCC--- ; cor=; Ncor= a 0 0 0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 0 0 0 c 0 0 0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 0 0 0 g 0 0 0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 0 0 0 t 0 0 0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 0 0 0
MA0152.3_rc_shift5 (Nfatc2_rc)				; oligos_6nt_mkv4_m4 versus MA0152.3_rc (Nfatc2_rc); m=7/19; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.576823; -----TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0
MA2333.1_shift4 (ZNF35)				; oligos_6nt_mkv4_m4 versus MA2333.1 (ZNF35); m=8/19; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.49461; ----AATTCTA-- ; cor=; Ncor= a 0 0 0 0 13011.0 12763.0 836.0 719.0 1097.0 548.0 13931.0 0 0 c 0 0 0 0 834.0 690.0 655.0 762.0 12495.0 450.0 385.0 0 0 g 0 0 0 0 554.0 693.0 561.0 626.0 898.0 172.0 460.0 0 0 t 0 0 0 0 871.0 1124.0 13218.0 13163.0 780.0 14100.0 494.0 0 0
MA1117.2_shift5 (RELB)				; oligos_6nt_mkv4_m4 versus MA1117.2 (RELB); m=9/19; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.493983; -----ATTCCCC- ; cor=; Ncor= a 0 0 0 0 0 2833.0 210.0 90.0 144.0 92.0 146.0 79.0 0 c 0 0 0 0 0 127.0 107.0 103.0 2928.0 3098.0 3013.0 3035.0 0 g 0 0 0 0 0 157.0 159.0 53.0 40.0 28.0 58.0 107.0 0 t 0 0 0 0 0 173.0 2814.0 3044.0 178.0 72.0 73.0 69.0 0
MA1636.2_rc_shift5 (CEBPG_rc)				; oligos_6nt_mkv4_m4 versus MA1636.2_rc (CEBPG_rc); m=10/19; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.471882; -----ATTGCATC ; cor=; Ncor= a 0 0 0 0 0 29183.0 393.0 319.0 3736.0 390.0 31414.0 2379.0 6359.0 c 0 0 0 0 0 2291.0 304.0 129.0 309.0 36189.0 1101.0 2565.0 29947.0 g 0 0 0 0 0 4761.0 191.0 582.0 28897.0 215.0 2719.0 481.0 351.0 t 0 0 0 0 0 1081.0 36428.0 36286.0 4374.0 522.0 2082.0 31891.0 659.0
MA1624.2_shift6 (Stat5a)				; oligos_6nt_mkv4_m4 versus MA1624.2 (Stat5a); m=11/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.471281; ------TTCCAAG ; cor=; Ncor= a 0 0 0 0 0 0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 c 0 0 0 0 0 0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 g 0 0 0 0 0 0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 t 0 0 0 0 0 0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0
MA0625.3_rc_shift5 (NFATC3_rc)				; oligos_6nt_mkv4_m4 versus MA0625.3_rc (NFATC3_rc); m=12/19; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.471002; -----tTTCCr-- ; cor=; Ncor= a 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 0 0 c 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 0 0 g 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 0 0 t 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0 0 0
MA0624.3_rc_shift5 (Nfatc1_rc)				; oligos_6nt_mkv4_m4 versus MA0624.3_rc (Nfatc1_rc); m=13/19; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.460235; -----TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0
MA1579.2_shift6 (ZBTB26)				; oligos_6nt_mkv4_m4 versus MA1579.2 (ZBTB26); m=14/19; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.450698; ------cTCCAGA ; cor=; Ncor= a 0 0 0 0 0 0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 c 0 0 0 0 0 0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 g 0 0 0 0 0 0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 t 0 0 0 0 0 0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0
MA0101.1_shift0 (REL)				; oligos_6nt_mkv4_m4 versus MA0101.1 (REL); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.446346; sGGrmwTTCC--- ; cor=; Ncor= a 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 c 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 g 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 t 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0
MA0144.3_rc_shift6 (STAT3_rc)				; oligos_6nt_mkv4_m4 versus MA0144.3_rc (STAT3_rc); m=16/19; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.442758; ------TTCCmrG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 402.0 0.0 6472.0 13000.0 1029.0 c 0 0 0 0 0 0 0.0 0.0 18686.0 20046.0 11456.0 0.0 0.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7780.0 19585.0 t 0 0 0 0 0 0 21620.0 21620.0 2532.0 1574.0 3692.0 840.0 1006.0
MA0520.2_shift6 (Stat6)				; oligos_6nt_mkv4_m4 versus MA0520.2 (Stat6); m=17/19; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.442565; ------TTCywsa ; cor=; Ncor= a 0 0 0 0 0 0 0.0 13.0 122.0 70.0 664.0 328.0 1153.0 c 0 0 0 0 0 0 0.0 0.0 1680.0 1204.0 21.0 534.0 3.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 219.0 898.0 416.0 t 0 0 0 0 0 0 1852.0 1839.0 50.0 578.0 948.0 92.0 280.0
MA0519.2_shift6 (Stat5a::Stat5b)				; oligos_6nt_mkv4_m4 versus MA0519.2 (Stat5a::Stat5b); m=18/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.440111; ------TTCCmRG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 0.0 263.0 7044.0 11543.0 0.0 c 0 0 0 0 0 0 0.0 1600.0 16341.0 12795.0 6137.0 0.0 0.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 4140.0 16507.0 t 0 0 0 0 0 0 16507.0 14907.0 166.0 3449.0 3326.0 824.0 0.0
MA0137.4_shift6 (STAT1)				; oligos_6nt_mkv4_m4 versus MA0137.4 (STAT1); m=19/19; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.418538; ------TTCyrGG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 361.0 109.0 1739.0 163.0 29.0 c 0 0 0 0 0 0 52.0 6.0 3262.0 2009.0 0.0 0.0 7.0 g 0 0 0 0 0 0 0.0 110.0 6.0 0.0 1637.0 3466.0 3426.0 t 0 0 0 0 0 0 3577.0 3513.0 0.0 1511.0 253.0 0.0 167.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_6nt_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; rrraaGAGGAAstrr ; Alignment reference a 726 746 769 1364 1524 70 2271 43 70 2311 2268 505 514 681 768 c 444 466 409 353 163 99 35 21 36 35 55 885 404 470 504 g 723 727 828 441 379 2188 73 2296 2266 42 56 816 406 754 705 t 526 480 413 261 353 62 40 59 47 31 40 213 1095 514 442
MA0080.7_shift2 (Spi1)				; positions_6nt_m5 versus MA0080.7 (Spi1); m=1/24; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.775509; --aAAGAGGAAGTGg ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0
MA0081.3_rc_shift2 (SPIB_rc)				; positions_6nt_m5 versus MA0081.3_rc (SPIB_rc); m=2/24; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.755872; --aaaGAGGAAGTGa ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0
MA0687.2_shift1 (SPIC)				; positions_6nt_m5 versus MA0687.2 (SPIC); m=3/24; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.680291; -aAAWsmGGAAGTa- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0
MA1954.2_shift0 (FOXO1::ELK1)				; positions_6nt_m5 versus MA1954.2 (FOXO1::ELK1); m=4/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.647642; rwmAACAGGAAGt-- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0
MA1953.2_shift0 (FOXO1::ELF1)				; positions_6nt_m5 versus MA1953.2 (FOXO1::ELF1); m=5/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.642382; rtmAACAGGAAgt-- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0
MA1956.2_shift0 (FOXO1::FLI1)				; positions_6nt_m5 versus MA1956.2 (FOXO1::FLI1); m=6/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.622036; GwmAACAGGAAGT-- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0
MA1955.2_shift0 (FOXO1::ELK3)				; positions_6nt_m5 versus MA1955.2 (FOXO1::ELK3); m=7/24; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.621715; rwmAACAGGAAGt-- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0
MA1936.2_shift0 (ERF::FOXO1)				; positions_6nt_m5 versus MA1936.2 (ERF::FOXO1); m=8/24; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.56115; rwmAACAGGAAr--- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; positions_6nt_m5 versus MA1952.2 (FOXJ2::ELF1); m=9/24; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.54805; --aaACmGGAAGw-- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0
MA1942.2_shift2 (ETV2::FOXI1)				; positions_6nt_m5 versus MA1942.2 (ETV2::FOXI1); m=10/24; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.541382; --aaACAGGAwRy-- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0
MA1950.2_shift1 (FLI1::FOXI1)				; positions_6nt_m5 versus MA1950.2 (FLI1::FOXI1); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.53197; -taAACAGGAwr--- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0
MA0474.4_shift4 (Erg)				; positions_6nt_m5 versus MA0474.4 (Erg); m=12/24; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.531848; ----aCAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0
MA0062.4_rc_shift4 (GABPA_rc)				; positions_6nt_m5 versus MA0062.4_rc (GABPA_rc); m=13/24; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.521996; ----aCAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0
MA1935.2_shift2 (ERF::FOXI1)				; positions_6nt_m5 versus MA1935.2 (ERF::FOXI1); m=14/24; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.508664; --aaACmGGAAr--- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; positions_6nt_m5 versus MA0640.3_rc (ELF3_rc); m=15/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.491924; -----cAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0
MA0598.4_rc_shift5 (EHF_rc)				; positions_6nt_m5 versus MA0598.4_rc (EHF_rc); m=16/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.488543; -----cAGGAAGTg- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0
MA2332.1_shift4 (ZNF175)				; positions_6nt_m5 versus MA2332.1 (ZNF175); m=17/24; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.477558; ----aCAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0
MA0761.3_shift4 (ETV1)				; positions_6nt_m5 versus MA0761.3 (ETV1); m=18/24; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.471877; ----aCAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0
MA1708.2_shift5 (ETV7)				; positions_6nt_m5 versus MA1708.2 (ETV7); m=19/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.467797; -----scGGAARTr- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0
MA1992.2_shift5 (Ikzf3)				; positions_6nt_m5 versus MA1992.2 (Ikzf3); m=20/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.462194; -----CAGGAAGTG- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0
MA0473.4_shift5 (ELF1)				; positions_6nt_m5 versus MA0473.4 (ELF1); m=21/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.461356; -----CAGGAAGTG- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0
MA0645.2_shift5 (ETV6)				; positions_6nt_m5 versus MA0645.2 (ETV6); m=22/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.457655; -----sCGGAAGTr- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0
MA1508.2_shift3 (IKZF1)				; positions_6nt_m5 versus MA1508.2 (IKZF1); m=23/24; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.452263; ---AACAGGAA---- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0
MA0136.4_shift5 (Elf5)				; positions_6nt_m5 versus MA0136.4 (Elf5); m=24/24; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.431808; -----AAGGAAGT-- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m3_shift0 (positions_7nt_m3)				; positions_7nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=16; rrraaGAGGAAGcrrr ; Alignment reference a 716 696 1026 1432 1507 123 2106 84 83 2110 2130 125 523 864 745 719 c 470 491 362 277 152 113 52 29 37 110 80 102 854 424 433 502 g 681 715 603 403 384 2041 105 2166 2176 75 81 2057 428 607 767 652 t 465 430 341 220 289 55 69 53 36 37 41 48 527 437 387 459
MA0080.7_shift2 (Spi1)				; positions_7nt_m3 versus MA0080.7 (Spi1); m=1/27; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.738219; --aAAGAGGAAGTGg- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0
