One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift4 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift4 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=4; ncol=15; ----twCAAGGACat ; Alignment reference a 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621

MA0141.4_shift5 (ESRRB)
; oligos_7nt_mkv5_m3 versus MA0141.4 (ESRRB); m=1/11; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.708446; -----TCAAGGTCAw ; cor=; Ncor= a 0 0 0 0 0 108.0 9.0 1746.0 1746.0 3.0 1.0 6.0 2.0 1746.0 702.0 c 0 0 0 0 0 373.0 1746.0 1.0 1.0 2.0 4.0 11.0 1746.0 0.0 256.0 g 0 0 0 0 0 75.0 255.0 0.0 3.0 1746.0 1746.0 8.0 1.0 56.0 42.0 t 0 0 0 0 0 1746.0 7.0 4.0 0.0 1.0 3.0 1746.0 15.0 3.0 1045.0

MA0505.3_rc_shift5 (Nr5A2_rc)
; oligos_7nt_mkv5_m3 versus MA0505.3_rc (Nr5A2_rc); m=2/11; ncol2=9; w=0; offset=1; strand=R; shift=5; score=0.684546; -----TCAAGGtCA- ; cor=; Ncor= a 0 0 0 0 0 1125.0 322.0 29653.0 29125.0 343.0 237.0 2733.0 483.0 21101.0 0 c 0 0 0 0 0 2402.0 29010.0 285.0 359.0 166.0 124.0 6736.0 27158.0 2303.0 0 g 0 0 0 0 0 645.0 870.0 338.0 694.0 29734.0 29854.0 1185.0 869.0 3118.0 0 t 0 0 0 0 0 26370.0 340.0 266.0 364.0 299.0 327.0 19888.0 2032.0 4020.0 0

MA0592.4_shift5 (ESRRA)
; oligos_7nt_mkv5_m3 versus MA0592.4 (ESRRA); m=3/11; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.655011; -----tCAAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 2305.0 972.0 24681.0 24744.0 480.0 223.0 1003.0 293.0 24648.0 0 c 0 0 0 0 0 6446.0 21854.0 355.0 415.0 340.0 146.0 379.0 23989.0 226.0 0 g 0 0 0 0 0 1850.0 2323.0 556.0 569.0 24676.0 25332.0 949.0 786.0 781.0 0 t 0 0 0 0 0 15394.0 846.0 403.0 267.0 499.0 294.0 23664.0 927.0 340.0 0

MA0643.2_shift5 (Esrrg)
; oligos_7nt_mkv5_m3 versus MA0643.2 (Esrrg); m=4/11; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.642545; -----tsAAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 3489.0 705.0 14909.0 14909.0 12.0 0.0 472.0 7.0 14909.0 0 c 0 0 0 0 0 5974.0 10009.0 0.0 12.0 7.0 17.0 41.0 14909.0 34.0 0 g 0 0 0 0 0 2800.0 4901.0 603.0 34.0 14909.0 14909.0 844.0 271.0 1561.0 0 t 0 0 0 0 0 14909.0 490.0 195.0 5.0 298.0 14.0 14909.0 1280.0 60.0 0

MA1540.3_shift2 (NR5A1)
; oligos_7nt_mkv5_m3 versus MA1540.3 (NR5A1); m=5/11; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.624489; --agtTCAAGGtCA- ; cor=; Ncor= a 0 0 2945.0 708.0 376.0 160.0 72.0 4287.0 4340.0 106.0 87.0 389.0 67.0 4201.0 0 c 0 0 398.0 558.0 747.0 564.0 4316.0 193.0 86.0 45.0 53.0 964.0 4271.0 144.0 0 g 0 0 633.0 2825.0 729.0 130.0 189.0 125.0 160.0 4461.0 4440.0 171.0 112.0 154.0 0 t 0 0 721.0 606.0 2845.0 3843.0 120.0 92.0 111.0 85.0 117.0 3173.0 247.0 198.0 0

