compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files prefix $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html html_index $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab match_table_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_disco_compa.html Matrices file1 20 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 36465 file1 2 10 26616 file1 3 10 36854 file1 4 16 8830 file1 5 11 28585 file1 6 24 1805 file1 7 19 8039 file1 8 10 27063 file1 9 19 6086 file1 10 24 7584 file1 11 11 51084 ... 10 more matrices file2 20 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125020_2026-01-05.125020_w7RQpp/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 36465 file2 2 10 26616 file2 3 10 36854 file2 4 16 8830 file2 5 11 28585 file2 6 24 1805 file2 7 19 8039 file2 8 10 27063 file2 9 19 6086 file2 10 24 7584 file2 11 11 51084 ... 10 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m5 | positions_7nt_m5 | positions_7nt_m5 | positions_7nt_m5 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m3 | positions_7nt_m3 | positions_7nt_m3 | positions_7nt_m3 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m4 | positions_7nt_m4 | positions_7nt_m4 | positions_7nt_m4 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | 0.923 | 0.923 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | 0.923 | 0.923 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | 0.898 | 0.898 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | 0.898 | 0.898 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m3 | 0.835 | 0.835 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m1 | 0.835 | 0.835 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | 0.770 | 0.770 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | 0.770 | 0.770 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m4 | 0.845 | 0.705 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m3 | 0.845 | 0.705 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m1 | 0.825 | 0.688 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m3 | 0.825 | 0.688 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | 0.734 | 0.667 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | -1 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | 0.734 | 0.667 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 1 |
| positions_6nt_m5 | positions_7nt_m1 | positions_6nt_m5 | positions_7nt_m1 | 0.724 | 0.666 | 24 | 24 | 23 | 25 | 0.9200 | 0.9583 | 0.9583 | D | 1 |
| positions_7nt_m1 | positions_6nt_m5 | positions_7nt_m1 | positions_6nt_m5 | 0.724 | 0.666 | 24 | 24 | 23 | 25 | 0.9200 | 0.9583 | 0.9583 | D | -1 |
| oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m1 | 0.731 | 0.664 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m5 | 0.731 | 0.664 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | -1 |
| oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | 0.781 | 0.651 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | 0.781 | 0.651 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m3 | 0.712 | 0.647 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m5 | 0.712 | 0.647 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m2 | 0.746 | 0.622 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m3 | 0.746 | 0.622 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | R | -2 |
| positions_7nt_m3 | positions_6nt_m4 | positions_7nt_m3 | positions_6nt_m4 | 0.713 | 0.606 | 18 | 19 | 17 | 20 | 0.8500 | 0.9444 | 0.8947 | D | -2 |