MA0081.3_rc_shift2 (SPIB_rc)				; positions_7nt_m3 versus MA0081.3_rc (SPIB_rc); m=2/27; ncol2=13; w=0; offset=2; strand=R; shift=2; score=0.706787; --aaaGAGGAAGTGa- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0
MA0687.2_shift1 (SPIC)				; positions_7nt_m3 versus MA0687.2 (SPIC); m=3/27; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.695279; -aAAWsmGGAAGTa-- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0
MA1954.2_shift0 (FOXO1::ELK1)				; positions_7nt_m3 versus MA1954.2 (FOXO1::ELK1); m=4/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.636207; rwmAACAGGAAGt--- ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0
MA1953.2_shift0 (FOXO1::ELF1)				; positions_7nt_m3 versus MA1953.2 (FOXO1::ELF1); m=5/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.622124; rtmAACAGGAAgt--- ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0
MA1955.2_shift0 (FOXO1::ELK3)				; positions_7nt_m3 versus MA1955.2 (FOXO1::ELK3); m=6/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.611285; rwmAACAGGAAGt--- ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0
MA1956.2_shift0 (FOXO1::FLI1)				; positions_7nt_m3 versus MA1956.2 (FOXO1::FLI1); m=7/27; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.604457; GwmAACAGGAAGT--- ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0
MA1936.2_shift0 (ERF::FOXO1)				; positions_7nt_m3 versus MA1936.2 (ERF::FOXO1); m=8/27; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.553818; rwmAACAGGAAr---- ; cor=; Ncor= a 156.0 173.0 207.0 347.0 347.0 11.0 347.0 9.0 15.0 347.0 347.0 120.0 0 0 0 0 c 16.0 38.0 140.0 0.0 12.0 347.0 101.0 11.0 0.0 55.0 10.0 13.0 0 0 0 0 g 191.0 69.0 37.0 68.0 20.0 0.0 26.0 347.0 347.0 0.0 18.0 227.0 0 0 0 0 t 0.0 347.0 19.0 73.0 0.0 0.0 0.0 0.0 24.0 16.0 66.0 0.0 0 0 0 0
MA1946.2_shift0 (ETV5::FOXI1)				; positions_7nt_m3 versus MA1946.2 (ETV5::FOXI1); m=9/27; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.550173; GtMAACMGGAwG---- ; cor=; Ncor= a 94.0 75.0 317.0 431.0 431.0 0.0 431.0 12.0 12.0 431.0 280.0 53.0 0 0 0 0 c 34.0 50.0 113.0 15.0 0.0 431.0 165.0 46.0 2.0 1.0 22.0 6.0 0 0 0 0 g 431.0 105.0 8.0 17.0 77.0 24.0 15.0 431.0 431.0 18.0 17.0 378.0 0 0 0 0 t 0.0 431.0 5.0 2.0 4.0 48.0 0.0 0.0 40.0 15.0 151.0 0.0 0 0 0 0
MA1942.2_shift2 (ETV2::FOXI1)				; positions_7nt_m3 versus MA1942.2 (ETV2::FOXI1); m=10/27; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.540639; --aaACAGGAwRy--- ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; positions_7nt_m3 versus MA1952.2 (FOXJ2::ELF1); m=11/27; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.534143; --aaACmGGAAGw--- ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0
MA1950.2_shift1 (FLI1::FOXI1)				; positions_7nt_m3 versus MA1950.2 (FLI1::FOXI1); m=12/27; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.514754; -taAACAGGAwr---- ; cor=; Ncor= a 0 394.0 1768.0 1768.0 1768.0 28.0 1476.0 45.0 0.0 1768.0 1768.0 764.0 0 0 0 0 c 0 493.0 454.0 183.0 1.0 1768.0 292.0 0.0 0.0 33.0 91.0 63.0 0 0 0 0 g 0 377.0 242.0 165.0 123.0 50.0 43.0 1768.0 1768.0 13.0 39.0 1003.0 0 0 0 0 t 0 1768.0 171.0 192.0 49.0 36.0 0.0 25.0 18.0 19.0 782.0 59.0 0 0 0 0
MA0474.4_shift4 (Erg)				; positions_7nt_m3 versus MA0474.4 (Erg); m=13/27; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.504132; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0
MA0062.4_rc_shift4 (GABPA_rc)				; positions_7nt_m3 versus MA0062.4_rc (GABPA_rc); m=14/27; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.498176; ----aCAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0
MA1935.2_shift2 (ERF::FOXI1)				; positions_7nt_m3 versus MA1935.2 (ERF::FOXI1); m=15/27; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.490974; --aaACmGGAAr---- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; positions_7nt_m3 versus MA0640.3_rc (ELF3_rc); m=16/27; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.468784; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0
MA2332.1_shift4 (ZNF175)				; positions_7nt_m3 versus MA2332.1 (ZNF175); m=17/27; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.464969; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0
MA0598.4_rc_shift5 (EHF_rc)				; positions_7nt_m3 versus MA0598.4_rc (EHF_rc); m=18/27; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.463436; -----cAGGAAGTg-- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0
MA0761.3_shift4 (ETV1)				; positions_7nt_m3 versus MA0761.3 (ETV1); m=19/27; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.455656; ----aCAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0
MA1947.2_shift0 (ETV5::FOXO1)				; positions_7nt_m3 versus MA1947.2 (ETV5::FOXO1); m=20/27; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.451432; rtmAACAGGA------ ; cor=; Ncor= a 77.0 97.0 151.0 237.0 237.0 5.0 237.0 18.0 0.0 237.0 0 0 0 0 0 0 c 11.0 10.0 86.0 32.0 0.0 237.0 37.0 7.0 0.0 5.0 0 0 0 0 0 0 g 160.0 90.0 9.0 1.0 44.0 0.0 7.0 237.0 237.0 20.0 0 0 0 0 0 0 t 7.0 237.0 4.0 3.0 8.0 17.0 2.0 0.0 6.0 31.0 0 0 0 0 0 0
MA1992.2_shift5 (Ikzf3)				; positions_7nt_m3 versus MA1992.2 (Ikzf3); m=21/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.445349; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0
MA0645.2_shift5 (ETV6)				; positions_7nt_m3 versus MA0645.2 (ETV6); m=22/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.444047; -----sCGGAAGTr-- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0
MA0473.4_shift5 (ELF1)				; positions_7nt_m3 versus MA0473.4 (ELF1); m=23/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.43832; -----CAGGAAGTG-- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0
MA1708.2_shift5 (ETV7)				; positions_7nt_m3 versus MA1708.2 (ETV7); m=24/27; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.436695; -----scGGAARTr-- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0
MA1508.2_shift3 (IKZF1)				; positions_7nt_m3 versus MA1508.2 (IKZF1); m=25/27; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.427379; ---AACAGGAA----- ; cor=; Ncor= a 0 0 0 8122.0 9137.0 673.0 10194.0 125.0 418.0 10323.0 10254.0 0 0 0 0 0 c 0 0 0 1158.0 473.0 8678.0 212.0 106.0 178.0 247.0 114.0 0 0 0 0 0 g 0 0 0 1007.0 956.0 1272.0 252.0 10569.0 10185.0 297.0 261.0 0 0 0 0 0 t 0 0 0 631.0 352.0 295.0 260.0 118.0 137.0 51.0 289.0 0 0 0 0 0
MA0136.4_shift5 (Elf5)				; positions_7nt_m3 versus MA0136.4 (Elf5); m=26/27; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.423128; -----AAGGAAGT--- ; cor=; Ncor= a 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 0 0 c 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 0 0 g 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 0 0 t 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0 0 0
MA1944.2_shift6 (ETV5::DRGX)				; positions_7nt_m3 versus MA1944.2 (ETV5::DRGX); m=27/27; ncol2=12; w=0; offset=6; strand=D; shift=6; score=0.421731; ------mGGAAGyAAT ; cor=; Ncor= a 0 0 0 0 0 0 157.0 4.0 0.0 440.0 329.0 51.0 31.0 440.0 440.0 16.0 c 0 0 0 0 0 0 283.0 3.0 11.0 10.0 29.0 51.0 178.0 18.0 51.0 13.0 g 0 0 0 0 0 0 12.0 440.0 440.0 0.0 15.0 440.0 35.0 141.0 79.0 29.0 t 0 0 0 0 0 0 16.0 2.0 0.0 1.0 111.0 0.0 262.0 3.0 56.0 440.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m2_shift3 (oligos_7nt_mkv5_m2)				; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=3; ncol=14; ---ssCGCCCTCss ; Alignment reference a 0 0 0 330 322 34 68 53 60 60 137 36 327 318 c 0 0 0 1052 845 2229 67 1998 2025 2109 280 2083 910 889 g 0 0 0 624 823 64 2165 211 197 81 302 175 663 699 t 0 0 0 365 381 44 71 109 89 121 1652 77 471 465
MA0162.5_shift4 (EGR1)				; oligos_7nt_mkv5_m2 versus MA0162.5 (EGR1); m=1/34; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.725193; ----mCGCCCACgC ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0
MA0733.2_shift4 (EGR4)				; oligos_7nt_mkv5_m2 versus MA0733.2 (EGR4); m=2/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.656543; ----mCGCCCACGC ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0
MA0732.2_shift4 (EGR3)				; oligos_7nt_mkv5_m2 versus MA0732.2 (EGR3); m=3/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.64107; ----mCGCCCMCGC ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0
MA0747.2_shift2 (SP8)				; oligos_7nt_mkv5_m2 versus MA0747.2 (SP8); m=4/34; ncol2=11; w=-1; offset=-1; strand=D; shift=2; score=0.625098; --mCACgCCCmCy- ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0
MA1564.2_shift2 (SP9)				; oligos_7nt_mkv5_m2 versus MA1564.2 (SP9); m=5/34; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.62308; --cCmCGCCCmc-- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0
MA0472.2_shift4 (EGR2)				; oligos_7nt_mkv5_m2 versus MA0472.2 (EGR2); m=6/34; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.612032; ----mCGCCCACGC ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0
MA1512.2_shift2 (KLF11)				; oligos_7nt_mkv5_m2 versus MA1512.2 (KLF11); m=7/34; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.594294; --cCACGCCCmC-- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_7nt_mkv5_m2 versus MA0742.2_rc (KLF12_rc); m=8/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.561334; --CCCCGCCCC--- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0
MA0746.3_shift1 (SP3)				; oligos_7nt_mkv5_m2 versus MA0746.3 (SP3); m=9/34; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.553067; -rCCACGCCCmC-- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_7nt_mkv5_m2 versus MA0685.2_rc (SP4_rc); m=10/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550533; --CyCCKCCCc--- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_7nt_mkv5_m2 versus MA1959.2_rc (KLF7_rc); m=11/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.548832; --CcMCGCCC---- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_7nt_mkv5_m2 versus MA0740.2_rc (KLF14_rc); m=12/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.547692; --CCMCGCCCm--- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_7nt_mkv5_m2 versus MA1511.2_rc (KLF10_rc); m=13/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.546013; --CCMCGCCCC--- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_7nt_mkv5_m2 versus MA0516.3_rc (SP2_rc); m=14/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.542138; --cCCCGCCCC--- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0
MA1517.2_shift2 (KLF6)				; oligos_7nt_mkv5_m2 versus MA1517.2 (KLF6); m=15/34; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.538692; --cCACRCCCm--- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0
MA2099.1_shift5 (ZNF770)				; oligos_7nt_mkv5_m2 versus MA2099.1 (ZNF770); m=16/34; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.538303; -----CrGCCTCm- ; cor=; Ncor= a 0 0 0 0 0 292.0 3968.0 179.0 101.0 37.0 87.0 35.0 9257.0 0 c 0 0 0 0 0 12613.0 857.0 79.0 13393.0 14096.0 140.0 14154.0 3865.0 0 g 0 0 0 0 0 374.0 9119.0 13947.0 681.0 133.0 215.0 86.0 485.0 0 t 0 0 0 0 0 1052.0 387.0 126.0 156.0 65.0 13889.0 56.0 724.0 0
MA0741.1_shift1 (KLF16)				; oligos_7nt_mkv5_m2 versus MA0741.1 (KLF16); m=17/34; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.537271; -gmCMCgCCCMC-- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA1102.3_rc_shift6 (CTCFL_rc)				; oligos_7nt_mkv5_m2 versus MA1102.3_rc (CTCFL_rc); m=18/34; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.533018; ------GCCCCCTG ; cor=; Ncor= a 0 0 0 0 0 0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 c 0 0 0 0 0 0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 g 0 0 0 0 0 0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 t 0 0 0 0 0 0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0
