One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.113356_2026-01-05.113356_6ezgHe/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=17; shift=1; ncol=18; -sTGAGTTCmAGGmCAGC ; Alignment reference a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351

oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/4; ncol2=17; w=0; offset=0; strand=D; shift=1; score= 1; -sTGAGTTCmAGGmCAGC ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351

oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m2_rc; m=2/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.941484; wsTGAGTTCmAGGmCAGC ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 207 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 2258 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 181 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275 323

oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m1; m=3/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score=0.94089; -sTGAGTTCmAGGmCAGC ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404

oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.498812; ------twCAAGGACat- ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 0 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 0 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 0 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; wwATTTTTAww ; Alignment reference a 1250 1183 3727 281 187 121 154 306 3880 1424 1437 c 624 897 189 204 178 270 187 117 108 743 911 g 914 816 200 184 196 132 209 134 139 662 645 t 1603 1495 275 3722 3830 3868 3841 3834 264 1562 1398

oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwATTTTTAww ; cor=; Ncor= a 1250 1183 3727 281 187 121 154 306 3880 1424 1437 c 624 897 189 204 178 270 187 117 108 743 911 g 914 816 200 184 196 132 209 134 139 662 645 t 1603 1495 275 3722 3830 3868 3841 3834 264 1562 1398

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGaGCGcs ; Alignment reference a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388

oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m2; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGaGCGcs ; cor=; Ncor= a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388

oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m4_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.953416; ssCGtGCGys ; cor=; Ncor= a 418 548 58 115 242 54 76 87 377 525 c 1082 897 3102 92 646 154 2964 80 1359 991 g 1305 1525 88 3087 650 3047 76 3100 736 1350 t 530 365 87 41 1797 80 219 68 863 469

oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m3; m=3/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.737412; ssCGGCCGss ; cor=; Ncor= a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=18; shift=1; ncol=19; -sTGAGTTCmAGGmCAGCC ; Alignment reference a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 248 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 2554 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 234 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404 369

oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score= 1; -sTGAGTTCmAGGmCAGCC ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 248 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 2554 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 234 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404 369

oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m5; m=2/4; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.94089; -sTGAGTTCmAGGmCAGC- ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 0 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 0 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 0 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351 0

oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)
; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m2_rc; m=3/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.894014; wsTGAGTTCmAGGmCAGC- ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 207 0 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 2258 0 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 181 0 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275 323 0

oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)
; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.46076; ------twCAAGGACat-- ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 0 0 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 0 0 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 0 0 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m2_shift1 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=18; shift=1; ncol=19; -GCTGkCCTkGAACTCAsw ; Alignment reference a 0 323 275 75 152 322 47 29 19 84 102 2865 2782 47 99 105 2224 240 1448 c 0 181 2247 54 20 62 2833 2859 44 346 39 19 74 2739 67 2365 258 1115 185 g 0 2258 158 61 2769 1765 31 14 23 781 2804 56 73 41 46 126 254 1256 328 t 0 207 289 2779 28 820 58 67 2883 1758 24 29 40 142 2757 373 233 358 1008

oligos_7nt_mkv5_m2_shift1 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m2; m=1/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score= 1; -GCTGkCCTkGAACTCAsw ; cor=; Ncor= a 0 323 275 75 152 322 47 29 19 84 102 2865 2782 47 99 105 2224 240 1448 c 0 181 2247 54 20 62 2833 2859 44 346 39 19 74 2739 67 2365 258 1115 185 g 0 2258 158 61 2769 1765 31 14 23 781 2804 56 73 41 46 126 254 1256 328 t 0 207 289 2779 28 820 58 67 2883 1758 24 29 40 142 2757 373 233 358 1008

oligos_6nt_mkv4_m5_rc_shift1 (oligos_6nt_mkv4_m5_rc)
; oligos_7nt_mkv5_m2 versus oligos_6nt_mkv4_m5_rc; m=2/4; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.941484; -GCTGkCCTkGAACTCAs- ; cor=; Ncor= a 0 351 305 98 163 744 41 38 19 119 62 2967 2810 64 83 85 2208 268 0 c 0 206 2293 53 49 69 2999 2996 56 277 32 28 99 2763 88 2550 293 1245 0 g 0 2282 180 55 2847 1363 13 16 18 873 2990 70 104 94 72 96 290 1195 0 t 0 267 328 2900 47 930 53 56 3013 1837 22 41 93 185 2863 375 315 398 0

