/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title DAR_8C_control_vs_Nr5a2_knockdown -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	6584
	Sum of sequence lengths      	1523591
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	231
	Possible positions           	1517007
 Oligonucleotide statistics:
	Total occurrences    	1144366
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	1517007
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	6	102
	2	-24	[-479,-460]	-469.5	7	138
	3	-23	[-459,-440]	-449.5	11	182
	4	-22	[-439,-420]	-429.5	12	230
	5	-21	[-419,-400]	-409.5	13	250
	6	-20	[-399,-380]	-389.5	13	260
	7	-19	[-379,-360]	-369.5	15	283
	8	-18	[-359,-340]	-349.5	20	339
	9	-17	[-339,-320]	-329.5	28	489
	10	-16	[-319,-300]	-309.5	41	737
	11	-15	[-299,-280]	-289.5	67	1079
	12	-14	[-279,-260]	-269.5	118	1905
	13	-13	[-259,-240]	-249.5	177	2984
	14	-12	[-239,-220]	-229.5	270	4560
	15	-11	[-219,-200]	-209.5	393	6709
	16	-10	[-199,-180]	-189.5	576	9724
	17	-9	[-179,-160]	-169.5	863	14489
	18	-8	[-159,-140]	-149.5	1637	24038
	19	-7	[-139,-120]	-129.5	2493	41990
	20	-6	[-119,-100]	-109.5	3536	60703
	21	-5	[-99,-80]	-89.5	4848	84532
	22	-4	[-79,-60]	-69.5	6528	114258
	23	-3	[-59,-40]	-49.5	6584	131680
	24	-2	[-39,-20]	-29.5	6584	131680
	25	-1	[-19,0]	-9.5	6584	131680
	26	0	[1,20]	10.5	6584	131680
	27	1	[21,40]	30.5	6584	131680
	28	2	[41,60]	50.5	6584	131520
	29	3	[61,80]	70.5	6375	110944
	30	4	[81,100]	90.5	4734	81937
	31	5	[101,120]	110.5	3451	58629
	32	6	[121,140]	130.5	2436	40258
	33	7	[141,160]	150.5	1569	22574
	34	8	[161,180]	170.5	840	13910
	35	9	[181,200]	190.5	563	9355
	36	10	[201,220]	210.5	388	6470
	37	11	[221,240]	230.5	263	4388
	38	12	[241,260]	250.5	173	2870
	39	13	[261,280]	270.5	114	1808
	40	14	[281,300]	290.5	64	1027
	41	15	[301,320]	310.5	40	713
	42	16	[321,340]	330.5	28	474
	43	17	[341,360]	350.5	20	330
	44	18	[361,380]	370.5	15	280
	45	19	[381,400]	390.5	13	260
	46	20	[401,420]	410.5	13	248
	47	21	[421,440]	430.5	12	229
	48	22	[441,460]	450.5	11	173
	49	23	[461,480]	470.5	7	134
	50	24	[481,500]	490.5	5	95

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 81068 188.0 49 3.7e-18 5.9e-17 16.23 1 12 10 10 18 12 26 25 20 24 28 76 102 145 251 311 544 782 1280 2038 3073 4447 6136 7134 7198 7351 7058 7134 7074 5745 4380 3095 1950 1179 691 578 373 246 134 129 53 40 24 26 18 33 15 17 9 8 6
cc cc 80441 184.3 49 1.5e-17 2.3e-16 15.63 2 4 19 6 13 4 9 21 30 30 32 70 118 136 234 369 498 753 1275 2440 3340 4603 6116 7054 6771 6827 6871 6948 7136 5873 4276 2933 2163 1189 660 493 324 225 172 114 66 56 25 18 23 17 33 21 14 9 10
ac ac 61064 140.0 49 1.1e-10 1.7e-09 8.76 3 9 12 17 15 9 14 18 21 29 41 42 99 129 220 281 388 599 970 1767 2490 3426 4666 5303 5146 5242 5214 5069 5414 4543 3205 2258 1631 941 572 403 243 188 126 102 50 31 23 23 8 14 22 15 9 3 4
tt tt 83694 129.1 49 3.9e-09 6.3e-08 7.20 4 8 8 9 9 15 15 21 15 35 45 71 120 164 257 356 540 814 1313 2134 3240 4612 6047 7214 7360 7344 7479 7589 7489 6216 4606 3012 2037 1174 715 504 336 263 184 89 60 40 25 18 21 18 17 12 7 10 7
