| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m4_shift6 (oligos_7nt_mkv5_m4) |
 |
  |
  |
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=6; ncol=17; ------bsCGGCTGCsk
; Alignment reference
a 0 0 0 0 0 0 376 343 61 81 70 42 157 63 83 414 398
c 0 0 0 0 0 0 1071 1112 2778 244 514 2843 324 194 2692 1150 751
g 0 0 0 0 0 0 770 1139 118 2607 2340 92 347 2635 117 904 1082
t 0 0 0 0 0 0 791 414 51 76 84 31 2180 116 116 540 777
|
| MA0048.3_shift6 (NHLH1) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA0048.3 (NHLH1); m=1/14; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.60439; ------cGCAGCTGC--
; cor=; Ncor=
a 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 0 0
c 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 0 0
g 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 0 0
t 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 0 0
|
| MA1721.2_shift3 (ZNF93) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1721.2 (ZNF93); m=2/14; ncol2=14; w=-3; offset=-3; strand=D; shift=3; score=0.568427; ---gGyrkCrGCAGCGG
; cor=; Ncor=
a 0 0 0 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0
c 0 0 0 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0
g 0 0 0 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0
t 0 0 0 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0
|
| MA0500.3_shift7 (MYOG) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA0500.3 (MYOG); m=3/14; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.532783; -------rCAGCTGy--
; cor=; Ncor=
a 0 0 0 0 0 0 0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 0 0
c 0 0 0 0 0 0 0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 0 0
g 0 0 0 0 0 0 0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 0 0
t 0 0 0 0 0 0 0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 0 0
|
| MA1728.2_shift9 (ZNF549) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1728.2 (ZNF549); m=4/14; ncol2=8; w=0; offset=3; strand=D; shift=9; score=0.532689; ---------TGCTGCCC
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 483.0 72.0 50.0 229.0 28.0 55.0 106.0 183.0
c 0 0 0 0 0 0 0 0 0 349.0 161.0 4622.0 175.0 80.0 4364.0 4435.0 4133.0
g 0 0 0 0 0 0 0 0 0 498.0 4489.0 77.0 128.0 4566.0 177.0 98.0 75.0
t 0 0 0 0 0 0 0 0 0 3497.0 105.0 78.0 4295.0 153.0 231.0 188.0 436.0
|
| MA1100.3_shift7 (ASCL1) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1100.3 (ASCL1); m=5/14; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.520121; -------rCAGCTGc--
; cor=; Ncor=
a 0 0 0 0 0 0 0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 0 0
c 0 0 0 0 0 0 0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 0 0
g 0 0 0 0 0 0 0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 0 0
t 0 0 0 0 0 0 0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 0 0
|
| MA1529.2_shift3 (NHLH2) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1529.2 (NHLH2); m=6/14; ncol2=16; w=-3; offset=-3; strand=D; shift=3; score=0.48217; ---gGyMGCAGCTGCGy
; cor=; Ncor=
a 0 0 0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0
c 0 0 0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0
g 0 0 0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0
t 0 0 0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0
|
| MA0697.3_rc_shift7 (Zic3_rc) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA0697.3_rc (Zic3_rc); m=7/14; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.46931; -------CCTGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 532.0 967.0 858.0 792.0 266.0 596.0 334.0 0 0 0
c 0 0 0 0 0 0 0 24340.0 24314.0 1768.0 756.0 24907.0 759.0 460.0 0 0 0
g 0 0 0 0 0 0 0 955.0 500.0 568.0 24272.0 670.0 872.0 25035.0 0 0 0
t 0 0 0 0 0 0 0 347.0 393.0 22980.0 354.0 331.0 23947.0 345.0 0 0 0
|
| MA1628.2_rc_shift7 (Zic1::Zic2_rc) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1628.2_rc (Zic1::Zic2_rc); m=8/14; ncol2=7; w=0; offset=1; strand=R; shift=7; score=0.466685; -------CCTGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 0 0 0
c 0 0 0 0 0 0 0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 0 0 0
g 0 0 0 0 0 0 0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 0 0 0
t 0 0 0 0 0 0 0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 0 0 0
|
| MA1997.2_shift8 (Olig2) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1997.2 (Olig2); m=9/14; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.417324; --------CAGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 0 0 0
c 0 0 0 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 0 0 0
g 0 0 0 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 0 0 0
t 0 0 0 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0 0 0 0
|
| MA1938.2_rc_shift0 (ERF::NHLH1_rc) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1938.2_rc (ERF::NHLH1_rc); m=10/14; ncol2=16; w=-6; offset=-6; strand=R; shift=0; score=0.416239; ryWTCCGGCAGCTGCt-
; cor=; Ncor=
a 210.0 40.0 84.0 12.0 26.0 7.0 1.0 8.0 15.0 324.0 8.0 28.0 0.0 18.0 21.0 7.0 0
c 16.0 176.0 11.0 3.0 313.0 325.0 11.0 6.0 317.0 13.0 2.0 288.0 0.0 14.0 290.0 81.0 0
g 108.0 3.0 0.0 21.0 10.0 0.0 327.0 316.0 12.0 20.0 301.0 11.0 0.0 317.0 14.0 81.0 0
t 0.0 113.0 241.0 324.0 4.0 27.0 12.0 0.0 1.0 10.0 26.0 1.0 324.0 5.0 0.0 156.0 0
|
| MA1993.2_shift8 (Neurod2) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1993.2 (Neurod2); m=11/14; ncol2=6; w=0; offset=2; strand=D; shift=8; score= 0.416; --------CAGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 0 0 0
c 0 0 0 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 0 0 0
g 0 0 0 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 0 0 0
t 0 0 0 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0 0 0 0
|
| MA0633.3_shift8 (Twist2) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA0633.3 (Twist2); m=12/14; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.415902; --------CAGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 15.0 48915.0 9.0 21.0 0.0 60.0 0 0 0
c 0 0 0 0 0 0 0 0 49473.0 345.0 16.0 49583.0 369.0 81.0 0 0 0
g 0 0 0 0 0 0 0 0 81.0 369.0 49583.0 16.0 342.0 49473.0 0 0 0
t 0 0 0 0 0 0 0 0 60.0 0.0 21.0 9.0 48918.0 15.0 0 0 0
|
| MA1635.2_shift8 (BHLHE22) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA1635.2 (BHLHE22); m=13/14; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.414403; --------CAGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 0 0 0
c 0 0 0 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 0 0 0
g 0 0 0 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 0 0 0
t 0 0 0 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0 0 0 0
|
| MA0521.3_shift8 (Tcf12) |
 |
|
|
; oligos_7nt_mkv5_m4 versus MA0521.3 (Tcf12); m=14/14; ncol2=6; w=0; offset=2; strand=D; shift=8; score=0.412347; --------CAGCTG---
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 0 0 0
c 0 0 0 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 0 0 0
g 0 0 0 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 0 0 0
t 0 0 0 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0 0 0 0
|