| positions_6nt_m4 | positions_7nt_m3 | positions_6nt_m4 | positions_7nt_m3 | 0.713 | 0.606 | 19 | 18 | 17 | 20 | 0.8500 | 0.8947 | 0.9444 | D | 2 |
| oligos_7nt_mkv5_m4 | positions_7nt_m2 | oligos_7nt_mkv5_m4 | positions_7nt_m2 | 0.840 | 0.593 | 12 | 17 | 12 | 17 | 0.7059 | 1.0000 | 0.7059 | D | -1 |
| positions_7nt_m2 | oligos_7nt_mkv5_m4 | positions_7nt_m2 | oligos_7nt_mkv5_m4 | 0.840 | 0.593 | 17 | 12 | 12 | 17 | 0.7059 | 0.7059 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m1 | positions_6nt_m2 | oligos_7nt_mkv5_m1 | positions_6nt_m2 | 0.897 | 0.519 | 11 | 19 | 11 | 19 | 0.5789 | 1.0000 | 0.5789 | R | -7 |
| positions_6nt_m2 | oligos_7nt_mkv5_m1 | positions_6nt_m2 | oligos_7nt_mkv5_m1 | 0.897 | 0.519 | 19 | 11 | 11 | 19 | 0.5789 | 0.5789 | 1.0000 | R | 1 |
| positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | 0.763 | 0.498 | 19 | 19 | 15 | 23 | 0.6522 | 0.7895 | 0.7895 | D | 4 |
| positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | 0.763 | 0.498 | 19 | 19 | 15 | 23 | 0.6522 | 0.7895 | 0.7895 | D | -4 |
| positions_7nt_m2 | positions_6nt_m1 | positions_7nt_m2 | positions_6nt_m1 | 0.762 | 0.487 | 17 | 24 | 16 | 25 | 0.6400 | 0.9412 | 0.6667 | D | -8 |
| positions_6nt_m1 | positions_7nt_m2 | positions_6nt_m1 | positions_7nt_m2 | 0.762 | 0.487 | 24 | 17 | 16 | 25 | 0.6400 | 0.6667 | 0.9412 | D | 8 |
| oligos_6nt_mkv4_m3 | positions_7nt_m2 | oligos_6nt_mkv4_m3 | positions_7nt_m2 | 0.804 | 0.473 | 10 | 17 | 10 | 17 | 0.5882 | 1.0000 | 0.5882 | D | -1 |
| positions_7nt_m2 | oligos_6nt_mkv4_m3 | positions_7nt_m2 | oligos_6nt_mkv4_m3 | 0.804 | 0.473 | 17 | 10 | 10 | 17 | 0.5882 | 0.5882 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m4 | positions_6nt_m1 | oligos_7nt_mkv5_m4 | positions_6nt_m1 | 0.875 | 0.438 | 12 | 24 | 12 | 24 | 0.5000 | 1.0000 | 0.5000 | D | -12 |
| positions_6nt_m1 | oligos_7nt_mkv5_m4 | positions_6nt_m1 | oligos_7nt_mkv5_m4 | 0.875 | 0.438 | 24 | 12 | 12 | 24 | 0.5000 | 0.5000 | 1.0000 | D | 12 |
| positions_7nt_m1 | oligos_7nt_mkv5_m2 | positions_7nt_m1 | oligos_7nt_mkv5_m2 | 0.867 | 0.433 | 24 | 12 | 12 | 24 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
| oligos_7nt_mkv5_m2 | positions_7nt_m1 | oligos_7nt_mkv5_m2 | positions_7nt_m1 | 0.867 | 0.433 | 12 | 24 | 12 | 24 | 0.5000 | 1.0000 | 0.5000 | D | -4 |
| positions_6nt_m5 | oligos_7nt_mkv5_m2 | positions_6nt_m5 | oligos_7nt_mkv5_m2 | 0.856 | 0.428 | 24 | 12 | 12 | 24 | 0.5000 | 0.5000 | 1.0000 | D | 8 |
| oligos_7nt_mkv5_m2 | positions_6nt_m5 | oligos_7nt_mkv5_m2 | positions_6nt_m5 | 0.856 | 0.428 | 12 | 24 | 12 | 24 | 0.5000 | 1.0000 | 0.5000 | D | -8 |
| oligos_7nt_mkv5_m3 | positions_7nt_m1 | oligos_7nt_mkv5_m3 | positions_7nt_m1 | 0.841 | 0.420 | 12 | 24 | 12 | 24 | 0.5000 | 1.0000 | 0.5000 | D | -4 |
| positions_7nt_m1 | oligos_7nt_mkv5_m3 | positions_7nt_m1 | oligos_7nt_mkv5_m3 | 0.841 | 0.420 | 24 | 12 | 12 | 24 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
| positions_7nt_m4 | positions_7nt_m2 | positions_7nt_m4 | positions_7nt_m2 | 0.707 | 0.408 | 24 | 17 | 15 | 26 | 0.5769 | 0.6250 | 0.8824 | R | -2 |
| positions_7nt_m2 | positions_7nt_m4 | positions_7nt_m2 | positions_7nt_m4 | 0.707 | 0.408 | 17 | 24 | 15 | 26 | 0.5769 | 0.8824 | 0.6250 | R | -9 |
Host name rsat Job started 2026-01-05.130448 Job done 2026-01-05.130551 Seconds 11.43 user 11.43 system 2.91 cuser 44.19 ; csystem 4.19