MA2338.1_shift7 (Ppara)
; oligos_7nt_mkv5_m3 versus MA2338.1 (Ppara); m=6/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score= 0.4998; -------AAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 16299.0 17009.0 258.0 354.0 259.0 440.0 13045.0 0 c 0 0 0 0 0 0 0 258.0 641.0 446.0 68.0 83.0 16858.0 2036.0 0 g 0 0 0 0 0 0 0 788.0 328.0 17024.0 17412.0 75.0 178.0 1148.0 0 t 0 0 0 0 0 0 0 833.0 200.0 450.0 344.0 17761.0 702.0 1949.0 0

MA1541.2_shift0 (NR6A1)
; oligos_7nt_mkv5_m3 versus MA1541.2 (NR6A1); m=7/11; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score=0.492022; cAAGkTCAAGktCR- ; cor=; Ncor= a 124.0 896.0 896.0 13.0 19.0 1.0 7.0 896.0 896.0 21.0 29.0 91.0 39.0 896.0 0 c 896.0 4.0 91.0 9.0 12.0 74.0 896.0 0.0 96.0 15.0 11.0 185.0 896.0 20.0 0 g 342.0 44.0 72.0 896.0 443.0 26.0 29.0 2.0 35.0 896.0 524.0 355.0 109.0 359.0 0 t 132.0 11.0 51.0 62.0 453.0 896.0 40.0 14.0 65.0 62.0 373.0 896.0 254.0 41.0 0

MA1111.2_shift7 (NR2F2)
; oligos_7nt_mkv5_m3 versus MA1111.2 (NR2F2); m=8/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.484237; -------AAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1788.0 2084.0 37.0 33.0 17.0 30.0 2111.0 0 c 0 0 0 0 0 0 0 37.0 15.0 16.0 12.0 22.0 1978.0 16.0 0 g 0 0 0 0 0 0 0 173.0 82.0 2108.0 2132.0 30.0 26.0 43.0 0 t 0 0 0 0 0 0 0 206.0 23.0 43.0 27.0 2135.0 170.0 34.0 0

MA2336.1_shift7 (ZSCAN21)
; oligos_7nt_mkv5_m3 versus MA2336.1 (ZSCAN21); m=9/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.452596; -------AAGCACT- ; cor=; Ncor= a 0 0 0 0 0 0 0 703.0 896.0 28.0 17.0 893.0 25.0 37.0 0 c 0 0 0 0 0 0 0 124.0 16.0 25.0 744.0 21.0 881.0 9.0 0 g 0 0 0 0 0 0 0 55.0 25.0 853.0 32.0 22.0 30.0 16.0 0 t 0 0 0 0 0 0 0 65.0 10.0 41.0 154.0 11.0 11.0 885.0 0

MA2337.1_shift8 (Nr1h3)
; oligos_7nt_mkv5_m3 versus MA2337.1 (Nr1h3); m=10/11; ncol2=6; w=0; offset=4; strand=D; shift=8; score=0.422674; --------AGGkCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3796.0 0.0 2.0 10.0 5.0 3836.0 0 c 0 0 0 0 0 0 0 0 31.0 27.0 17.0 5.0 3851.0 6.0 0 g 0 0 0 0 0 0 0 0 35.0 3832.0 3839.0 1600.0 1.0 19.0 0 t 0 0 0 0 0 0 0 0 0.0 3.0 4.0 2247.0 5.0 1.0 0

