/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf
		file1	1	12	4515
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m1 MA1107.3 oligos_7nt_mkv5_m1 KLF9 0.902 0.827 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m1 MA0746.3 oligos_7nt_mkv5_m1 SP3 0.836 0.766 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m1 MA0741.1 oligos_7nt_mkv5_m1 KLF16 0.818 0.750 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m1 MA1512.2 oligos_7nt_mkv5_m1 KLF11 0.855 0.712 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_7nt_mkv5_m1 MA0599.1 oligos_7nt_mkv5_m1 KLF5 0.830 0.692 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv5_m1 MA1516.2 oligos_7nt_mkv5_m1 KLF3 0.826 0.688 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_7nt_mkv5_m1 MA1564.2 oligos_7nt_mkv5_m1 SP9 0.821 0.684 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_7nt_mkv5_m1 MA1517.2 oligos_7nt_mkv5_m1 KLF6 0.904 0.678 12 9 9 12 0.7500 0.7500 1.0000 D 2
oligos_7nt_mkv5_m1 MA0747.2 oligos_7nt_mkv5_m1 SP8 0.841 0.647 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_7nt_mkv5_m1 MA1515.2 oligos_7nt_mkv5_m1 KLF2 0.917 0.611 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_7nt_mkv5_m1 MA0493.3 oligos_7nt_mkv5_m1 KLF1 0.855 0.570 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA1511.2 oligos_7nt_mkv5_m1 KLF10 0.755 0.566 12 9 9 12 0.7500 0.7500 1.0000 R 2
oligos_7nt_mkv5_m1 MA0740.2 oligos_7nt_mkv5_m1 KLF14 0.754 0.565 12 9 9 12 0.7500 0.7500 1.0000 R 2
oligos_7nt_mkv5_m1 MA0039.5 oligos_7nt_mkv5_m1 KLF4 0.843 0.562 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_7nt_mkv5_m1 MA1567.3 oligos_7nt_mkv5_m1 Tbx6 0.732 0.549 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_7nt_mkv5_m1 MA2123.1 oligos_7nt_mkv5_m1 Hand1 0.731 0.548 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_7nt_mkv5_m1 MA0742.2 oligos_7nt_mkv5_m1 KLF12 0.727 0.545 12 9 9 12 0.7500 0.7500 1.0000 R 2
oligos_7nt_mkv5_m1 MA0657.2 oligos_7nt_mkv5_m1 KLF13 0.745 0.526 12 17 12 17 0.7059 1.0000 0.7059 D 0
oligos_7nt_mkv5_m1 MA0800.2 oligos_7nt_mkv5_m1 EOMES 0.701 0.526 12 9 9 12 0.7500 0.7500 1.0000 R 1
oligos_7nt_mkv5_m1 MA1959.2 oligos_7nt_mkv5_m1 KLF7 0.773 0.515 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0807.1 oligos_7nt_mkv5_m1 TBX5 0.766 0.511 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0801.1 oligos_7nt_mkv5_m1 MGA 0.756 0.504 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0803.1 oligos_7nt_mkv5_m1 TBX15 0.748 0.499 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0805.1 oligos_7nt_mkv5_m1 TBX1 0.733 0.489 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0806.1 oligos_7nt_mkv5_m1 TBX4 0.724 0.482 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_7nt_mkv5_m1 MA0002.3 oligos_7nt_mkv5_m1 Runx1 0.774 0.476 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m1 MA1620.2 oligos_7nt_mkv5_m1 Ptf1A 0.710 0.473 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv5_m1 MA0130.1 oligos_7nt_mkv5_m1 ZNF354C 0.914 0.457 12 6 6 12 0.5000 0.5000 1.0000 D 0
oligos_7nt_mkv5_m1 MA1989.2 oligos_7nt_mkv5_m1 Bcl11B 0.732 0.450 12 9 8 13 0.6154 0.6667 0.8889 D -1
oligos_7nt_mkv5_m1 MA0162.5 oligos_7nt_mkv5_m1 EGR1 0.758 0.433 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m1 MA1558.2 oligos_7nt_mkv5_m1 SNAI1 0.726 0.424 12 7 7 12 0.5833 0.5833 1.0000 R 5
oligos_7nt_mkv5_m1 MA1648.2 oligos_7nt_mkv5_m1 TCF12 0.713 0.416 12 7 7 12 0.5833 0.5833 1.0000 D 5
oligos_7nt_mkv5_m1 MA0522.4 oligos_7nt_mkv5_m1 TCF3 0.709 0.414 12 7 7 12 0.5833 0.5833 1.0000 D 5
oligos_7nt_mkv5_m1 MA0479.2 oligos_7nt_mkv5_m1 FOXH1 0.757 0.408 12 8 7 13 0.5385 0.5833 0.8750 D -1 
 Host name	rsat
 Job started	2026-01-05.115209
 Job done	2026-01-05.115226
 Seconds	2.82
	user	2.82
	system	0.76
	cuser	12.39
;	csystem	1.13