/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	18	3405
		file1	2	10	3036
		file1	3	10	4669
		file1	4	10	3335
		file1	5	17	3106
		file1	6	12	4515
		file1	7	18	2969
		file1	8	11	2098
		file1	9	11	3008
		file1	10	11	4391
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		18		3405
		file2		2		10		3036
		file2		3		10		4669
		file2		4		10		3335
		file2		5		17		3106
		file2		6		12		4515
		file2		7		18		2969
		file2		8		11		2098
		file2		9		11		3008
		file2		10		11		4391
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m2 0.953 0.953 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m4 0.953 0.953 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 0.997 0.941 17 18 17 18 0.9444 1.0000 0.9444 R -1
oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m5 0.997 0.941 18 17 17 18 0.9444 0.9444 1.0000 R 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m1 0.996 0.941 17 18 17 18 0.9444 1.0000 0.9444 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m5 0.996 0.941 18 17 17 18 0.9444 0.9444 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m1 0.999 0.894 18 18 17 19 0.8947 0.9444 0.9444 R -1
oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m2 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m2 0.999 0.894 18 18 17 19 0.8947 0.9444 0.9444 R -1
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m3 0.737 0.737 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m2 0.737 0.737 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m4 0.721 0.721 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m3 0.721 0.721 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m4 oligos_6nt_mkv4_m3 oligos_7nt_mkv5_m4 oligos_6nt_mkv4_m3 0.791 0.719 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_7nt_mkv5_m4 oligos_6nt_mkv4_m3 oligos_7nt_mkv5_m4 0.791 0.719 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 0.771 0.499 11 17 11 17 0.6471 1.0000 0.6471 D -5
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 0.771 0.499 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m1 0.754 0.461 11 18 11 18 0.6111 1.0000 0.6111 D -5
oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m3 0.754 0.461 18 11 11 18 0.6111 0.6111 1.0000 D 5
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 0.752 0.460 18 11 11 18 0.6111 0.6111 1.0000 R 1
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 0.752 0.460 11 18 11 18 0.6111 1.0000 0.6111 R -6 
 Host name	rsat
 Job started	2026-01-05.113526
 Job done	2026-01-05.113536
 Seconds	1.17
	user	1.17
	system	0.47
	cuser	7.51
;	csystem	0.93