MA1513.2_shift2 (KLF15)				; oligos_7nt_mkv5_m2 versus MA1513.2 (KLF15); m=19/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.531566; --cCCCGCCC---- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0
MA1522.2_shift6 (MAZ)				; oligos_7nt_mkv5_m2 versus MA1522.2 (MAZ); m=20/34; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.521494; ------CCCCTCCc ; cor=; Ncor= a 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 c 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 g 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 t 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_7nt_mkv5_m2 versus MA0079.5_rc (SP1_rc); m=21/34; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.519388; --CyCCKCCCC--- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_7nt_mkv5_m2 versus MA1515.2 (KLF2); m=22/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.517645; --CCmCrCCC---- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_7nt_mkv5_m2 versus MA0493.3_rc (KLF1_rc); m=23/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.512949; --CCmCrCCC---- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_7nt_mkv5_m2 versus MA1961.2_rc (PATZ1_rc); m=24/34; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.508772; -sCCCCkCCCCs-- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0
MA0599.1_shift1 (KLF5)				; oligos_7nt_mkv5_m2 versus MA0599.1 (KLF5); m=25/34; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.498222; -gCCMCrCCCh--- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_7nt_mkv5_m2 versus MA2126.1_rc (Zfp961_rc); m=26/34; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.492025; --TGGCGCCC---- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0
MA1965.2_shift8 (SP5)				; oligos_7nt_mkv5_m2 versus MA1965.2 (SP5); m=27/34; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.481099; --------CCTCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 c 0 0 0 0 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 g 0 0 0 0 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 t 0 0 0 0 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0
MA0748.3_rc_shift4 (YY2_rc)				; oligos_7nt_mkv5_m2 versus MA0748.3_rc (YY2_rc); m=28/34; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.471361; ----CCGCCAT--- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0 0 0
MA0139.2_rc_shift4 (CTCF_rc)				; oligos_7nt_mkv5_m2 versus MA0139.2_rc (CTCF_rc); m=29/34; ncol2=15; w=0; offset=1; strand=R; shift=4; score=0.462427; ----syGCCmyCTr ; cor=; Ncor= a 0 0 0 0 37.0 17.0 67.0 71.0 8.0 341.0 9.0 3.0 18.0 324.0 c 0 0 0 0 307.0 507.0 5.0 775.0 890.0 504.0 566.0 903.0 32.0 48.0 g 0 0 0 0 482.0 13.0 733.0 8.0 0.0 12.0 3.0 0.0 11.0 433.0 t 0 0 0 0 82.0 372.0 104.0 56.0 12.0 54.0 333.0 5.0 851.0 107.0
MA1516.2_shift0 (KLF3)				; oligos_7nt_mkv5_m2 versus MA1516.2 (KLF3); m=30/34; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.451145; grCCrCGCCC---- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0
MA1653.2_shift6 (ZNF148)				; oligos_7nt_mkv5_m2 versus MA1653.2 (ZNF148); m=31/34; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.438796; ------CCCCTCCC ; cor=; Ncor= a 0 0 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 c 0 0 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 g 0 0 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 t 0 0 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0
MA0039.5_shift2 (KLF4)				; oligos_7nt_mkv5_m2 versus MA0039.5 (KLF4); m=32/34; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.425763; --CCCCACCC---- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0 0
MA1727.2_rc_shift2 (ZNF417_rc)				; oligos_7nt_mkv5_m2 versus MA1727.2_rc (ZNF417_rc); m=33/34; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.415565; --TGGCGCC----- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0 0
MA1578.2_shift7 (VEZF1)				; oligos_7nt_mkv5_m2 versus MA1578.2 (VEZF1); m=34/34; ncol2=6; w=0; offset=4; strand=D; shift=7; score=0.404404; -------CCCCCC- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=18; shift=1; ncol=19; -rrarGAGGAAGTgarrgd ; Alignment reference a 0 471 538 818 481 120 1420 66 59 1468 1432 107 152 238 773 628 569 392 428 c 0 340 302 216 130 77 40 17 18 69 65 117 85 176 256 290 324 349 370 g 0 520 492 341 727 1370 96 1503 1514 57 88 1370 135 1036 401 422 420 532 418 t 0 296 295 252 289 60 71 41 36 33 42 33 1255 177 197 287 314 354 411
MA0081.3_rc_shift2 (SPIB_rc)				; positions_7nt_m5 versus MA0081.3_rc (SPIB_rc); m=1/21; ncol2=13; w=0; offset=1; strand=R; shift=2; score=0.69195; --aaaGAGGAAGTGa---- ; cor=; Ncor= a 0 0 14333.0 16580.0 17264.0 3481.0 19719.0 1034.0 426.0 26297.0 26087.0 1445.0 1323.0 859.0 15129.0 0 0 0 0 c 0 0 2409.0 2087.0 781.0 2316.0 1829.0 129.0 153.0 243.0 157.0 2516.0 669.0 1721.0 3193.0 0 0 0 0 g 0 0 6029.0 5425.0 3922.0 20113.0 4517.0 25492.0 26145.0 200.0 236.0 22730.0 619.0 23971.0 6429.0 0 0 0 0 t 0 0 4159.0 2838.0 4963.0 1020.0 865.0 275.0 206.0 190.0 450.0 239.0 24319.0 379.0 2179.0 0 0 0 0
MA0080.7_shift2 (Spi1)				; positions_7nt_m5 versus MA0080.7 (Spi1); m=2/21; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.670401; --aAAGAGGAAGTGg---- ; cor=; Ncor= a 0 0 66531.0 82280.0 81461.0 8636.0 89952.0 4077.0 2028.0 102012.0 99529.0 7616.0 16997.0 9972.0 23194.0 0 0 0 0 c 0 0 6863.0 5758.0 2330.0 12201.0 2594.0 550.0 831.0 1095.0 958.0 7067.0 3716.0 6075.0 11577.0 0 0 0 0 g 0 0 22807.0 10614.0 10220.0 79986.0 9636.0 99360.0 101383.0 1063.0 1822.0 89140.0 5128.0 83385.0 57669.0 0 0 0 0 t 0 0 8997.0 6546.0 11187.0 4375.0 3016.0 1211.0 956.0 1028.0 2889.0 1375.0 79357.0 5766.0 12758.0 0 0 0 0
MA0687.2_shift1 (SPIC)				; positions_7nt_m5 versus MA0687.2 (SPIC); m=3/21; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.567228; -aAAWsmGGAAGTa----- ; cor=; Ncor= a 0 162.0 186.0 194.0 171.0 30.0 88.0 0.0 13.0 204.0 192.0 13.0 45.0 115.0 0 0 0 0 0 c 0 31.0 25.0 9.0 0.0 75.0 59.0 8.0 0.0 7.0 31.0 0.0 24.0 36.0 0 0 0 0 0 g 0 70.0 13.0 0.0 0.0 181.0 48.0 217.0 232.0 0.0 13.0 231.0 17.0 9.0 0 0 0 0 0 t 0 40.0 18.0 4.0 75.0 13.0 0.0 3.0 26.0 16.0 8.0 0.0 194.0 19.0 0 0 0 0 0
MA0062.4_rc_shift4 (GABPA_rc)				; positions_7nt_m5 versus MA0062.4_rc (GABPA_rc); m=4/21; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.475928; ----aCAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 40409.0 5012.0 57654.0 859.0 1558.0 61754.0 59186.0 6717.0 4358.0 9453.0 0 0 0 0 0 c 0 0 0 0 7720.0 51920.0 4561.0 520.0 1150.0 1633.0 965.0 2169.0 4873.0 6989.0 0 0 0 0 0 g 0 0 0 0 12006.0 6328.0 1542.0 63107.0 61373.0 1230.0 1443.0 55664.0 3988.0 41398.0 0 0 0 0 0 t 0 0 0 0 5344.0 2219.0 1722.0 993.0 1398.0 862.0 3885.0 929.0 52260.0 7639.0 0 0 0 0 0
MA0474.4_shift4 (Erg)				; positions_7nt_m5 versus MA0474.4 (Erg); m=5/21; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.469358; ----aCAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 19688.0 1837.0 26773.0 170.0 297.0 29248.0 27881.0 4894.0 2318.0 4846.0 0 0 0 0 0 c 0 0 0 0 2742.0 24759.0 2559.0 133.0 265.0 355.0 370.0 1173.0 3310.0 3938.0 0 0 0 0 0 g 0 0 0 0 4936.0 2732.0 463.0 29562.0 29221.0 274.0 277.0 23600.0 2870.0 18018.0 0 0 0 0 0 t 0 0 0 0 2695.0 733.0 266.0 196.0 278.0 184.0 1533.0 394.0 21563.0 3259.0 0 0 0 0 0
MA1954.2_shift0 (FOXO1::ELK1)				; positions_7nt_m5 versus MA1954.2 (FOXO1::ELK1); m=6/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.464024; rwmAACAGGAAGt------ ; cor=; Ncor= a 722.0 566.0 1010.0 1357.0 1357.0 18.0 1357.0 2.0 9.0 1357.0 1357.0 248.0 195.0 0 0 0 0 0 0 c 233.0 82.0 1094.0 36.0 21.0 1357.0 228.0 4.0 7.0 33.0 35.0 103.0 377.0 0 0 0 0 0 0 g 636.0 292.0 31.0 57.0 64.0 23.0 15.0 1357.0 1357.0 16.0 22.0 1357.0 234.0 0 0 0 0 0 0 t 52.0 791.0 263.0 53.0 16.0 55.0 5.0 6.0 13.0 7.0 188.0 19.0 980.0 0 0 0 0 0 0
MA1956.2_shift0 (FOXO1::FLI1)				; positions_7nt_m5 versus MA1956.2 (FOXO1::FLI1); m=7/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.457811; GwmAACAGGAAGT------ ; cor=; Ncor= a 39.0 100.0 142.0 208.0 208.0 0.0 208.0 12.0 8.0 208.0 208.0 47.0 5.0 0 0 0 0 0 0 c 16.0 57.0 65.0 5.0 0.0 208.0 10.0 4.0 0.0 0.0 4.0 12.0 44.0 0 0 0 0 0 0 g 169.0 15.0 0.0 0.0 0.0 0.0 1.0 208.0 208.0 0.0 0.0 208.0 16.0 0 0 0 0 0 0 t 0.0 208.0 4.0 0.0 6.0 3.0 0.0 0.0 1.0 1.0 34.0 0.0 208.0 0 0 0 0 0 0
MA0640.3_rc_shift5 (ELF3_rc)				; positions_7nt_m5 versus MA0640.3_rc (ELF3_rc); m=8/21; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.45736; -----cAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 0 8528.0 44422.0 475.0 793.0 46173.0 45195.0 4633.0 3204.0 9951.0 0 0 0 0 0 c 0 0 0 0 0 28319.0 1989.0 473.0 566.0 954.0 768.0 1365.0 2615.0 4122.0 0 0 0 0 0 g 0 0 0 0 0 9278.0 1315.0 47107.0 46481.0 943.0 1368.0 41950.0 2040.0 27973.0 0 0 0 0 0 t 0 0 0 0 0 2377.0 776.0 447.0 662.0 432.0 1171.0 554.0 40643.0 6456.0 0 0 0 0 0
MA0598.4_rc_shift5 (EHF_rc)				; positions_7nt_m5 versus MA0598.4_rc (EHF_rc); m=9/21; ncol2=9; w=0; offset=4; strand=R; shift=5; score=0.456184; -----cAGGAAGTg----- ; cor=; Ncor= a 0 0 0 0 0 2629.0 12794.0 112.0 201.0 14865.0 14622.0 1706.0 723.0 2827.0 0 0 0 0 0 c 0 0 0 0 0 9061.0 1538.0 101.0 139.0 199.0 152.0 377.0 775.0 1540.0 0 0 0 0 0 g 0 0 0 0 0 2983.0 608.0 14997.0 14833.0 164.0 167.0 13116.0 456.0 8887.0 0 0 0 0 0 t 0 0 0 0 0 695.0 428.0 158.0 195.0 140.0 427.0 169.0 13414.0 2114.0 0 0 0 0 0
MA1953.2_shift0 (FOXO1::ELF1)				; positions_7nt_m5 versus MA1953.2 (FOXO1::ELF1); m=10/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.455004; rtmAACAGGAAgt------ ; cor=; Ncor= a 102.0 74.0 159.0 248.0 248.0 0.0 248.0 9.0 4.0 248.0 248.0 87.0 65.0 0 0 0 0 0 0 c 37.0 36.0 89.0 26.0 4.0 248.0 15.0 9.0 11.0 22.0 0.0 32.0 88.0 0 0 0 0 0 0 g 145.0 41.0 2.0 7.0 21.0 0.0 7.0 248.0 248.0 4.0 8.0 248.0 39.0 0 0 0 0 0 0 t 10.0 174.0 24.0 12.0 4.0 42.0 0.0 6.0 3.0 3.0 71.0 6.0 248.0 0 0 0 0 0 0
MA1952.2_shift2 (FOXJ2::ELF1)				; positions_7nt_m5 versus MA1952.2 (FOXJ2::ELF1); m=11/21; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.454286; --aaACmGGAAGw------ ; cor=; Ncor= a 0 0 1514.0 1514.0 1514.0 95.0 1514.0 217.0 23.0 1514.0 1514.0 516.0 390.0 0 0 0 0 0 0 c 0 0 406.0 327.0 197.0 1514.0 1028.0 119.0 0.0 0.0 0.0 124.0 223.0 0 0 0 0 0 0 g 0 0 100.0 116.0 157.0 84.0 48.0 1514.0 1514.0 4.0 0.0 1514.0 17.0 0 0 0 0 0 0 t 0 0 288.0 366.0 33.0 156.0 35.0 22.0 0.0 9.0 86.0 47.0 884.0 0 0 0 0 0 0
MA1955.2_shift0 (FOXO1::ELK3)				; positions_7nt_m5 versus MA1955.2 (FOXO1::ELK3); m=12/21; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.450207; rwmAACAGGAAGt------ ; cor=; Ncor= a 54.0 77.0 71.0 127.0 127.0 0.0 127.0 2.0 3.0 127.0 127.0 24.0 16.0 0 0 0 0 0 0 c 7.0 40.0 56.0 1.0 0.0 127.0 28.0 4.0 4.0 0.0 12.0 10.0 40.0 0 0 0 0 0 0 g 73.0 16.0 0.0 5.0 9.0 0.0 7.0 127.0 127.0 0.0 1.0 127.0 18.0 0 0 0 0 0 0 t 10.0 127.0 0.0 2.0 0.0 4.0 1.0 0.0 4.0 8.0 12.0 5.0 127.0 0 0 0 0 0 0
MA1942.2_shift2 (ETV2::FOXI1)				; positions_7nt_m5 versus MA1942.2 (ETV2::FOXI1); m=13/21; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.442444; --aaACAGGAwRy------ ; cor=; Ncor= a 0 0 1322.0 1747.0 1747.0 38.0 1359.0 14.0 33.0 1747.0 1747.0 469.0 247.0 0 0 0 0 0 0 c 0 0 426.0 323.0 55.0 1747.0 388.0 30.0 0.0 35.0 84.0 20.0 742.0 0 0 0 0 0 0 g 0 0 175.0 391.0 183.0 84.0 14.0 1747.0 1747.0 0.0 18.0 1278.0 163.0 0 0 0 0 0 0 t 0 0 150.0 259.0 37.0 33.0 0.0 19.0 105.0 14.0 755.0 3.0 1005.0 0 0 0 0 0 0
MA0473.4_shift5 (ELF1)				; positions_7nt_m5 versus MA0473.4 (ELF1); m=14/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.438835; -----CAGGAAGTG----- ; cor=; Ncor= a 0 0 0 0 0 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 0 0 0 c 0 0 0 0 0 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 0 0 0 g 0 0 0 0 0 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 0 0 0 t 0 0 0 0 0 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0 0 0 0
