/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.115003_2026-01-05.115003_UARk68/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
		file1	1	11	4391
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m5 MA0052.5 oligos_7nt_mkv5_m5 MEF2A 0.841 0.764 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv5_m5 MA2124.1 oligos_7nt_mkv5_m5 Hmga1 0.998 0.726 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m5 MA0773.1 oligos_7nt_mkv5_m5 MEF2D 0.745 0.683 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m5 MA0497.2 oligos_7nt_mkv5_m5 MEF2C 0.801 0.668 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_7nt_mkv5_m5 MA0660.1 oligos_7nt_mkv5_m5 MEF2B 0.727 0.666 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m5 MA1125.2 oligos_7nt_mkv5_m5 ZNF384 0.775 0.564 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv5_m5 MA0148.5 oligos_7nt_mkv5_m5 FOXA1 0.741 0.539 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m5 MA0108.3 oligos_7nt_mkv5_m5 TBP 0.835 0.531 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_7nt_mkv5_m5 MA1563.2 oligos_7nt_mkv5_m5 SOX18 0.728 0.529 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv5_m5 MA0047.4 oligos_7nt_mkv5_m5 FOXA2 0.721 0.524 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv5_m5 MA2118.1 oligos_7nt_mkv5_m5 FOXS1 0.712 0.518 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv5_m5 MA0613.1 oligos_7nt_mkv5_m5 FOXG1 0.704 0.512 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m5 MA0032.2 oligos_7nt_mkv5_m5 FOXC1 0.737 0.510 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m5 MA0845.1 oligos_7nt_mkv5_m5 FOXB1 0.714 0.495 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m5 MA0033.2 oligos_7nt_mkv5_m5 FOXL1 0.768 0.489 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0901.3 oligos_7nt_mkv5_m5 HOXB13 0.902 0.485 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA1606.2 oligos_7nt_mkv5_m5 Foxf1 0.756 0.481 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0913.3 oligos_7nt_mkv5_m5 HOXD9 0.879 0.473 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0899.2 oligos_7nt_mkv5_m5 HOXA10 0.873 0.470 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA1473.2 oligos_7nt_mkv5_m5 CDX4 0.871 0.469 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA1103.3 oligos_7nt_mkv5_m5 FOXK2 0.737 0.469 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0481.4 oligos_7nt_mkv5_m5 FOXP1 0.733 0.466 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0031.2 oligos_7nt_mkv5_m5 FOXD1 0.733 0.466 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0868.3 oligos_7nt_mkv5_m5 SOX8 0.732 0.466 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_7nt_mkv5_m5 MA0848.1 oligos_7nt_mkv5_m5 FOXO4 0.730 0.464 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA1683.2 oligos_7nt_mkv5_m5 FOXA3 0.730 0.464 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0042.2 oligos_7nt_mkv5_m5 FOXI1 0.729 0.464 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA2117.1 oligos_7nt_mkv5_m5 FOXP4 0.724 0.461 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0850.1 oligos_7nt_mkv5_m5 FOXP3 0.724 0.460 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0852.3 oligos_7nt_mkv5_m5 FOXK1 0.721 0.459 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0157.4 oligos_7nt_mkv5_m5 Foxo3 0.720 0.458 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0849.1 oligos_7nt_mkv5_m5 FOXO6 0.716 0.455 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0601.2 oligos_7nt_mkv5_m5 Arid3b 0.705 0.449 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv5_m5 MA0480.3 oligos_7nt_mkv5_m5 Foxo1 0.702 0.447 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m5 MA0878.3 oligos_7nt_mkv5_m5 CDX1 0.891 0.445 11 10 7 14 0.5000 0.6364 0.7000 R 4
oligos_7nt_mkv5_m5 MA0757.2 oligos_7nt_mkv5_m5 ONECUT3 0.828 0.442 11 12 8 15 0.5333 0.7273 0.6667 R -4
oligos_7nt_mkv5_m5 MA1607.2 oligos_7nt_mkv5_m5 Foxl2 0.711 0.438 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m5 MA0907.2 oligos_7nt_mkv5_m5 HOXC13 0.808 0.435 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0905.2 oligos_7nt_mkv5_m5 HOXC10 0.797 0.429 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0908.2 oligos_7nt_mkv5_m5 HOXD11 0.793 0.427 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0485.3 oligos_7nt_mkv5_m5 HOXC9 0.785 0.423 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA1503.2 oligos_7nt_mkv5_m5 HOXB9 0.775 0.417 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0909.4 oligos_7nt_mkv5_m5 Hoxd13 0.833 0.416 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv5_m5 MA0151.1 oligos_7nt_mkv5_m5 Arid3a 0.759 0.414 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv5_m5 MA0650.4 oligos_7nt_mkv5_m5 Hoxa13 0.894 0.413 11 8 6 13 0.4615 0.5455 0.7500 R 5
oligos_7nt_mkv5_m5 MA0911.2 oligos_7nt_mkv5_m5 Hoxa11 0.763 0.411 11 9 7 13 0.5385 0.6364 0.7778 R 4
oligos_7nt_mkv5_m5 MA0465.3 oligos_7nt_mkv5_m5 CDX2 0.879 0.406 11 8 6 13 0.4615 0.5455 0.7500 R 5 
 Host name	rsat
 Job started	2026-01-05.115246
 Job done	2026-01-05.115323
 Seconds	6.08
	user	6.08
	system	2.43
	cuser	25.25
;	csystem	2.58