MA1581.2_rc_shift2 (ZBTB6_rc)
; oligos_7nt_mkv5_m3 versus MA1581.2_rc (ZBTB6_rc); m=11/11; ncol2=9; w=-2; offset=-2; strand=R; shift=2; score=0.407037; --GGCTCAAGs---- ; cor=; Ncor= a 0 0 223.0 46.0 14.0 21.0 7.0 1566.0 2042.0 28.0 165.0 0 0 0 0 c 0 0 88.0 38.0 2135.0 20.0 2148.0 409.0 52.0 25.0 593.0 0 0 0 0 g 0 0 1814.0 2087.0 20.0 28.0 59.0 45.0 104.0 2080.0 1157.0 0 0 0 0 t 0 0 102.0 56.0 58.0 2158.0 13.0 207.0 29.0 94.0 312.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift4 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=4; ncol=15; ----twCAAGGACat ; Alignment reference a 0 0 0 0 508 626 66 1830 1898 55 48 1820 41 926 481 c 0 0 0 0 445 436 1804 83 61 27 46 52 1920 321 494 g 0 0 0 0 477 375 54 74 54 1914 1903 41 28 353 502 t 0 0 0 0 668 661 174 111 85 102 101 185 109 498 621
MA0141.4_shift5 (ESRRB)				; oligos_7nt_mkv5_m3 versus MA0141.4 (ESRRB); m=1/11; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.708446; -----TCAAGGTCAw ; cor=; Ncor= a 0 0 0 0 0 108.0 9.0 1746.0 1746.0 3.0 1.0 6.0 2.0 1746.0 702.0 c 0 0 0 0 0 373.0 1746.0 1.0 1.0 2.0 4.0 11.0 1746.0 0.0 256.0 g 0 0 0 0 0 75.0 255.0 0.0 3.0 1746.0 1746.0 8.0 1.0 56.0 42.0 t 0 0 0 0 0 1746.0 7.0 4.0 0.0 1.0 3.0 1746.0 15.0 3.0 1045.0
MA0505.3_rc_shift5 (Nr5A2_rc)				; oligos_7nt_mkv5_m3 versus MA0505.3_rc (Nr5A2_rc); m=2/11; ncol2=9; w=0; offset=1; strand=R; shift=5; score=0.684546; -----TCAAGGtCA- ; cor=; Ncor= a 0 0 0 0 0 1125.0 322.0 29653.0 29125.0 343.0 237.0 2733.0 483.0 21101.0 0 c 0 0 0 0 0 2402.0 29010.0 285.0 359.0 166.0 124.0 6736.0 27158.0 2303.0 0 g 0 0 0 0 0 645.0 870.0 338.0 694.0 29734.0 29854.0 1185.0 869.0 3118.0 0 t 0 0 0 0 0 26370.0 340.0 266.0 364.0 299.0 327.0 19888.0 2032.0 4020.0 0
MA0592.4_shift5 (ESRRA)				; oligos_7nt_mkv5_m3 versus MA0592.4 (ESRRA); m=3/11; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.655011; -----tCAAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 2305.0 972.0 24681.0 24744.0 480.0 223.0 1003.0 293.0 24648.0 0 c 0 0 0 0 0 6446.0 21854.0 355.0 415.0 340.0 146.0 379.0 23989.0 226.0 0 g 0 0 0 0 0 1850.0 2323.0 556.0 569.0 24676.0 25332.0 949.0 786.0 781.0 0 t 0 0 0 0 0 15394.0 846.0 403.0 267.0 499.0 294.0 23664.0 927.0 340.0 0
MA0643.2_shift5 (Esrrg)				; oligos_7nt_mkv5_m3 versus MA0643.2 (Esrrg); m=4/11; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.642545; -----tsAAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 3489.0 705.0 14909.0 14909.0 12.0 0.0 472.0 7.0 14909.0 0 c 0 0 0 0 0 5974.0 10009.0 0.0 12.0 7.0 17.0 41.0 14909.0 34.0 0 g 0 0 0 0 0 2800.0 4901.0 603.0 34.0 14909.0 14909.0 844.0 271.0 1561.0 0 t 0 0 0 0 0 14909.0 490.0 195.0 5.0 298.0 14.0 14909.0 1280.0 60.0 0