MA1652.2_shift7 (ZKSCAN5)				; positions_7nt_m5 versus MA1652.2 (ZKSCAN5); m=15/21; ncol2=9; w=0; offset=6; strand=D; shift=7; score=0.438286; -------GGArGTGAg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 0 0 0 c 0 0 0 0 0 0 0 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 0 0 0 g 0 0 0 0 0 0 0 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 0 0 0 t 0 0 0 0 0 0 0 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 0 0 0
MA1992.2_shift5 (Ikzf3)				; positions_7nt_m5 versus MA1992.2 (Ikzf3); m=16/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.431004; -----CAGGAAGTG----- ; cor=; Ncor= a 0 0 0 0 0 51.0 1054.0 4.0 18.0 1130.0 1058.0 102.0 115.0 125.0 0 0 0 0 0 c 0 0 0 0 0 998.0 62.0 7.0 16.0 25.0 12.0 45.0 147.0 141.0 0 0 0 0 0 g 0 0 0 0 0 103.0 48.0 1166.0 1141.0 22.0 20.0 1011.0 111.0 808.0 0 0 0 0 0 t 0 0 0 0 0 31.0 19.0 6.0 8.0 6.0 93.0 25.0 810.0 109.0 0 0 0 0 0
MA0645.2_shift5 (ETV6)				; positions_7nt_m5 versus MA0645.2 (ETV6); m=17/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.428703; -----sCGGAAGTr----- ; cor=; Ncor= a 0 0 0 0 0 342.0 1476.0 7.0 21.0 6687.0 6687.0 768.0 184.0 2049.0 0 0 0 0 0 c 0 0 0 0 0 2394.0 6379.0 0.0 0.0 0.0 13.0 52.0 834.0 342.0 0 0 0 0 0 g 0 0 0 0 0 4292.0 397.0 6687.0 6687.0 7.0 32.0 6687.0 233.0 3205.0 0 0 0 0 0 t 0 0 0 0 0 441.0 308.0 13.0 22.0 0.0 41.0 0.0 6687.0 1091.0 0 0 0 0 0
MA1708.2_shift5 (ETV7)				; positions_7nt_m5 versus MA1708.2 (ETV7); m=18/21; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.427136; -----scGGAARTr----- ; cor=; Ncor= a 0 0 0 0 0 2249.0 1878.0 0.0 2.0 6836.0 6836.0 3070.0 390.0 3564.0 0 0 0 0 0 c 0 0 0 0 0 4187.0 6836.0 4.0 4.0 0.0 58.0 89.0 665.0 721.0 0 0 0 0 0 g 0 0 0 0 0 6836.0 919.0 6836.0 6836.0 0.0 3.0 6836.0 962.0 6836.0 0 0 0 0 0 t 0 0 0 0 0 800.0 923.0 0.0 20.0 35.0 118.0 0.0 6836.0 1162.0 0 0 0 0 0
MA2332.1_shift4 (ZNF175)				; positions_7nt_m5 versus MA2332.1 (ZNF175); m=19/21; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.425215; ----aCAGGAAGT------ ; cor=; Ncor= a 0 0 0 0 923.0 114.0 1333.0 26.0 44.0 1399.0 1343.0 99.0 126.0 0 0 0 0 0 0 c 0 0 0 0 177.0 1138.0 66.0 26.0 12.0 32.0 32.0 44.0 144.0 0 0 0 0 0 0 g 0 0 0 0 207.0 142.0 42.0 1397.0 1373.0 21.0 28.0 1309.0 102.0 0 0 0 0 0 0 t 0 0 0 0 169.0 82.0 35.0 27.0 47.0 24.0 73.0 24.0 1104.0 0 0 0 0 0 0
MA0761.3_shift4 (ETV1)				; positions_7nt_m5 versus MA0761.3 (ETV1); m=20/21; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.416239; ----aCAGGAAGT------ ; cor=; Ncor= a 0 0 0 0 22801.0 1848.0 33305.0 231.0 378.0 36130.0 33368.0 4235.0 3343.0 0 0 0 0 0 0 c 0 0 0 0 4339.0 32139.0 3064.0 275.0 271.0 471.0 486.0 1307.0 3889.0 0 0 0 0 0 0 g 0 0 0 0 6015.0 2389.0 573.0 36483.0 36121.0 375.0 412.0 31256.0 3146.0 0 0 0 0 0 0 t 0 0 0 0 4184.0 963.0 397.0 350.0 569.0 363.0 3073.0 541.0 26961.0 0 0 0 0 0 0
MA1935.2_shift2 (ERF::FOXI1)				; positions_7nt_m5 versus MA1935.2 (ERF::FOXI1); m=21/21; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.409991; --aaACmGGAAr------- ; cor=; Ncor= a 0 0 719.0 719.0 719.0 87.0 403.0 35.0 0.0 719.0 719.0 287.0 0 0 0 0 0 0 0 c 0 0 287.0 161.0 50.0 719.0 316.0 28.0 33.0 1.0 89.0 87.0 0 0 0 0 0 0 0 g 0 0 125.0 150.0 175.0 112.0 27.0 719.0 719.0 6.0 5.0 433.0 0 0 0 0 0 0 0 t 0 0 178.0 224.0 12.0 52.0 0.0 0.0 20.0 10.0 236.0 16.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_7nt_m1; m=0 (reference); ncol1=19; shift=0; ncol=19; wyyytcACTTCCTCtttyy ; Alignment reference a 435 366 327 290 205 212 1246 32 47 33 50 49 62 67 238 172 257 300 369 c 386 499 408 405 395 954 125 1334 56 59 1451 1485 110 1341 277 252 398 506 466 g 356 334 289 268 226 180 73 118 39 68 34 24 28 73 89 199 226 311 274 t 440 418 593 654 791 271 173 133 1475 1457 82 59 1417 136 1013 994 736 500 508
MA0081.3_shift4 (SPIB)				; positions_7nt_m1 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=4; strand=D; shift=4; score=0.670875; ----tCACTTCCTCttt-- ; cor=; Ncor= a 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 c 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 g 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 t 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0
MA0080.7_rc_shift4 (Spi1_rc)				; positions_7nt_m1 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.663969; ----cCACTTCCTCTTt-- ; cor=; Ncor= a 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 c 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 g 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 t 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0
MA0687.2_rc_shift5 (SPIC_rc)				; positions_7nt_m1 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=5; strand=R; shift=5; score=0.585144; -----tACTTCCksWTTt- ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0
MA1954.2_rc_shift6 (FOXO1::ELK1_rc)				; positions_7nt_m1 versus MA1954.2_rc (FOXO1::ELK1_rc); m=4/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.543642; ------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 52.0 c 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 636.0 g 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 233.0 t 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0 722.0
MA1953.2_rc_shift6 (FOXO1::ELF1_rc)				; positions_7nt_m1 versus MA1953.2_rc (FOXO1::ELF1_rc); m=5/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.536822; ------acTTCCTGTTkay ; cor=; Ncor= a 0 0 0 0 0 0 248.0 6.0 71.0 3.0 3.0 6.0 0.0 42.0 4.0 12.0 24.0 174.0 10.0 c 0 0 0 0 0 0 39.0 248.0 8.0 4.0 248.0 248.0 7.0 0.0 21.0 7.0 2.0 41.0 145.0 g 0 0 0 0 0 0 88.0 32.0 0.0 22.0 11.0 9.0 15.0 248.0 4.0 26.0 89.0 36.0 37.0 t 0 0 0 0 0 0 65.0 87.0 248.0 248.0 4.0 9.0 248.0 0.0 248.0 248.0 159.0 74.0 102.0
MA1956.2_rc_shift6 (FOXO1::FLI1_rc)				; positions_7nt_m1 versus MA1956.2_rc (FOXO1::FLI1_rc); m=6/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.534637; ------ACTTCCTGTTkwC ; cor=; Ncor= a 0 0 0 0 0 0 208.0 0.0 34.0 1.0 1.0 0.0 0.0 3.0 6.0 0.0 4.0 208.0 0.0 c 0 0 0 0 0 0 16.0 208.0 0.0 0.0 208.0 208.0 1.0 0.0 0.0 0.0 0.0 15.0 169.0 g 0 0 0 0 0 0 44.0 12.0 4.0 0.0 0.0 4.0 10.0 208.0 0.0 5.0 65.0 57.0 16.0 t 0 0 0 0 0 0 5.0 47.0 208.0 208.0 8.0 12.0 208.0 0.0 208.0 208.0 142.0 100.0 39.0
MA1955.2_rc_shift6 (FOXO1::ELK3_rc)				; positions_7nt_m1 versus MA1955.2_rc (FOXO1::ELK3_rc); m=7/24; ncol2=13; w=0; offset=6; strand=R; shift=6; score=0.531316; ------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 127.0 5.0 12.0 8.0 4.0 0.0 1.0 4.0 0.0 2.0 0.0 127.0 10.0 c 0 0 0 0 0 0 18.0 127.0 1.0 0.0 127.0 127.0 7.0 0.0 9.0 5.0 0.0 16.0 73.0 g 0 0 0 0 0 0 40.0 10.0 12.0 0.0 4.0 4.0 28.0 127.0 0.0 1.0 56.0 40.0 7.0 t 0 0 0 0 0 0 16.0 24.0 127.0 127.0 3.0 2.0 127.0 0.0 127.0 127.0 71.0 77.0 54.0
MA1936.2_rc_shift7 (ERF::FOXO1_rc)				; positions_7nt_m1 versus MA1936.2_rc (ERF::FOXO1_rc); m=8/24; ncol2=12; w=0; offset=7; strand=R; shift=7; score=0.468346; -------yTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 66.0 16.0 24.0 0.0 0.0 0.0 0.0 73.0 19.0 347.0 0.0 c 0 0 0 0 0 0 0 227.0 18.0 0.0 347.0 347.0 26.0 0.0 20.0 68.0 37.0 69.0 191.0 g 0 0 0 0 0 0 0 13.0 10.0 55.0 0.0 11.0 101.0 347.0 12.0 0.0 140.0 38.0 16.0 t 0 0 0 0 0 0 0 120.0 347.0 347.0 15.0 9.0 347.0 11.0 347.0 347.0 207.0 173.0 156.0
MA1952.2_rc_shift6 (FOXJ2::ELF1_rc)				; positions_7nt_m1 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=9/24; ncol2=11; w=0; offset=6; strand=R; shift=6; score=0.465754; ------wCTTCCkGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 c 0 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 g 0 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 t 0 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0
MA1946.2_rc_shift7 (ETV5::FOXI1_rc)				; positions_7nt_m1 versus MA1946.2_rc (ETV5::FOXI1_rc); m=10/24; ncol2=12; w=0; offset=7; strand=R; shift=7; score=0.463901; -------CwTCCKGTTKaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 151.0 15.0 40.0 0.0 0.0 48.0 4.0 2.0 5.0 431.0 0.0 c 0 0 0 0 0 0 0 378.0 17.0 18.0 431.0 431.0 15.0 24.0 77.0 17.0 8.0 105.0 431.0 g 0 0 0 0 0 0 0 6.0 22.0 1.0 2.0 46.0 165.0 431.0 0.0 15.0 113.0 50.0 34.0 t 0 0 0 0 0 0 0 53.0 280.0 431.0 12.0 12.0 431.0 0.0 431.0 431.0 317.0 75.0 94.0
MA0062.4_shift5 (GABPA)				; positions_7nt_m1 versus MA0062.4 (GABPA); m=11/24; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.46169; -----cACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 c 0 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 g 0 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 t 0 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0
MA0474.4_rc_shift5 (Erg_rc)				; positions_7nt_m1 versus MA0474.4_rc (Erg_rc); m=12/24; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.457775; -----cACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 c 0 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 g 0 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 t 0 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0
MA1942.2_rc_shift6 (ETV2::FOXI1_rc)				; positions_7nt_m1 versus MA1942.2_rc (ETV2::FOXI1_rc); m=13/24; ncol2=11; w=0; offset=6; strand=R; shift=6; score=0.454774; ------rYwTCCTGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 1005.0 3.0 755.0 14.0 105.0 19.0 0.0 33.0 37.0 259.0 150.0 0 0 c 0 0 0 0 0 0 163.0 1278.0 18.0 0.0 1747.0 1747.0 14.0 84.0 183.0 391.0 175.0 0 0 g 0 0 0 0 0 0 742.0 20.0 84.0 35.0 0.0 30.0 388.0 1747.0 55.0 323.0 426.0 0 0 t 0 0 0 0 0 0 247.0 469.0 1747.0 1747.0 33.0 14.0 1359.0 38.0 1747.0 1747.0 1322.0 0 0
MA1950.2_rc_shift7 (FLI1::FOXI1_rc)				; positions_7nt_m1 versus MA1950.2_rc (FLI1::FOXI1_rc); m=14/24; ncol2=11; w=0; offset=7; strand=R; shift=7; score=0.436559; -------ywTCCTGTTta- ; cor=; Ncor= a 0 0 0 0 0 0 0 59.0 782.0 19.0 18.0 25.0 0.0 36.0 49.0 192.0 171.0 1768.0 0 c 0 0 0 0 0 0 0 1003.0 39.0 13.0 1768.0 1768.0 43.0 50.0 123.0 165.0 242.0 377.0 0 g 0 0 0 0 0 0 0 63.0 91.0 33.0 0.0 0.0 292.0 1768.0 1.0 183.0 454.0 493.0 0 t 0 0 0 0 0 0 0 764.0 1768.0 1768.0 0.0 45.0 1476.0 28.0 1768.0 1768.0 1768.0 394.0 0
MA0640.3_shift5 (ELF3)				; positions_7nt_m1 versus MA0640.3 (ELF3); m=15/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.433997; -----cACTTCCTg----- ; cor=; Ncor= a 0 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 c 0 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 g 0 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 t 0 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0
MA0598.4_shift5 (EHF)				; positions_7nt_m1 versus MA0598.4 (EHF); m=16/24; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.432845; -----cACTTCCTg----- ; cor=; Ncor= a 0 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 c 0 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 g 0 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 t 0 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0
MA1935.2_rc_shift7 (ERF::FOXI1_rc)				; positions_7nt_m1 versus MA1935.2_rc (ERF::FOXI1_rc); m=17/24; ncol2=10; w=0; offset=7; strand=R; shift=7; score=0.416441; -------yTTCCkGTtt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 c 0 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 g 0 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 t 0 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0