cg cg 26045 125.4 49 1.3e-08 2.1e-07 6.69 5 5 9 10 3 7 5 4 11 12 13 12 31 30 70 93 131 228 360 695 983 1484 1971 2273 2371 2290 2266 2339 2405 1986 1397 995 629 319 200 121 72 60 39 25 14 13 8 11 4 9 7 6 8 5 6
tc tc 70755 103.4 49 9.4e-06 0.00015 3.82 6 5 7 8 15 18 18 17 21 20 42 71 101 146 203 341 453 667 1116 2004 2799 3910 5444 6259 6156 6123 6043 6181 6124 5232 3822 2609 1781 1007 607 385 295 208 156 89 51 56 27 13 20 21 19 15 11 13 6
gg gg 80174 96.6 49 5.8e-05 0.00093 3.03 7 8 7 10 9 17 10 19 20 44 63 50 103 161 222 318 559 781 1265 2093 3176 4509 6104 6970 6834 6784 6968 6934 7131 6086 4285 3224 2098 1162 727 429 339 207 154 84 54 33 34 16 15 13 12 11 8 9 5
at at 58039 96.4 49 6.2e-05 0.00099 3.00 8 5 4 11 10 15 15 16 17 24 32 48 81 121 171 301 416 565 916 1503 2220 3140 4496 5050 5170 5148 5093 5106 5070 4075 3150 2135 1467 819 502 366 235 155 123 71 42 27 19 26 17 10 10 7 7 5 7
ca ca 84711 93.3 49 1.4e-04 0.0022 2.65 9 6 12 15 19 20 19 28 30 38 44 64 113 187 265 425 534 837 1384 2447 3433 4860 6354 7423 7255 7252 7210 7223 7330 6245 4499 3159 2249 1235 783 553 364 239 167 130 65 44 32 18 17 18 21 22 10 8 6
ct ct 90480 82.5 49 1.9e-03 0.031 1.51 10 6 4 8 12 13 18 17 28 30 52 87 132 179 266 405 617 871 1448 2615 3660 5037 6972 7883 7800 7793 7763 7640 7964 6680 4833 3362 2349 1340 798 540 386 259 198 110 86 63 34 18 20 21 15 16 11 13 8
gt gt 61000 76.9 49 6.6e-03 0.11 0.98 11 3 7 5 13 15 14 15 7 19 51 47 77 140 192 276 390 599 1031 1702 2526 3384 4635 5235 5069 5263 5264 5194 5279 4680 3340 2317 1579 866 582 368 255 175 135 80 44 27 22 12 17 12 13 9 9 5 1
ta ta 53743 76.5 49 7.2e-03 0.12 0.94 12 8 5 9 4 10 13 12 11 22 36 43 68 121 155 269 379 565 867 1395 2105 2978 4222 4622 4684 4673 4706 4564 4655 3861 2884 2028 1423 776 482 345 222 168 116 64 44 31 13 27 13 9 11 9 6 5 5
tg tg 84983 75.8 49 8.3e-03 0.13 0.87 13 4 4 7 16 14 13 19 16 36 52 73 118 177 263 372 571 811 1398 2388 3502 4618 6364 7365 7170 7396 7339 7255 7513 6392 4610 3208 2238 1217 830 508 359 220 188 118 72 30 35 17 21 12 8 9 8 4 5
gc gc 69503 73.2 49 1.4e-02 0.22 0.65 14 5 8 6 6 10 12 13 30 29 28 55 70 108 176 308 428 673 1130 1988 2815 3978 5192 6054 6069 5910 6045 5991 6095 5169 3748 2665 1828 971 606 428 287 168 119 87 54 37 25 13 8 12 5 14 8 11 8
ag ag 88968 70.4 49 2.4e-02 0.39 0.41 15 5 13 7 9 10 23 17 24 32 47 68 94 191 266 400 598 900 1423 2452 3521 5026 6659 7677 7626 7484 7710 7741 7741 6699 4666 3495 2427 1294 839 577 410 240 159 124 73 55 36 15 16 16 19 17 15 7 5
ga ga 69698 69.5 49 2.9e-02 0.46 0.34 16 9 9 14 8 7 17 12 18 25 41 53 89 148 226 298 477 674 1058 1873 2739 3772 5285 6012 6021 5930 6098 6147 6227 5209 3668 2666 1864 1003 657 437 282 171 133 99 53 40 36 19 12 14 16 9 13 4 6 
 Host name	rsat
 Job started	2026-01-05.113418
 Job done	2026-01-05.113426
 Seconds	8.14
	user	8.14
	system	0.01
	cuser	0.01
;	csystem	0