MA1540.3_shift2 (NR5A1)				; oligos_7nt_mkv5_m3 versus MA1540.3 (NR5A1); m=5/11; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.624489; --agtTCAAGGtCA- ; cor=; Ncor= a 0 0 2945.0 708.0 376.0 160.0 72.0 4287.0 4340.0 106.0 87.0 389.0 67.0 4201.0 0 c 0 0 398.0 558.0 747.0 564.0 4316.0 193.0 86.0 45.0 53.0 964.0 4271.0 144.0 0 g 0 0 633.0 2825.0 729.0 130.0 189.0 125.0 160.0 4461.0 4440.0 171.0 112.0 154.0 0 t 0 0 721.0 606.0 2845.0 3843.0 120.0 92.0 111.0 85.0 117.0 3173.0 247.0 198.0 0
MA2338.1_shift7 (Ppara)				; oligos_7nt_mkv5_m3 versus MA2338.1 (Ppara); m=6/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score= 0.4998; -------AAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 16299.0 17009.0 258.0 354.0 259.0 440.0 13045.0 0 c 0 0 0 0 0 0 0 258.0 641.0 446.0 68.0 83.0 16858.0 2036.0 0 g 0 0 0 0 0 0 0 788.0 328.0 17024.0 17412.0 75.0 178.0 1148.0 0 t 0 0 0 0 0 0 0 833.0 200.0 450.0 344.0 17761.0 702.0 1949.0 0
MA1541.2_shift0 (NR6A1)				; oligos_7nt_mkv5_m3 versus MA1541.2 (NR6A1); m=7/11; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score=0.492022; cAAGkTCAAGktCR- ; cor=; Ncor= a 124.0 896.0 896.0 13.0 19.0 1.0 7.0 896.0 896.0 21.0 29.0 91.0 39.0 896.0 0 c 896.0 4.0 91.0 9.0 12.0 74.0 896.0 0.0 96.0 15.0 11.0 185.0 896.0 20.0 0 g 342.0 44.0 72.0 896.0 443.0 26.0 29.0 2.0 35.0 896.0 524.0 355.0 109.0 359.0 0 t 132.0 11.0 51.0 62.0 453.0 896.0 40.0 14.0 65.0 62.0 373.0 896.0 254.0 41.0 0
MA1111.2_shift7 (NR2F2)				; oligos_7nt_mkv5_m3 versus MA1111.2 (NR2F2); m=8/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.484237; -------AAGGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1788.0 2084.0 37.0 33.0 17.0 30.0 2111.0 0 c 0 0 0 0 0 0 0 37.0 15.0 16.0 12.0 22.0 1978.0 16.0 0 g 0 0 0 0 0 0 0 173.0 82.0 2108.0 2132.0 30.0 26.0 43.0 0 t 0 0 0 0 0 0 0 206.0 23.0 43.0 27.0 2135.0 170.0 34.0 0
MA2336.1_shift7 (ZSCAN21)				; oligos_7nt_mkv5_m3 versus MA2336.1 (ZSCAN21); m=9/11; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.452596; -------AAGCACT- ; cor=; Ncor= a 0 0 0 0 0 0 0 703.0 896.0 28.0 17.0 893.0 25.0 37.0 0 c 0 0 0 0 0 0 0 124.0 16.0 25.0 744.0 21.0 881.0 9.0 0 g 0 0 0 0 0 0 0 55.0 25.0 853.0 32.0 22.0 30.0 16.0 0 t 0 0 0 0 0 0 0 65.0 10.0 41.0 154.0 11.0 11.0 885.0 0
MA2337.1_shift8 (Nr1h3)				; oligos_7nt_mkv5_m3 versus MA2337.1 (Nr1h3); m=10/11; ncol2=6; w=0; offset=4; strand=D; shift=8; score=0.422674; --------AGGkCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3796.0 0.0 2.0 10.0 5.0 3836.0 0 c 0 0 0 0 0 0 0 0 31.0 27.0 17.0 5.0 3851.0 6.0 0 g 0 0 0 0 0 0 0 0 35.0 3832.0 3839.0 1600.0 1.0 19.0 0 t 0 0 0 0 0 0 0 0 0.0 3.0 4.0 2247.0 5.0 1.0 0
MA1581.2_rc_shift2 (ZBTB6_rc)				; oligos_7nt_mkv5_m3 versus MA1581.2_rc (ZBTB6_rc); m=11/11; ncol2=9; w=-2; offset=-2; strand=R; shift=2; score=0.407037; --GGCTCAAGs---- ; cor=; Ncor= a 0 0 223.0 46.0 14.0 21.0 7.0 1566.0 2042.0 28.0 165.0 0 0 0 0 c 0 0 88.0 38.0 2135.0 20.0 2148.0 409.0 52.0 25.0 593.0 0 0 0 0 g 0 0 1814.0 2087.0 20.0 28.0 59.0 45.0 104.0 2080.0 1157.0 0 0 0 0 t 0 0 102.0 56.0 58.0 2158.0 13.0 207.0 29.0 94.0 312.0 0 0 0 0