MA0473.4_rc_shift5 (ELF1_rc)				; positions_7nt_m1 versus MA0473.4_rc (ELF1_rc); m=18/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.415283; -----CACTTCCTG----- ; cor=; Ncor= a 0 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 c 0 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 g 0 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 t 0 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0
MA2332.1_rc_shift6 (ZNF175_rc)				; positions_7nt_m1 versus MA2332.1_rc (ZNF175_rc); m=19/24; ncol2=9; w=0; offset=6; strand=R; shift=6; score=0.414887; ------ACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 c 0 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 g 0 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 t 0 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0
MA1652.2_rc_shift3 (ZKSCAN5_rc)				; positions_7nt_m1 versus MA1652.2_rc (ZKSCAN5_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.409488; ---cTCACyTCC------- ; cor=; Ncor= a 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 c 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 g 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 t 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0
MA1992.2_rc_shift5 (Ikzf3_rc)				; positions_7nt_m1 versus MA1992.2_rc (Ikzf3_rc); m=21/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.407731; -----CACTTCCTG----- ; cor=; Ncor= a 0 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 c 0 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 g 0 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 t 0 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0
MA0645.2_rc_shift5 (ETV6_rc)				; positions_7nt_m1 versus MA0645.2_rc (ETV6_rc); m=22/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.405864; -----yACTTCCGs----- ; cor=; Ncor= a 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 c 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 g 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 t 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0
MA0761.3_rc_shift6 (ETV1_rc)				; positions_7nt_m1 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=6; strand=R; shift=6; score=0.405007; ------ACTTCCTGt---- ; cor=; Ncor= a 0 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 c 0 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 g 0 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 t 0 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0
MA1708.2_rc_shift5 (ETV7_rc)				; positions_7nt_m1 versus MA1708.2_rc (ETV7_rc); m=24/24; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.404527; -----yAYTTCCgs----- ; cor=; Ncor= a 0 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 c 0 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 g 0 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 t 0 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=17; shift=2; ncol=19; --yycACTTCCytcttyyy ; Alignment reference a 0 0 441 415 262 1733 33 62 36 57 37 227 286 287 271 282 294 418 419 c 0 0 544 588 1274 105 1809 80 62 1843 1830 1108 473 945 372 435 748 582 566 g 0 0 401 408 219 84 74 92 70 32 29 144 236 291 244 305 406 420 478 t 0 0 610 585 241 74 80 1762 1828 64 100 517 1001 473 1109 974 548 576 533
MA0081.3_shift3 (SPIB)				; positions_6nt_m2 versus MA0081.3 (SPIB); m=1/24; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.670555; ---tCACTTCCTCttt--- ; cor=; Ncor= a 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 0 c 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 0 g 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 0 t 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0 0
MA0080.7_rc_shift3 (Spi1_rc)				; positions_6nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/24; ncol2=13; w=0; offset=1; strand=R; shift=3; score=0.63891; ---cCACTTCCTCTTt--- ; cor=; Ncor= a 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 0 c 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 0 g 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 0 t 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0 0
MA0687.2_rc_shift4 (SPIC_rc)				; positions_6nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/24; ncol2=13; w=0; offset=2; strand=R; shift=4; score=0.58868; ----tACTTCCksWTTt-- ; cor=; Ncor= a 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 0 c 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 0 g 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 0 t 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0 0
MA0641.1_rc_shift4 (ELF4_rc)				; positions_6nt_m2 versus MA0641.1_rc (ELF4_rc); m=4/24; ncol2=12; w=0; offset=2; strand=R; shift=4; score=0.531505; ----yACTTCCGGGTt--- ; cor=; Ncor= a 0 0 0 0 113.0 979.0 6.0 4.0 2.0 2.0 0.0 0.0 1.0 106.0 149.0 192.0 0 0 0 c 0 0 0 0 463.0 28.0 1207.0 2.0 2.0 1226.0 1226.0 6.0 105.0 75.0 15.0 160.0 0 0 0 g 0 0 0 0 83.0 56.0 18.0 5.0 0.0 0.0 0.0 997.0 990.0 930.0 73.0 109.0 0 0 0 t 0 0 0 0 403.0 4.0 43.0 737.0 739.0 0.0 1.0 54.0 17.0 198.0 705.0 598.0 0 0 0
MA1952.2_rc_shift5 (FOXJ2::ELF1_rc)				; positions_6nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/24; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.488953; -----wCTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 0 0 c 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 0 0 g 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 0 0 t 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0 0 0
MA0062.4_shift4 (GABPA)				; positions_6nt_m2 versus MA0062.4 (GABPA); m=6/24; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.481264; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 0 0 c 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 0 0 g 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 0 0 t 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0 0 0
MA0474.4_rc_shift4 (Erg_rc)				; positions_6nt_m2 versus MA0474.4_rc (Erg_rc); m=7/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.469729; ----cACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 0 0 c 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 0 0 g 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 0 0 t 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0 0 0
MA0598.4_shift4 (EHF)				; positions_6nt_m2 versus MA0598.4 (EHF); m=8/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.468711; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 0 0 c 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 0 0 g 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 0 0 t 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0 0 0
MA1708.2_rc_shift4 (ETV7_rc)				; positions_6nt_m2 versus MA1708.2_rc (ETV7_rc); m=9/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.463677; ----yAYTTCCgs------ ; cor=; Ncor= a 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 0 0 c 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 0 0 g 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 0 0 t 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0 0 0
MA0640.3_shift4 (ELF3)				; positions_6nt_m2 versus MA0640.3 (ELF3); m=10/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.462155; ----cACTTCCTg------ ; cor=; Ncor= a 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 0 0 c 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 0 0 g 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 0 0 t 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0 0 0
MA0645.2_rc_shift4 (ETV6_rc)				; positions_6nt_m2 versus MA0645.2_rc (ETV6_rc); m=11/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.455512; ----yACTTCCGs------ ; cor=; Ncor= a 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 0 0 c 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 0 0 g 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 0 0 t 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0 0 0
MA1957.1_rc_shift0 (HOXB2::ELK1_rc)				; positions_6nt_m2 versus MA1957.1_rc (HOXB2::ELK1_rc); m=12/24; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.450743; TAAykACTTCCGgy----- ; cor=; Ncor= a 218.0 1338.0 1338.0 80.0 163.0 1338.0 3.0 88.0 4.0 7.0 6.0 19.0 45.0 130.0 0 0 0 0 0 c 161.0 47.0 38.0 524.0 195.0 22.0 1338.0 18.0 0.0 1338.0 1338.0 6.0 319.0 602.0 0 0 0 0 0 g 64.0 352.0 48.0 43.0 799.0 159.0 24.0 0.0 0.0 0.0 0.0 1338.0 1019.0 94.0 0 0 0 0 0 t 1338.0 88.0 38.0 814.0 539.0 11.0 48.0 1338.0 1338.0 0.0 8.0 54.0 117.0 737.0 0 0 0 0 0
MA1652.2_rc_shift2 (ZKSCAN5_rc)				; positions_6nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=13/24; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.450648; --cTCACyTCC-------- ; cor=; Ncor= a 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 0 0 c 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 0 0 g 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 0 0 t 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0 0 0
MA0473.4_rc_shift4 (ELF1_rc)				; positions_6nt_m2 versus MA0473.4_rc (ELF1_rc); m=14/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.448943; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 3089.0 40761.0 399.0 1043.0 368.0 646.0 387.0 636.0 1934.0 0 0 0 0 0 0 c 0 0 0 0 34757.0 2007.0 41738.0 779.0 676.0 45970.0 46642.0 932.0 4819.0 0 0 0 0 0 0 g 0 0 0 0 4236.0 1993.0 1570.0 705.0 796.0 505.0 421.0 4038.0 37923.0 0 0 0 0 0 0 t 0 0 0 0 5688.0 3009.0 4063.0 45243.0 45930.0 649.0 320.0 42164.0 3094.0 0 0 0 0 0 0
MA1483.3_rc_shift5 (ELF2_rc)				; positions_6nt_m2 versus MA1483.3_rc (ELF2_rc); m=15/24; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.44864; -----ACTTCCGGkw---- ; cor=; Ncor= a 0 0 0 0 0 84429.0 382.0 1811.0 159.0 20.0 18.0 12.0 228.0 13118.0 39326.0 0 0 0 0 c 0 0 0 0 0 4604.0 84429.0 41.0 10.0 84429.0 84429.0 231.0 14852.0 6180.0 10017.0 0 0 0 0 g 0 0 0 0 0 12976.0 5077.0 58.0 51.0 16.0 22.0 84429.0 84429.0 54007.0 12629.0 0 0 0 0 t 0 0 0 0 0 6161.0 28882.0 84429.0 84429.0 21.0 15.0 13644.0 7116.0 30422.0 84429.0 0 0 0 0
MA1992.2_rc_shift4 (Ikzf3_rc)				; positions_6nt_m2 versus MA1992.2_rc (Ikzf3_rc); m=16/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.436606; ----CACTTCCTG------ ; cor=; Ncor= a 0 0 0 0 109.0 810.0 25.0 93.0 6.0 8.0 6.0 19.0 31.0 0 0 0 0 0 0 c 0 0 0 0 808.0 111.0 1011.0 20.0 22.0 1141.0 1166.0 48.0 103.0 0 0 0 0 0 0 g 0 0 0 0 141.0 147.0 45.0 12.0 25.0 16.0 7.0 62.0 998.0 0 0 0 0 0 0 t 0 0 0 0 125.0 115.0 102.0 1058.0 1130.0 18.0 4.0 1054.0 51.0 0 0 0 0 0 0
MA2340.1_rc_shift4 (Zbtb2_rc)				; positions_6nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=17/24; ncol2=10; w=0; offset=2; strand=R; shift=4; score=0.435503; ----CaCTTCCGGT----- ; cor=; Ncor= a 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 0 0 c 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 0 0 g 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 0 0 t 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0 0 0
MA1935.2_rc_shift6 (ERF::FOXI1_rc)				; positions_6nt_m2 versus MA1935.2_rc (ERF::FOXI1_rc); m=18/24; ncol2=10; w=0; offset=4; strand=R; shift=6; score=0.435493; ------yTTCCkGTtt--- ; cor=; Ncor= a 0 0 0 0 0 0 16.0 236.0 10.0 20.0 0.0 0.0 52.0 12.0 224.0 178.0 0 0 0 c 0 0 0 0 0 0 433.0 5.0 6.0 719.0 719.0 27.0 112.0 175.0 150.0 125.0 0 0 0 g 0 0 0 0 0 0 87.0 89.0 1.0 33.0 28.0 316.0 719.0 50.0 161.0 287.0 0 0 0 t 0 0 0 0 0 0 287.0 719.0 719.0 0.0 35.0 403.0 87.0 719.0 719.0 719.0 0 0 0
MA2329.1_shift4 (ZBTB11)				; positions_6nt_m2 versus MA2329.1 (ZBTB11); m=19/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.430684; ----CACTTCCGG------ ; cor=; Ncor= a 0 0 0 0 128.0 1935.0 13.0 79.0 38.0 29.0 15.0 25.0 44.0 0 0 0 0 0 0 c 0 0 0 0 1926.0 120.0 2192.0 39.0 33.0 2342.0 2328.0 74.0 230.0 0 0 0 0 0 0 g 0 0 0 0 188.0 262.0 84.0 101.0 31.0 15.0 25.0 1977.0 2030.0 0 0 0 0 0 0 t 0 0 0 0 153.0 78.0 106.0 2176.0 2293.0 9.0 27.0 319.0 91.0 0 0 0 0 0 0