oligos_6nt_mkv4_m1_rc_shift0 (oligos_6nt_mkv4_m1_rc)
; oligos_7nt_mkv5_m2 versus oligos_6nt_mkv4_m1_rc; m=3/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.894014; GGCTGkCCTkGAACTCAs- ; cor=; Ncor= a 369 404 296 64 170 337 52 32 54 110 178 3166 2993 90 138 135 2390 317 0 c 234 252 2549 56 26 67 3246 3262 55 418 86 67 145 2960 112 2735 364 1308 0 g 2554 2455 243 45 3155 2069 40 20 28 924 3093 111 175 116 85 139 312 1338 0 t 248 294 317 3240 54 932 67 91 3268 1953 48 61 92 239 3070 396 339 442 0

oligos_7nt_mkv5_m3_rc_shift2 (oligos_7nt_mkv5_m3_rc)
; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m3_rc; m=4/4; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.459748; --atGTCCTTGwa------ ; cor=; Ncor= a 0 0 621 498 109 185 101 102 85 111 174 661 668 0 0 0 0 0 0 c 0 0 502 353 28 41 1903 1914 54 74 54 375 477 0 0 0 0 0 0 g 0 0 494 321 1920 52 46 27 61 83 1804 436 445 0 0 0 0 0 0 t 0 0 481 926 41 1820 48 55 1898 1830 66 626 508 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift0 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; srCCACACCcws ; Alignment reference a 956 1515 416 86 4069 68 3410 86 201 321 1480 743 c 1393 969 3734 4277 236 4267 132 4187 4131 2833 953 1358 g 1265 1305 182 54 92 86 708 141 75 326 829 1471 t 901 726 183 98 118 94 265 101 108 1035 1253 943

oligos_7nt_mkv5_m1_shift0 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m1; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; srCCACACCcws ; cor=; Ncor= a 956 1515 416 86 4069 68 3410 86 201 321 1480 743 c 1393 969 3734 4277 236 4267 132 4187 4131 2833 953 1358 g 1265 1305 182 54 92 86 708 141 75 326 829 1471 t 901 726 183 98 118 94 265 101 108 1035 1253 943

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGGCCGss ; Alignment reference a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551

oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m3; m=1/4; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGGCCGss ; cor=; Ncor= a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551

oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m2; m=2/4; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.737412; ssCGaGCGcs ; cor=; Ncor= a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388

oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)
; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m4_rc; m=3/4; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.721156; ssCGtGCGys ; cor=; Ncor= a 418 548 58 115 242 54 76 87 377 525 c 1082 897 3102 92 646 154 2964 80 1359 991 g 1305 1525 88 3087 650 3047 76 3100 736 1350 t 530 365 87 41 1797 80 219 68 863 469

oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4)
; oligos_6nt_mkv4_m3 versus oligos_7nt_mkv5_m4; m=4/4; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.719305; bsCGGCTGCs ; cor=; Ncor= a 376 343 61 81 70 42 157 63 83 414 c 1071 1112 2778 244 514 2843 324 194 2692 1150 g 770 1139 118 2607 2340 92 347 2635 117 904 t 791 414 51 76 84 31 2180 116 116 540

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift6 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=6; ncol=17; ------twCAAGGACat ; Alignment reference a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621

oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m3; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=6; score= 1; ------twCAAGGACat ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621

oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m5; m=2/4; ncol2=17; w=-5; offset=-5; strand=D; shift=1; score=0.498812; -sTGAGTTCmAGGmCAG ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305

oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)
; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m1; m=3/4; ncol2=18; w=-5; offset=-5; strand=D; shift=1; score=0.46076; -sTGAGTTCmAGGmCAG ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296

oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m2_rc; m=4/4; ncol2=18; w=-6; offset=-6; strand=R; shift=0; score=0.459748; wsTGAGTTCmAGGmCAG ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; bsCGGCTGCsk ; Alignment reference a 376 343 61 81 70 42 157 63 83 414 398 c 1071 1112 2778 244 514 2843 324 194 2692 1150 751 g 770 1139 118 2607 2340 92 347 2635 117 904 1082 t 791 414 51 76 84 31 2180 116 116 540 777

oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; bsCGGCTGCsk ; cor=; Ncor= a 376 343 61 81 70 42 157 63 83 414 398 c 1071 1112 2778 244 514 2843 324 194 2692 1150 751 g 770 1139 118 2607 2340 92 347 2635 117 904 1082 t 791 414 51 76 84 31 2180 116 116 540 777

oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m3; m=2/2; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.719305; ssCGGCCGss- ; cor=; Ncor= a 551 731 69 97 117 154 62 81 455 601 0 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 0 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 0 t 599 456 83 62 154 117 99 68 733 551 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=0; ncol=10; srCGCaCGss ; Alignment reference a 469 863 68 219 80 1797 41 87 365 530 c 1350 736 3100 76 3047 650 3087 88 1525 1305 g 991 1359 80 2964 154 646 92 3102 897 1082 t 525 377 87 76 54 242 115 58 548 418

oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m4; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; srCGCaCGss ; cor=; Ncor= a 469 863 68 219 80 1797 41 87 365 530 c 1350 736 3100 76 3047 650 3087 88 1525 1305 g 991 1359 80 2964 154 646 92 3102 897 1082 t 525 377 87 76 54 242 115 58 548 418

oligos_6nt_mkv4_m2_rc_shift0 (oligos_6nt_mkv4_m2_rc)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m2_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.953416; sgCGCtCGss ; cor=; Ncor= a 388 631 42 63 60 422 49 51 339 373 c 1293 746 2824 60 2779 650 2896 178 1366 1260 g 953 1296 106 2860 117 646 58 2745 973 972 t 402 363 64 53 80 1318 33 62 358 431

oligos_6nt_mkv4_m3_rc_shift0 (oligos_6nt_mkv4_m3_rc)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m3_rc; m=3/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.721156; ssCGGCCGss ; cor=; Ncor= a 551 733 68 99 117 154 62 83 456 599 c 1932 1476 4296 617 724 3674 3893 224 2004 1587 g 1585 2005 224 3891 3674 724 617 4293 1478 1932 t 601 455 81 62 154 117 97 69 731 551

