position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Asterocyte -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 15751 Sum of sequence lengths 13528226 Min sequence length 0 Max sequence length 1000 Average sequence length 858 Possible positions 13528226 Oligonucleotide statistics: Total occurrences 13121996 Position interval parameters: Position interval 20 Number of windows 50 Total positions 13528226 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 82 1027 2 -24 [-479,-460] -469.5 1927 12917 3 -23 [-459,-440] -449.5 7665 100974 4 -22 [-439,-420] -429.5 11570 199119 5 -21 [-419,-400] -409.5 13512 254259 6 -20 [-399,-380] -389.5 14427 281013 7 -19 [-379,-360] -369.5 14907 294261 8 -18 [-359,-340] -349.5 15186 301520 9 -17 [-339,-320] -329.5 15351 305655 10 -16 [-319,-300] -309.5 15472 308465 11 -15 [-299,-280] -289.5 15555 310282 12 -14 [-279,-260] -269.5 15610 311670 13 -13 [-259,-240] -249.5 15663 312812 14 -12 [-239,-220] -229.5 15700 313737 15 -11 [-219,-200] -209.5 15727 314354 16 -10 [-199,-180] -189.5 15743 314749 17 -9 [-179,-160] -169.5 15749 314918 18 -8 [-159,-140] -149.5 15751 315020 19 -7 [-139,-120] -129.5 15751 315020 20 -6 [-119,-100] -109.5 15751 315020 21 -5 [-99,-80] -89.5 15751 315020 22 -4 [-79,-60] -69.5 15751 315020 23 -3 [-59,-40] -49.5 15751 315020 24 -2 [-39,-20] -29.5 15751 315020 25 -1 [-19,0] -9.5 15751 315020 26 0 [1,20] 10.5 15751 315020 27 1 [21,40] 30.5 15751 315020 28 2 [41,60] 50.5 15751 315020 29 3 [61,80] 70.5 15751 315020 30 4 [81,100] 90.5 15751 315020 31 5 [101,120] 110.5 15751 315020 32 6 [121,140] 130.5 15751 315020 33 7 [141,160] 150.5 15751 315019 34 8 [161,180] 170.5 15749 314912 35 9 [181,200] 190.5 15743 314733 36 10 [201,220] 210.5 15726 314333 37 11 [221,240] 230.5 15697 313702 38 12 [241,260] 250.5 15658 312756 39 13 [261,280] 270.5 15607 311615 40 14 [281,300] 290.5 15550 310208 41 15 [301,320] 310.5 15468 308342 42 16 [321,340] 330.5 15345 305509 43 17 [341,360] 350.5 15177 301246 44 18 [361,380] 370.5 14890 293782 45 19 [381,400] 390.5 14397 280104 46 20 [401,420] 410.5 13446 252342 47 21 [421,440] 430.5 11437 195342 48 22 [441,460] 450.5 7392 95237 49 23 [461,480] 470.5 1667 11037 50 24 [481,500] 490.5 76 975 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 3371606 | 14964.7 | 49 | 0.0e+00 | 0 | 300 | 1 | 196 | 2891 | 22328 | 44133 | 56743 | 63810 | 67266 | 69715 | 71278 | 72902 | 73898 | 74850 | 76468 | 77728 | 78815 | 80208 | 81057 | 81675 | 82536 | 83358 | 83588 | 84761 | 84436 | 85194 | 85802 | 84844 | 85436 | 85645 | 85208 | 84557 | 83571 | 83165 | 81965 | 81510 | 80088 | 79096 | 77740 | 76542 | 75661 | 74332 | 72959 | 71520 | 69463 | 66562 | 63239 | 55967 | 43019 | 21187 | 2503 | 191 |
| c | c | 3368041 | 14327.3 | 49 | 0.0e+00 | 0 | 300 | 2 | 197 | 2928 | 22488 | 44557 | 56930 | 63185 | 67300 | 69758 | 71957 | 72488 | 74118 | 75681 | 76819 | 77700 | 79054 | 79992 | 81190 | 82040 | 82547 | 83122 | 83734 | 84491 | 85268 | 85542 | 85350 | 85732 | 84714 | 84332 | 84463 | 83836 | 83083 | 82602 | 81380 | 80571 | 80114 | 78547 | 77955 | 76788 | 75145 | 74121 | 72620 | 71293 | 69230 | 67332 | 63052 | 55959 | 43124 | 21026 | 2416 | 170 |
| a | a | 3188572 | 3847.6 | 49 | 0.0e+00 | 0 | 300 | 3 | 284 | 3286 | 25453 | 49774 | 63074 | 69306 | 72256 | 73593 | 74537 | 75431 | 75471 | 75306 | 75032 | 75255 | 74811 | 74210 | 73448 | 73322 | 72605 | 71729 | 71107 | 70723 | 70468 | 69554 | 70273 | 70841 | 70975 | 70820 | 70901 | 71406 | 71963 | 72171 | 72774 | 73249 | 73286 | 74202 | 74365 | 74740 | 74938 | 74453 | 74576 | 73724 | 72619 | 71200 | 68429 | 61802 | 48190 | 23668 | 2720 | 252 |
| t | t | 3193777 | 3719.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 298 | 3302 | 25629 | 49520 | 62575 | 68510 | 71627 | 73103 | 73700 | 74466 | 74591 | 74797 | 74673 | 74228 | 74112 | 73842 | 73511 | 72904 | 72712 | 72361 | 72416 | 71201 | 71177 | 71131 | 70265 | 70444 | 70552 | 70681 | 70675 | 71183 | 71768 | 72088 | 73297 | 73168 | 74183 | 74986 | 75420 | 75237 | 75229 | 75482 | 75087 | 74645 | 74145 | 71884 | 68426 | 62513 | 48973 | 24012 | 2800 | 248 |
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