MA2332.1_rc_shift5 (ZNF175_rc)				; positions_6nt_m2 versus MA2332.1_rc (ZNF175_rc); m=20/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.42643; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 1104.0 24.0 73.0 24.0 47.0 27.0 35.0 82.0 169.0 0 0 0 0 0 c 0 0 0 0 0 102.0 1309.0 28.0 21.0 1373.0 1397.0 42.0 142.0 207.0 0 0 0 0 0 g 0 0 0 0 0 144.0 44.0 32.0 32.0 12.0 26.0 66.0 1138.0 177.0 0 0 0 0 0 t 0 0 0 0 0 126.0 99.0 1343.0 1399.0 44.0 26.0 1333.0 114.0 923.0 0 0 0 0 0
MA0136.4_rc_shift5 (Elf5_rc)				; positions_6nt_m2 versus MA0136.4_rc (Elf5_rc); m=21/24; ncol2=8; w=0; offset=3; strand=R; shift=5; score=0.423603; -----ACTTCCTT------ ; cor=; Ncor= a 0 0 0 0 0 28663.0 500.0 724.0 280.0 423.0 427.0 341.0 1450.0 0 0 0 0 0 0 c 0 0 0 0 0 4948.0 37803.0 481.0 390.0 40626.0 41025.0 2049.0 5204.0 0 0 0 0 0 0 g 0 0 0 0 0 3355.0 1234.0 389.0 580.0 510.0 182.0 978.0 6065.0 0 0 0 0 0 0 t 0 0 0 0 0 5180.0 2609.0 40552.0 40896.0 587.0 512.0 38778.0 29427.0 0 0 0 0 0 0
MA0750.3_rc_shift4 (ZBTB7A_rc)				; positions_6nt_m2 versus MA0750.3_rc (ZBTB7A_rc); m=22/24; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.421047; ----caCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 1270.0 8444.0 189.0 318.0 178.0 125.0 128.0 234.0 199.0 0 0 0 0 0 0 c 0 0 0 0 9142.0 1623.0 13112.0 261.0 335.0 14239.0 14130.0 624.0 1496.0 0 0 0 0 0 0 g 0 0 0 0 2485.0 3433.0 711.0 343.0 274.0 163.0 210.0 11293.0 12469.0 0 0 0 0 0 0 t 0 0 0 0 1744.0 1141.0 629.0 13719.0 13854.0 114.0 173.0 2490.0 477.0 0 0 0 0 0 0
MA0761.3_rc_shift5 (ETV1_rc)				; positions_6nt_m2 versus MA0761.3_rc (ETV1_rc); m=23/24; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.417772; -----ACTTCCTGt----- ; cor=; Ncor= a 0 0 0 0 0 26961.0 541.0 3073.0 363.0 569.0 350.0 397.0 963.0 4184.0 0 0 0 0 0 c 0 0 0 0 0 3146.0 31256.0 412.0 375.0 36121.0 36483.0 573.0 2389.0 6015.0 0 0 0 0 0 g 0 0 0 0 0 3889.0 1307.0 486.0 471.0 271.0 275.0 3064.0 32139.0 4339.0 0 0 0 0 0 t 0 0 0 0 0 3343.0 4235.0 33368.0 36130.0 378.0 231.0 33305.0 1848.0 22801.0 0 0 0 0 0
MA0076.3_shift4 (ELK4)				; positions_6nt_m2 versus MA0076.3 (ELK4); m=24/24; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.410498; ----crCTTCCGG------ ; cor=; Ncor= a 0 0 0 0 391.0 2034.0 0.0 8.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 c 0 0 0 0 1905.0 145.0 2688.0 0.0 0.0 3427.0 3427.0 0.0 501.0 0 0 0 0 0 0 g 0 0 0 0 570.0 1038.0 16.0 0.0 0.0 0.0 0.0 2915.0 2843.0 0 0 0 0 0 0 t 0 0 0 0 561.0 210.0 723.0 3419.0 3427.0 0.0 0.0 512.0 83.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=18; shift=3; ncol=21; ---wcttTCACTTCCCcttyy ; Alignment reference a 0 0 0 271 222 149 116 70 59 765 22 33 26 34 35 61 105 122 124 181 176 c 0 0 0 236 327 215 201 135 820 93 851 34 35 864 863 729 671 151 167 323 349 g 0 0 0 207 205 121 106 90 41 41 55 26 23 30 22 24 46 85 125 168 169 t 0 0 0 281 241 510 572 700 75 96 67 902 911 67 75 181 173 637 579 323 301
MA0081.3_shift7 (SPIB)				; positions_7nt_m2 versus MA0081.3 (SPIB); m=1/15; ncol2=13; w=0; offset=4; strand=D; shift=7; score=0.668293; -------tCACTTCCTCttt- ; cor=; Ncor= a 0 0 0 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 c 0 0 0 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 g 0 0 0 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 t 0 0 0 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0
MA0080.7_rc_shift7 (Spi1_rc)				; positions_7nt_m2 versus MA0080.7_rc (Spi1_rc); m=2/15; ncol2=13; w=0; offset=4; strand=R; shift=7; score=0.620013; -------cCACTTCCTCTTt- ; cor=; Ncor= a 0 0 0 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 c 0 0 0 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 g 0 0 0 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 t 0 0 0 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0
MA0687.2_rc_shift8 (SPIC_rc)				; positions_7nt_m2 versus MA0687.2_rc (SPIC_rc); m=3/15; ncol2=13; w=0; offset=5; strand=R; shift=8; score=0.564582; --------tACTTCCksWTTt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 c 0 0 0 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 g 0 0 0 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 t 0 0 0 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0
MA0517.2_shift3 (STAT1::STAT2)				; positions_7nt_m2 versus MA0517.2 (STAT1::STAT2); m=4/15; ncol2=13; w=0; offset=0; strand=D; shift=3; score=0.513646; ---AGTTTCrkTTYCy----- ; cor=; Ncor= a 0 0 0 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 0 0 0 0 c 0 0 0 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 0 0 0 0 g 0 0 0 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 0 0 0 0 t 0 0 0 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0 0 0 0 0
MA1952.2_rc_shift9 (FOXJ2::ELF1_rc)				; positions_7nt_m2 versus MA1952.2_rc (FOXJ2::ELF1_rc); m=5/15; ncol2=11; w=0; offset=6; strand=R; shift=9; score=0.451026; ---------wCTTCCkGTtt- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 884.0 47.0 86.0 9.0 0.0 22.0 35.0 156.0 33.0 366.0 288.0 0 c 0 0 0 0 0 0 0 0 0 17.0 1514.0 0.0 4.0 1514.0 1514.0 48.0 84.0 157.0 116.0 100.0 0 g 0 0 0 0 0 0 0 0 0 223.0 124.0 0.0 0.0 0.0 119.0 1028.0 1514.0 197.0 327.0 406.0 0 t 0 0 0 0 0 0 0 0 0 390.0 516.0 1514.0 1514.0 23.0 217.0 1514.0 95.0 1514.0 1514.0 1514.0 0
MA0051.2_rc_shift0 (IRF2_rc)				; positions_7nt_m2 versus MA0051.2_rc (IRF2_rc); m=6/15; ncol2=16; w=-3; offset=-3; strand=R; shift=0; score=0.44982; wwyrsTTTCrCTTTCs----- ; cor=; Ncor= a 4.0 4.0 2.0 3.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 0 c 1.0 2.0 3.0 2.0 6.0 0.0 0.0 0.0 12.0 0.0 10.0 0.0 0.0 0.0 10.0 7.0 0 0 0 0 0 g 1.0 0.0 2.0 7.0 6.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 4.0 0 0 0 0 0 t 6.0 6.0 5.0 0.0 0.0 12.0 12.0 12.0 0.0 0.0 2.0 12.0 11.0 12.0 2.0 0.0 0 0 0 0 0
MA1954.2_rc_shift9 (FOXO1::ELK1_rc)				; positions_7nt_m2 versus MA1954.2_rc (FOXO1::ELK1_rc); m=7/15; ncol2=13; w=0; offset=6; strand=R; shift=9; score=0.445273; ---------aCTTCCTGTTkw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 c 0 0 0 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 g 0 0 0 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 t 0 0 0 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0
MA1652.2_rc_shift6 (ZKSCAN5_rc)				; positions_7nt_m2 versus MA1652.2_rc (ZKSCAN5_rc); m=8/15; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.444139; ------cTCACyTCC------ ; cor=; Ncor= a 0 0 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 0 0 0 0 0 g 0 0 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 0 0 0 0 0 t 0 0 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0 0 0 0 0 0
MA0062.4_shift8 (GABPA)				; positions_7nt_m2 versus MA0062.4 (GABPA); m=9/15; ncol2=10; w=0; offset=5; strand=D; shift=8; score=0.433321; --------cACTTCCTGt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7639.0 52260.0 929.0 3885.0 862.0 1398.0 993.0 1722.0 2219.0 5344.0 0 0 0 c 0 0 0 0 0 0 0 0 41398.0 3988.0 55664.0 1443.0 1230.0 61373.0 63107.0 1542.0 6328.0 12006.0 0 0 0 g 0 0 0 0 0 0 0 0 6989.0 4873.0 2169.0 965.0 1633.0 1150.0 520.0 4561.0 51920.0 7720.0 0 0 0 t 0 0 0 0 0 0 0 0 9453.0 4358.0 6717.0 59186.0 61754.0 1558.0 859.0 57654.0 5012.0 40409.0 0 0 0
MA1708.2_rc_shift8 (ETV7_rc)				; positions_7nt_m2 versus MA1708.2_rc (ETV7_rc); m=10/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.427293; --------yAYTTCCgs---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1162.0 6836.0 0.0 118.0 35.0 20.0 0.0 923.0 800.0 0 0 0 0 c 0 0 0 0 0 0 0 0 6836.0 962.0 6836.0 3.0 0.0 6836.0 6836.0 919.0 6836.0 0 0 0 0 g 0 0 0 0 0 0 0 0 721.0 665.0 89.0 58.0 0.0 4.0 4.0 6836.0 4187.0 0 0 0 0 t 0 0 0 0 0 0 0 0 3564.0 390.0 3070.0 6836.0 6836.0 2.0 0.0 1878.0 2249.0 0 0 0 0
MA0474.4_rc_shift8 (Erg_rc)				; positions_7nt_m2 versus MA0474.4_rc (Erg_rc); m=11/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.426021; --------cACTTCCTGt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3259.0 21563.0 394.0 1533.0 184.0 278.0 196.0 266.0 733.0 2695.0 0 0 0 c 0 0 0 0 0 0 0 0 18018.0 2870.0 23600.0 277.0 274.0 29221.0 29562.0 463.0 2732.0 4936.0 0 0 0 g 0 0 0 0 0 0 0 0 3938.0 3310.0 1173.0 370.0 355.0 265.0 133.0 2559.0 24759.0 2742.0 0 0 0 t 0 0 0 0 0 0 0 0 4846.0 2318.0 4894.0 27881.0 29248.0 297.0 170.0 26773.0 1837.0 19688.0 0 0 0
MA0645.2_rc_shift8 (ETV6_rc)				; positions_7nt_m2 versus MA0645.2_rc (ETV6_rc); m=12/15; ncol2=9; w=0; offset=5; strand=R; shift=8; score=0.421976; --------yACTTCCGs---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1091.0 6687.0 0.0 41.0 0.0 22.0 13.0 308.0 441.0 0 0 0 0 c 0 0 0 0 0 0 0 0 3205.0 233.0 6687.0 32.0 7.0 6687.0 6687.0 397.0 4292.0 0 0 0 0 g 0 0 0 0 0 0 0 0 342.0 834.0 52.0 13.0 0.0 0.0 0.0 6379.0 2394.0 0 0 0 0 t 0 0 0 0 0 0 0 0 2049.0 184.0 768.0 6687.0 6687.0 21.0 7.0 1476.0 342.0 0 0 0 0
MA2340.1_rc_shift8 (Zbtb2_rc)				; positions_7nt_m2 versus MA2340.1_rc (Zbtb2_rc); m=13/15; ncol2=10; w=0; offset=5; strand=R; shift=8; score=0.412053; --------CaCTTCCGGT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 81.0 692.0 32.0 40.0 13.0 19.0 23.0 26.0 28.0 45.0 0 0 0 c 0 0 0 0 0 0 0 0 697.0 105.0 828.0 94.0 73.0 963.0 940.0 58.0 110.0 108.0 0 0 0 g 0 0 0 0 0 0 0 0 139.0 159.0 96.0 62.0 43.0 22.0 35.0 876.0 842.0 90.0 0 0 0 t 0 0 0 0 0 0 0 0 102.0 63.0 63.0 823.0 890.0 15.0 21.0 59.0 39.0 776.0 0 0 0
MA0598.4_shift8 (EHF)				; positions_7nt_m2 versus MA0598.4 (EHF); m=14/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.408261; --------cACTTCCTg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2114.0 13414.0 169.0 427.0 140.0 195.0 158.0 428.0 695.0 0 0 0 0 c 0 0 0 0 0 0 0 0 8887.0 456.0 13116.0 167.0 164.0 14833.0 14997.0 608.0 2983.0 0 0 0 0 g 0 0 0 0 0 0 0 0 1540.0 775.0 377.0 152.0 199.0 139.0 101.0 1538.0 9061.0 0 0 0 0 t 0 0 0 0 0 0 0 0 2827.0 723.0 1706.0 14622.0 14865.0 201.0 112.0 12794.0 2629.0 0 0 0 0
MA0640.3_shift8 (ELF3)				; positions_7nt_m2 versus MA0640.3 (ELF3); m=15/15; ncol2=9; w=0; offset=5; strand=D; shift=8; score=0.401853; --------cACTTCCTg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6456.0 40643.0 554.0 1171.0 432.0 662.0 447.0 776.0 2377.0 0 0 0 0 c 0 0 0 0 0 0 0 0 27973.0 2040.0 41950.0 1368.0 943.0 46481.0 47107.0 1315.0 9278.0 0 0 0 0 g 0 0 0 0 0 0 0 0 4122.0 2615.0 1365.0 768.0 954.0 566.0 473.0 1989.0 28319.0 0 0 0 0 t 0 0 0 0 0 0 0 0 9951.0 3204.0 4633.0 45195.0 46173.0 793.0 475.0 44422.0 8528.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 372 410 59 93 51 117 68 76 298 464 c 0 0 0 1337 997 2794 116 2543 2438 2546 291 1290 1087 g 0 0 0 982 1340 143 2750 377 346 302 2612 1060 1140 t 0 0 0 366 310 61 98 86 156 141 78 409 366
MA1564.2_shift2 (SP9)				; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=1/25; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.606792; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA0162.5_shift4 (EGR1)				; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=2/25; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.596297; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.584478; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1513.2_shift2 (KLF15)				; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=4/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.568985; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA0131.3_shift4 (HINFP)				; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=5/25; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.565927; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=6/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.55944; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.555856; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=8/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.555144; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=9/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.550314; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=10/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.545518; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_6nt_mkv4_m1 versus MA1961.2_rc (PATZ1_rc); m=11/25; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.545297; -sCCCCkCCCCs- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0