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=17; shift=1; ncol=18; -sTGAGTTCmAGGmCAGC ; Alignment reference a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/4; ncol2=17; w=0; offset=0; strand=D; shift=1; score= 1; -sTGAGTTCmAGGmCAGC ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351
oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m2_rc; m=2/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.941484; wsTGAGTTCmAGGmCAGC ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 207 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 2258 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 181 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275 323
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m1; m=3/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score=0.94089; -sTGAGTTCmAGGmCAGC ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404
oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.498812; ------twCAAGGACat- ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 0 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 0 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 0 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGaGCGcs ; Alignment reference a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388
oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m2; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGaGCGcs ; cor=; Ncor= a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388
oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m4_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.953416; ssCGtGCGys ; cor=; Ncor= a 418 548 58 115 242 54 76 87 377 525 c 1082 897 3102 92 646 154 2964 80 1359 991 g 1305 1525 88 3087 650 3047 76 3100 736 1350 t 530 365 87 41 1797 80 219 68 863 469
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m3; m=3/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.737412; ssCGGCCGss ; cor=; Ncor= a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=18; shift=1; ncol=19; -sTGAGTTCmAGGmCAGCC ; Alignment reference a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 248 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 2554 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 234 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404 369
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score= 1; -sTGAGTTCmAGGmCAGCC ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 294 248 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 2455 2554 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 252 234 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296 404 369
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m5; m=2/4; ncol2=17; w=0; offset=0; strand=D; shift=1; score=0.94089; -sTGAGTTCmAGGmCAGC- ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 267 0 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 2282 0 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 206 0 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305 351 0
oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)				; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m2_rc; m=3/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.894014; wsTGAGTTCmAGGmCAGC- ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 207 0 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 2258 0 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 181 0 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275 323 0
oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)				; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.46076; ------twCAAGGACat-- ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 0 0 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 0 0 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 0 0 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m2_shift1 (oligos_7nt_mkv5_m2)				; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=18; shift=1; ncol=19; -GCTGkCCTkGAACTCAsw ; Alignment reference a 0 323 275 75 152 322 47 29 19 84 102 2865 2782 47 99 105 2224 240 1448 c 0 181 2247 54 20 62 2833 2859 44 346 39 19 74 2739 67 2365 258 1115 185 g 0 2258 158 61 2769 1765 31 14 23 781 2804 56 73 41 46 126 254 1256 328 t 0 207 289 2779 28 820 58 67 2883 1758 24 29 40 142 2757 373 233 358 1008
oligos_7nt_mkv5_m2_shift1 (oligos_7nt_mkv5_m2)				; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m2; m=1/4; ncol2=18; w=0; offset=0; strand=D; shift=1; score= 1; -GCTGkCCTkGAACTCAsw ; cor=; Ncor= a 0 323 275 75 152 322 47 29 19 84 102 2865 2782 47 99 105 2224 240 1448 c 0 181 2247 54 20 62 2833 2859 44 346 39 19 74 2739 67 2365 258 1115 185 g 0 2258 158 61 2769 1765 31 14 23 781 2804 56 73 41 46 126 254 1256 328 t 0 207 289 2779 28 820 58 67 2883 1758 24 29 40 142 2757 373 233 358 1008
oligos_6nt_mkv4_m5_rc_shift1 (oligos_6nt_mkv4_m5_rc)				; oligos_7nt_mkv5_m2 versus oligos_6nt_mkv4_m5_rc; m=2/4; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.941484; -GCTGkCCTkGAACTCAs- ; cor=; Ncor= a 0 351 305 98 163 744 41 38 19 119 62 2967 2810 64 83 85 2208 268 0 c 0 206 2293 53 49 69 2999 2996 56 277 32 28 99 2763 88 2550 293 1245 0 g 0 2282 180 55 2847 1363 13 16 18 873 2990 70 104 94 72 96 290 1195 0 t 0 267 328 2900 47 930 53 56 3013 1837 22 41 93 185 2863 375 315 398 0
oligos_6nt_mkv4_m1_rc_shift0 (oligos_6nt_mkv4_m1_rc)				; oligos_7nt_mkv5_m2 versus oligos_6nt_mkv4_m1_rc; m=3/4; ncol2=18; w=-1; offset=-1; strand=R; shift=0; score=0.894014; GGCTGkCCTkGAACTCAs- ; cor=; Ncor= a 369 404 296 64 170 337 52 32 54 110 178 3166 2993 90 138 135 2390 317 0 c 234 252 2549 56 26 67 3246 3262 55 418 86 67 145 2960 112 2735 364 1308 0 g 2554 2455 243 45 3155 2069 40 20 28 924 3093 111 175 116 85 139 312 1338 0 t 248 294 317 3240 54 932 67 91 3268 1953 48 61 92 239 3070 396 339 442 0
oligos_7nt_mkv5_m3_rc_shift2 (oligos_7nt_mkv5_m3_rc)				; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m3_rc; m=4/4; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.459748; --atGTCCTTGwa------ ; cor=; Ncor= a 0 0 621 498 109 185 101 102 85 111 174 661 668 0 0 0 0 0 0 c 0 0 502 353 28 41 1903 1914 54 74 54 375 477 0 0 0 0 0 0 g 0 0 494 321 1920 52 46 27 61 83 1804 436 445 0 0 0 0 0 0 t 0 0 481 926 41 1820 48 55 1898 1830 66 626 508 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)				; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGGCCGss ; Alignment reference a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)				; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m3; m=1/4; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGGCCGss ; cor=; Ncor= a 551 731 69 97 117 154 62 81 455 601 c 1932 1478 4293 617 724 3674 3891 224 2005 1585 g 1587 2004 224 3893 3674 724 617 4296 1476 1932 t 599 456 83 62 154 117 99 68 733 551
oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m2; m=2/4; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.737412; ssCGaGCGcs ; cor=; Ncor= a 431 358 62 33 1318 80 53 64 363 402 c 972 973 2745 58 646 117 2860 106 1296 953 g 1260 1366 178 2896 650 2779 60 2824 746 1293 t 373 339 51 49 422 60 63 42 631 388
oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)				; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m4_rc; m=3/4; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.721156; ssCGtGCGys ; cor=; Ncor= a 418 548 58 115 242 54 76 87 377 525 c 1082 897 3102 92 646 154 2964 80 1359 991 g 1305 1525 88 3087 650 3047 76 3100 736 1350 t 530 365 87 41 1797 80 219 68 863 469
oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4)				; oligos_6nt_mkv4_m3 versus oligos_7nt_mkv5_m4; m=4/4; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.719305; bsCGGCTGCs ; cor=; Ncor= a 376 343 61 81 70 42 157 63 83 414 c 1071 1112 2778 244 514 2843 324 194 2692 1150 g 770 1139 118 2607 2340 92 347 2635 117 904 t 791 414 51 76 84 31 2180 116 116 540

