compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files prefix $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf file1 1 18 3405 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m1 | MA1540.3 | oligos_6nt_mkv4_m1 | NR5A1 | 0.916 | 0.611 | 18 | 12 | 12 | 18 | 0.6667 | 0.6667 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m1 | MA1541.2 | oligos_6nt_mkv4_m1 | NR6A1 | 0.723 | 0.562 | 18 | 14 | 14 | 18 | 0.7778 | 0.7778 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m1 | MA0505.3 | oligos_6nt_mkv4_m1 | Nr5A2 | 0.915 | 0.457 | 18 | 9 | 9 | 18 | 0.5000 | 0.5000 | 1.0000 | R | 6 |
| oligos_6nt_mkv4_m1 | MA0141.4 | oligos_6nt_mkv4_m1 | ESRRB | 0.796 | 0.442 | 18 | 10 | 10 | 18 | 0.5556 | 0.5556 | 1.0000 | D | 6 |
| oligos_6nt_mkv4_m1 | MA1973.2 | oligos_6nt_mkv4_m1 | ZKSCAN3 | 0.719 | 0.432 | 18 | 14 | 12 | 20 | 0.6000 | 0.6667 | 0.8571 | D | 6 |
| oligos_6nt_mkv4_m1 | MA0592.4 | oligos_6nt_mkv4_m1 | ESRRA | 0.854 | 0.427 | 18 | 9 | 9 | 18 | 0.5000 | 0.5000 | 1.0000 | D | 6 |
| oligos_6nt_mkv4_m1 | MA0071.1 | oligos_6nt_mkv4_m1 | RORA | 0.745 | 0.414 | 18 | 10 | 10 | 18 | 0.5556 | 0.5556 | 1.0000 | D | 5 |
| oligos_6nt_mkv4_m1 | MA0643.2 | oligos_6nt_mkv4_m1 | Esrrg | 0.827 | 0.413 | 18 | 9 | 9 | 18 | 0.5000 | 0.5000 | 1.0000 | D | 6 |
Host name rsat Job started 2026-01-05.115142 Job done 2026-01-05.115147 Seconds 1.09 user 1.09 system 0.19 cuser 2.99 ; csystem 0.27