MA0733.2_shift4 (EGR4)				; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=12/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.545142; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=13/25; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.544991; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA0746.3_shift1 (SP3)				; oligos_6nt_mkv4_m1 versus MA0746.3 (SP3); m=14/25; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.539661; -rCCACGCCCmC- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=15/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536192; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0732.2_shift4 (EGR3)				; oligos_6nt_mkv4_m1 versus MA0732.2 (EGR3); m=16/25; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534391; ----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_6nt_mkv4_m1 versus MA0516.3_rc (SP2_rc); m=17/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.531318; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_6nt_mkv4_m1 versus MA0079.5_rc (SP1_rc); m=18/25; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.525542; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA1517.2_shift2 (KLF6)				; oligos_6nt_mkv4_m1 versus MA1517.2 (KLF6); m=19/25; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.519698; --cCACRCCCm-- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0
MA1516.2_shift0 (KLF3)				; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=20/25; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.483577; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0
MA1727.2_rc_shift2 (ZNF417_rc)				; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=21/25; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.472601; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0
MA0039.5_shift2 (KLF4)				; oligos_6nt_mkv4_m1 versus MA0039.5 (KLF4); m=22/25; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.448923; --CCCCACCC--- ; cor=; Ncor= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA0471.3_rc_shift1 (E2F6_rc)				; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=23/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.420916; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0
MA0865.3_shift1 (E2F8)				; oligos_6nt_mkv4_m1 versus MA0865.3 (E2F8); m=24/25; ncol2=9; w=-2; offset=-2; strand=D; shift=1; score=0.412997; -tTCCCGCcA--- ; cor=; Ncor= a 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 c 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 g 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 t 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=25/25; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.406837; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift1 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=12; shift=1; ncol=13; -sggGCAGGGCss ; Alignment reference a 0 570 626 258 243 54 2018 38 90 68 60 563 492 c 0 835 701 436 435 2632 293 113 258 51 2672 843 803 g 0 972 1068 1883 2040 112 427 2639 2438 2694 72 877 1099 t 0 473 455 273 132 52 112 60 64 37 46 567 456
MA0597.3_shift4 (THAP1)				; oligos_6nt_mkv4_m2 versus MA0597.3 (THAP1); m=1/16; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.588208; ----gcAGGGCA- ; cor=; Ncor= a 0 0 0 0 477.0 553.0 4731.0 22.0 40.0 91.0 98.0 4900.0 0 c 0 0 0 0 966.0 3351.0 219.0 127.0 183.0 67.0 4861.0 95.0 0 g 0 0 0 0 3186.0 933.0 220.0 4958.0 4893.0 4942.0 104.0 172.0 0 t 0 0 0 0 549.0 341.0 8.0 71.0 62.0 78.0 115.0 11.0 0
MA0742.2_shift1 (KLF12)				; oligos_6nt_mkv4_m2 versus MA0742.2 (KLF12); m=2/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.576729; -GGGGCGGGG--- ; cor=; Ncor= a 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 c 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 g 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 t 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0
MA0516.3_shift1 (SP2)				; oligos_6nt_mkv4_m2 versus MA0516.3 (SP2); m=3/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.557931; -GGGGCGGGg--- ; cor=; Ncor= a 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 c 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 g 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 t 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0
MA1722.2_rc_shift1 (ZSCAN31_rc)				; oligos_6nt_mkv4_m2 versus MA1722.2_rc (ZSCAN31_rc); m=4/16; ncol2=18; w=0; offset=0; strand=R; shift=1; score=0.554601; -GmmGCAGGGCAr ; cor=; Ncor= a 0 990.0 3109.0 2569.0 120.0 10.0 6989.0 69.0 291.0 22.0 90.0 6181.0 3376.0 c 0 457.0 3084.0 4197.0 3.0 7143.0 26.0 122.0 14.0 9.0 7077.0 960.0 3.0 g 0 6344.0 1112.0 173.0 7114.0 0.0 438.0 7073.0 7066.0 7141.0 80.0 11.0 6451.0 t 0 640.0 1651.0 1811.0 28.0 22.0 37.0 28.0 51.0 9.0 11.0 42.0 38.0
MA0685.2_shift1 (SP4)				; oligos_6nt_mkv4_m2 versus MA0685.2 (SP4); m=5/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.548004; -gGGGMGGrG--- ; cor=; Ncor= a 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 c 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 g 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 t 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0
MA1511.2_shift1 (KLF10)				; oligos_6nt_mkv4_m2 versus MA1511.2 (KLF10); m=6/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.543351; -GGGGCGKGG--- ; cor=; Ncor= a 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 c 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 g 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 t 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0
MA2328.1_rc_shift4 (ZBED4_rc)				; oligos_6nt_mkv4_m2 versus MA2328.1_rc (ZBED4_rc); m=7/16; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.542909; ----GCGGrGCGg ; cor=; Ncor= a 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 c 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 g 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 t 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0
MA1961.2_shift0 (PATZ1)				; oligos_6nt_mkv4_m2 versus MA1961.2 (PATZ1); m=8/16; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.542038; sGGGGmGGGGs-- ; cor=; Ncor= a 125.0 68.0 195.0 1.0 1.0 355.0 1.0 1.0 1.0 54.0 51.0 0 0 c 288.0 228.0 78.0 1.0 1.0 489.0 1.0 41.0 34.0 1.0 392.0 0 0 g 543.0 680.0 727.0 997.0 997.0 1.0 997.0 957.0 964.0 944.0 523.0 0 0 t 44.0 24.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 1.0 34.0 0 0
MA0740.2_shift1 (KLF14)				; oligos_6nt_mkv4_m2 versus MA0740.2 (KLF14); m=9/16; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.533352; -kGGGCGKGG--- ; cor=; Ncor= a 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 c 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 g 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 t 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0
MA1513.2_rc_shift2 (KLF15_rc)				; oligos_6nt_mkv4_m2 versus MA1513.2_rc (KLF15_rc); m=10/16; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.506257; --GGGCGGGg--- ; cor=; Ncor= a 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 c 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 g 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 t 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0
MA2341.1_rc_shift2 (FEZF2_rc)				; oligos_6nt_mkv4_m2 versus MA2341.1_rc (FEZF2_rc); m=11/16; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.492192; --AGGCTGGG--- ; cor=; Ncor= a 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 c 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 g 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 t 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0
MA1959.2_shift2 (KLF7)				; oligos_6nt_mkv4_m2 versus MA1959.2 (KLF7); m=12/16; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.485121; --GGGCGKgG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 g 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 t 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0
MA0493.3_shift2 (KLF1)				; oligos_6nt_mkv4_m2 versus MA0493.3 (KLF1); m=13/16; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.469121; --GGGyGkGG--- ; cor=; Ncor= a 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 c 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 g 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 t 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0
MA1629.2_shift0 (Zic2)				; oligos_6nt_mkv4_m2 versus MA1629.2 (Zic2); m=14/16; ncol2=9; w=-1; offset=-1; strand=D; shift=0; score=0.44206; CaCAGCAGG---- ; cor=; Ncor= a 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 0 0 0 0 c 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 0 0 0 0 g 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 0 0 0 0 t 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 0 0 0 0
MA1628.2_shift2 (Zic1::Zic2)				; oligos_6nt_mkv4_m2 versus MA1628.2 (Zic1::Zic2); m=15/16; ncol2=7; w=0; offset=1; strand=D; shift=2; score=0.434164; --CAGCAGG---- ; cor=; Ncor= a 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 0 0 0 0 c 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 0 0 0 0 g 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 0 0 0 0 t 0 0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 0 0 0 0
MA0697.3_shift2 (Zic3)				; oligos_6nt_mkv4_m2 versus MA0697.3 (Zic3); m=16/16; ncol2=7; w=0; offset=1; strand=D; shift=2; score=0.433055; --CAGCAGG---- ; cor=; Ncor= a 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 347.0 0 0 0 0 c 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 955.0 0 0 0 0 g 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 24340.0 0 0 0 0 t 0 0 334.0 596.0 266.0 792.0 858.0 967.0 532.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift3 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---twCTTTTTCwh ; Alignment reference a 0 0 0 339 479 139 106 163 104 111 73 86 472 454 c 0 0 0 313 342 1448 25 41 35 38 31 1507 366 434 g 0 0 0 353 307 41 44 51 33 39 18 29 167 293 t 0 0 0 680 557 57 1510 1430 1513 1497 1563 63 680 504
MA1125.2_rc_shift3 (ZNF384_rc)				; oligos_7nt_mkv5_m5 versus MA1125.2_rc (ZNF384_rc); m=1/9; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.561373; ---ttTTTTTT--- ; cor=; Ncor= a 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0
MA1623.2_rc_shift2 (Stat2_rc)				; oligos_7nt_mkv5_m5 versus MA1623.2_rc (Stat2_rc); m=2/9; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.558784; --TTTCTGTTTc-- ; cor=; Ncor= a 0 0 141.0 69.0 47.0 55.0 588.0 242.0 62.0 77.0 161.0 397.0 0 0 c 0 0 157.0 98.0 163.0 3707.0 74.0 524.0 87.0 71.0 168.0 2287.0 0 0 g 0 0 147.0 45.0 49.0 45.0 151.0 2907.0 72.0 75.0 76.0 306.0 0 0 t 0 0 3514.0 3747.0 3700.0 152.0 3146.0 286.0 3738.0 3736.0 3554.0 969.0 0 0