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=6; ncol=17; ------twCAAGGACat ; Alignment reference a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621
oligos_7nt_mkv5_m3_shift6 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m3; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=6; score= 1; ------twCAAGGACat ; cor=; Ncor= a 0 0 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621
oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)				; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m5; m=2/4; ncol2=17; w=-5; offset=-5; strand=D; shift=1; score=0.498812; -sTGAGTTCmAGGmCAG ; cor=; Ncor= a 0 398 315 375 2863 185 93 41 22 1837 3013 56 53 930 47 2900 328 c 0 1195 290 96 72 94 104 70 2990 873 18 16 13 1363 2847 55 180 g 0 1245 293 2550 88 2763 99 28 32 277 56 2996 2999 69 49 53 2293 t 0 268 2208 85 83 64 2810 2967 62 119 19 38 41 744 163 98 305
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)				; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m1; m=3/4; ncol2=18; w=-5; offset=-5; strand=D; shift=1; score=0.46076; -sTGAGTTCmAGGmCAG ; cor=; Ncor= a 0 442 339 396 3070 239 92 61 48 1953 3268 91 67 932 54 3240 317 c 0 1338 312 139 85 116 175 111 3093 924 28 20 40 2069 3155 45 243 g 0 1308 364 2735 112 2960 145 67 86 418 55 3262 3246 67 26 56 2549 t 0 317 2390 135 138 90 2993 3166 178 110 54 32 52 337 170 64 296
oligos_7nt_mkv5_m2_rc_shift0 (oligos_7nt_mkv5_m2_rc)				; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m2_rc; m=4/4; ncol2=18; w=-6; offset=-6; strand=R; shift=0; score=0.459748; wsTGAGTTCmAGGmCAG ; cor=; Ncor= a 1008 358 233 373 2757 142 40 29 24 1758 2883 67 58 820 28 2779 289 c 328 1256 254 126 46 41 73 56 2804 781 23 14 31 1765 2769 61 158 g 185 1115 258 2365 67 2739 74 19 39 346 44 2859 2833 62 20 54 2247 t 1448 240 2224 105 99 47 2782 2865 102 84 19 29 47 322 152 75 275

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=0; ncol=10; srCGCaCGss ; Alignment reference a 469 863 68 219 80 1797 41 87 365 530 c 1350 736 3100 76 3047 650 3087 88 1525 1305 g 991 1359 80 2964 154 646 92 3102 897 1082 t 525 377 87 76 54 242 115 58 548 418
oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m4; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; srCGCaCGss ; cor=; Ncor= a 469 863 68 219 80 1797 41 87 365 530 c 1350 736 3100 76 3047 650 3087 88 1525 1305 g 991 1359 80 2964 154 646 92 3102 897 1082 t 525 377 87 76 54 242 115 58 548 418
oligos_6nt_mkv4_m2_rc_shift0 (oligos_6nt_mkv4_m2_rc)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m2_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.953416; sgCGCtCGss ; cor=; Ncor= a 388 631 42 63 60 422 49 51 339 373 c 1293 746 2824 60 2779 650 2896 178 1366 1260 g 953 1296 106 2860 117 646 58 2745 973 972 t 402 363 64 53 80 1318 33 62 358 431
oligos_6nt_mkv4_m3_rc_shift0 (oligos_6nt_mkv4_m3_rc)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m3_rc; m=3/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.721156; ssCGGCCGss ; cor=; Ncor= a 551 733 68 99 117 154 62 83 456 599 c 1932 1476 4296 617 724 3674 3893 224 2004 1587 g 1585 2005 224 3891 3674 724 617 4293 1478 1932 t 601 455 81 62 154 117 97 69 731 551