MA0606.3_rc_shift6 (Nfat5_rc)				; oligos_7nt_mkv5_m5 versus MA0606.3_rc (Nfat5_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.51179; ------TTTTCCAT ; cor=; Ncor= a 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 c 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 g 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 t 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0
MA0508.4_shift5 (PRDM1)				; oligos_7nt_mkv5_m5 versus MA0508.4 (PRDM1); m=4/9; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.506922; -----CTTTCTC-- ; cor=; Ncor= a 0 0 0 0 0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 0 0 c 0 0 0 0 0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 0 0 g 0 0 0 0 0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 0 0 t 0 0 0 0 0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 0 0
MA0517.2_shift0 (STAT1::STAT2)				; oligos_7nt_mkv5_m5 versus MA0517.2 (STAT1::STAT2); m=5/9; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.506829; AGTTTCrkTTYCy- ; cor=; Ncor= a 430.0 3.0 0.0 3.0 3.0 0.0 255.0 107.0 4.0 10.0 4.0 15.0 28.0 0 c 7.0 148.0 2.0 2.0 13.0 581.0 75.0 111.0 13.0 2.0 170.0 489.0 365.0 0 g 151.0 467.0 0.0 0.0 4.0 0.0 191.0 161.0 10.0 0.0 4.0 9.0 36.0 0 t 32.0 2.0 618.0 615.0 600.0 39.0 99.0 241.0 593.0 608.0 442.0 107.0 191.0 0
MA1525.3_rc_shift6 (NFATC4_rc)				; oligos_7nt_mkv5_m5 versus MA1525.3_rc (NFATC4_rc); m=6/9; ncol2=9; w=0; offset=3; strand=R; shift=6; score=0.495057; ------wkTTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0
MA0624.3_rc_shift8 (Nfatc1_rc)				; oligos_7nt_mkv5_m5 versus MA0624.3_rc (Nfatc1_rc); m=7/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.440345; --------TTTCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0
MA0625.3_rc_shift8 (NFATC3_rc)				; oligos_7nt_mkv5_m5 versus MA0625.3_rc (NFATC3_rc); m=8/9; ncol2=6; w=0; offset=5; strand=R; shift=8; score=0.427359; --------tTTCCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1089.0 0.0 8.0 0.0 0.0 3553.0 c 0 0 0 0 0 0 0 0 475.0 184.0 825.0 5866.0 5866.0 451.0 g 0 0 0 0 0 0 0 0 1586.0 0.0 261.0 0.0 0.0 2313.0 t 0 0 0 0 0 0 0 0 5866.0 5866.0 5866.0 0.0 0.0 289.0
MA0442.3_rc_shift5 (SOX10_rc)				; oligos_7nt_mkv5_m5 versus MA0442.3_rc (SOX10_rc); m=9/9; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.420687; -----CTTTGT--- ; cor=; Ncor= a 0 0 0 0 0 20.0 61.0 39.0 12.0 52.0 25.0 0 0 0 c 0 0 0 0 0 2012.0 12.0 20.0 7.0 11.0 3.0 0 0 0 g 0 0 0 0 0 13.0 23.0 28.0 7.0 1989.0 4.0 0 0 0 t 0 0 0 0 0 10.0 1959.0 1968.0 2029.0 3.0 2023.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---waCAAAAACwa ; Alignment reference a 0 0 0 601 795 56 1632 1487 1581 1500 1670 44 779 614 c 0 0 0 292 316 1527 39 110 100 123 42 1554 262 407 g 0 0 0 324 283 39 29 81 34 41 22 18 234 327 t 0 0 0 570 393 165 87 109 72 123 53 171 512 439
MA1125.2_shift6 (ZNF384)				; oligos_7nt_mkv5_m4 versus MA1125.2 (ZNF384); m=1/5; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.559348; ------AAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0
MA1623.2_shift1 (Stat2)				; oligos_7nt_mkv5_m4 versus MA1623.2 (Stat2); m=2/5; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.432602; -gAAACAGAAA--- ; cor=; Ncor= a 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0
MA0847.4_shift0 (FOXD2)				; oligos_7nt_mkv5_m4 versus MA0847.4 (FOXD2); m=3/5; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.419807; yTAAryAAACA--- ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0
MA0869.3_shift2 (Sox11)				; oligos_7nt_mkv5_m4 versus MA0869.3 (Sox11); m=4/5; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.41166; --GAACAAAG---- ; cor=; Ncor= a 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 0 c 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 0 g 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 0 t 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0 0
MA1616.2_shift6 (Prdm15)				; oligos_7nt_mkv5_m4 versus MA1616.2 (Prdm15); m=5/5; ncol2=11; w=0; offset=3; strand=D; shift=6; score=0.400138; ------gAAAACCT ; cor=; Ncor= a 0 0 0 0 0 0 252.0 2011.0 2121.0 1942.0 1801.0 67.0 222.0 220.0 c 0 0 0 0 0 0 325.0 60.0 34.0 47.0 138.0 1941.0 1886.0 361.0 g 0 0 0 0 0 0 1333.0 135.0 58.0 200.0 152.0 101.0 107.0 28.0 t 0 0 0 0 0 0 327.0 31.0 24.0 48.0 146.0 128.0 22.0 1628.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)				; positions_7nt_m4; m=0 (reference); ncol1=23; shift=0; ncol=23; wwaaagaggaACTTCCTCtttyh ; Alignment reference a 163 153 234 313 313 106 317 99 103 311 485 24 24 10 24 25 33 28 92 65 105 143 151 c 136 127 122 83 75 114 77 85 108 105 29 481 26 25 504 498 36 477 96 95 139 145 169 g 131 139 111 83 101 278 80 276 253 79 28 32 17 29 20 22 9 36 30 76 86 112 98 t 145 156 108 96 86 77 101 115 111 80 33 38 508 511 27 30 497 34 357 339 245 175 157
MA0080.7_rc_shift8 (Spi1_rc)				; positions_7nt_m4 versus MA0080.7_rc (Spi1_rc); m=1/7; ncol2=13; w=0; offset=8; strand=R; shift=8; score=0.510878; --------cCACTTCCTCTTt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 12758.0 5766.0 79357.0 1375.0 2889.0 1028.0 956.0 1211.0 3016.0 4375.0 11187.0 6546.0 8997.0 0 0 c 0 0 0 0 0 0 0 0 57669.0 83385.0 5128.0 89140.0 1822.0 1063.0 101383.0 99360.0 9636.0 79986.0 10220.0 10614.0 22807.0 0 0 g 0 0 0 0 0 0 0 0 11577.0 6075.0 3716.0 7067.0 958.0 1095.0 831.0 550.0 2594.0 12201.0 2330.0 5758.0 6863.0 0 0 t 0 0 0 0 0 0 0 0 23194.0 9972.0 16997.0 7616.0 99529.0 102012.0 2028.0 4077.0 89952.0 8636.0 81461.0 82280.0 66531.0 0 0
MA0081.3_shift8 (SPIB)				; positions_7nt_m4 versus MA0081.3 (SPIB); m=2/7; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.503594; --------tCACTTCCTCttt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 0 0 c 0 0 0 0 0 0 0 0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 0 0 g 0 0 0 0 0 0 0 0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 0 0 t 0 0 0 0 0 0 0 0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 0 0
MA0687.2_rc_shift9 (SPIC_rc)				; positions_7nt_m4 versus MA0687.2_rc (SPIC_rc); m=3/7; ncol2=13; w=0; offset=9; strand=R; shift=9; score=0.48243; ---------tACTTCCksWTTt- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 0 c 0 0 0 0 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 0 g 0 0 0 0 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 0 t 0 0 0 0 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 0
MA1954.2_rc_shift10 (FOXO1::ELK1_rc)				; positions_7nt_m4 versus MA1954.2_rc (FOXO1::ELK1_rc); m=4/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.446412; ----------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 980.0 19.0 188.0 7.0 13.0 6.0 5.0 55.0 16.0 53.0 263.0 791.0 52.0 c 0 0 0 0 0 0 0 0 0 0 234.0 1357.0 22.0 16.0 1357.0 1357.0 15.0 23.0 64.0 57.0 31.0 292.0 636.0 g 0 0 0 0 0 0 0 0 0 0 377.0 103.0 35.0 33.0 7.0 4.0 228.0 1357.0 21.0 36.0 1094.0 82.0 233.0 t 0 0 0 0 0 0 0 0 0 0 195.0 248.0 1357.0 1357.0 9.0 2.0 1357.0 18.0 1357.0 1357.0 1010.0 566.0 722.0
MA1956.2_rc_shift10 (FOXO1::FLI1_rc)				; positions_7nt_m4 versus MA1956.2_rc (FOXO1::FLI1_rc); m=5/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.443609; ----------ACTTCCTGTTkwC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 208.0 0.0 34.0 1.0 1.0 0.0 0.0 3.0 6.0 0.0 4.0 208.0 0.0 c 0 0 0 0 0 0 0 0 0 0 16.0 208.0 0.0 0.0 208.0 208.0 1.0 0.0 0.0 0.0 0.0 15.0 169.0 g 0 0 0 0 0 0 0 0 0 0 44.0 12.0 4.0 0.0 0.0 4.0 10.0 208.0 0.0 5.0 65.0 57.0 16.0 t 0 0 0 0 0 0 0 0 0 0 5.0 47.0 208.0 208.0 8.0 12.0 208.0 0.0 208.0 208.0 142.0 100.0 39.0
MA1953.2_rc_shift10 (FOXO1::ELF1_rc)				; positions_7nt_m4 versus MA1953.2_rc (FOXO1::ELF1_rc); m=6/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.44198; ----------acTTCCTGTTkay ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 248.0 6.0 71.0 3.0 3.0 6.0 0.0 42.0 4.0 12.0 24.0 174.0 10.0 c 0 0 0 0 0 0 0 0 0 0 39.0 248.0 8.0 4.0 248.0 248.0 7.0 0.0 21.0 7.0 2.0 41.0 145.0 g 0 0 0 0 0 0 0 0 0 0 88.0 32.0 0.0 22.0 11.0 9.0 15.0 248.0 4.0 26.0 89.0 36.0 37.0 t 0 0 0 0 0 0 0 0 0 0 65.0 87.0 248.0 248.0 4.0 9.0 248.0 0.0 248.0 248.0 159.0 74.0 102.0
MA1955.2_rc_shift10 (FOXO1::ELK3_rc)				; positions_7nt_m4 versus MA1955.2_rc (FOXO1::ELK3_rc); m=7/7; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.438292; ----------aCTTCCTGTTkwy ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 127.0 5.0 12.0 8.0 4.0 0.0 1.0 4.0 0.0 2.0 0.0 127.0 10.0 c 0 0 0 0 0 0 0 0 0 0 18.0 127.0 1.0 0.0 127.0 127.0 7.0 0.0 9.0 5.0 0.0 16.0 73.0 g 0 0 0 0 0 0 0 0 0 0 40.0 10.0 12.0 0.0 4.0 4.0 28.0 127.0 0.0 1.0 56.0 40.0 7.0 t 0 0 0 0 0 0 0 0 0 0 16.0 24.0 127.0 127.0 3.0 2.0 127.0 0.0 127.0 127.0 71.0 77.0 54.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=10; shift=1; ncol=11; -ssCGaGCGss ; Alignment reference a 0 267 279 48 28 996 39 38 36 251 286 c 0 651 629 1647 73 346 51 1667 97 747 581 g 0 678 775 123 1722 412 1762 59 1701 567 772 t 0 274 187 52 47 116 18 106 36 305 231
MA1959.2_shift4 (KLF7)				; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=1/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.50664; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0
MA1513.2_rc_shift4 (KLF15_rc)				; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=2/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.498688; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0
MA0632.3_shift0 (TCFL5)				; oligos_6nt_mkv4_m5 versus MA0632.3 (TCFL5); m=3/9; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.486758; kCrCGCGC--- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0
MA2126.1_shift4 (Zfp961)				; oligos_6nt_mkv4_m5 versus MA2126.1 (Zfp961); m=4/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.483162; ----GGGCGCC ; cor=; Ncor= a 0 0 0 0 18.0 13.0 11.0 8.0 23.0 12.0 9.0 c 0 0 0 0 20.0 22.0 13.0 1219.0 8.0 1367.0 1353.0 g 0 0 0 0 1372.0 1312.0 1278.0 9.0 1372.0 23.0 30.0 t 0 0 0 0 8.0 71.0 116.0 182.0 15.0 16.0 26.0
MA1515.2_rc_shift4 (KLF2_rc)				; oligos_6nt_mkv4_m5 versus MA1515.2_rc (KLF2_rc); m=5/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.479677; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 c 0 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 g 0 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 t 0 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0
MA1713.2_rc_shift3 (ZNF610_rc)				; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=6/9; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.472234; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0
MA0493.3_shift4 (KLF1)				; oligos_6nt_mkv4_m5 versus MA0493.3 (KLF1); m=7/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.468135; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 c 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 g 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 t 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0
MA1650.2_rc_shift4 (ZBTB14_rc)				; oligos_6nt_mkv4_m5 versus MA1650.2_rc (ZBTB14_rc); m=8/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.458023; ----GTGCGCG ; cor=; Ncor= a 0 0 0 0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 c 0 0 0 0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 g 0 0 0 0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 t 0 0 0 0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0
MA1516.2_rc_shift4 (KLF3_rc)				; oligos_6nt_mkv4_m5 versus MA1516.2_rc (KLF3_rc); m=9/9; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.419505; ----GGGCGyG ; cor=; Ncor= a 0 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 c 0 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 g 0 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 t 0 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0