position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Asterocyte -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 15751 Sum of sequence lengths 13528226 Min sequence length 0 Max sequence length 1000 Average sequence length 858 Possible positions 13512475 Oligonucleotide statistics: Total occurrences 13102997 Position interval parameters: Position interval 20 Number of windows 50 Total positions 13512475 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 82 1027 2 -24 [-479,-460] -469.5 1927 12917 3 -23 [-459,-440] -449.5 7665 100974 4 -22 [-439,-420] -429.5 11570 199119 5 -21 [-419,-400] -409.5 13512 254259 6 -20 [-399,-380] -389.5 14427 281013 7 -19 [-379,-360] -369.5 14907 294261 8 -18 [-359,-340] -349.5 15186 301520 9 -17 [-339,-320] -329.5 15351 305655 10 -16 [-319,-300] -309.5 15472 308465 11 -15 [-299,-280] -289.5 15555 310282 12 -14 [-279,-260] -269.5 15610 311670 13 -13 [-259,-240] -249.5 15663 312812 14 -12 [-239,-220] -229.5 15700 313737 15 -11 [-219,-200] -209.5 15727 314354 16 -10 [-199,-180] -189.5 15743 314749 17 -9 [-179,-160] -169.5 15749 314918 18 -8 [-159,-140] -149.5 15751 315020 19 -7 [-139,-120] -129.5 15751 315020 20 -6 [-119,-100] -109.5 15751 315020 21 -5 [-99,-80] -89.5 15751 315020 22 -4 [-79,-60] -69.5 15751 315020 23 -3 [-59,-40] -49.5 15751 315020 24 -2 [-39,-20] -29.5 15751 315020 25 -1 [-19,0] -9.5 15751 315020 26 0 [1,20] 10.5 15751 315020 27 1 [21,40] 30.5 15751 315020 28 2 [41,60] 50.5 15751 315020 29 3 [61,80] 70.5 15751 315020 30 4 [81,100] 90.5 15751 315020 31 5 [101,120] 110.5 15751 315020 32 6 [121,140] 130.5 15751 315020 33 7 [141,160] 150.5 15751 315017 34 8 [161,180] 170.5 15749 314906 35 9 [181,200] 190.5 15742 314716 36 10 [201,220] 210.5 15726 314304 37 11 [221,240] 230.5 15697 313663 38 12 [241,260] 250.5 15658 312705 39 13 [261,280] 270.5 15605 311558 40 14 [281,300] 290.5 15546 310126 41 15 [301,320] 310.5 15467 308219 42 16 [321,340] 330.5 15342 305341 43 17 [341,360] 350.5 15175 300959 44 18 [361,380] 370.5 14883 293289 45 19 [381,400] 390.5 14377 279153 46 20 [401,420] 410.5 13408 250333 47 21 [421,440] 430.5 11365 191297 48 22 [441,460] 450.5 7265 89512 49 23 [461,480] 470.5 1559 9446 50 24 [481,500] 490.5 70 899 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| gc | gc | 909542 | 22606.3 | 49 | 0.0e+00 | 0 | 300 | 1 | 35 | 648 | 5133 | 10232 | 13353 | 15209 | 15929 | 17131 | 17614 | 17769 | 18644 | 18970 | 19839 | 20505 | 20904 | 21663 | 22135 | 22960 | 23524 | 24310 | 24924 | 25302 | 25781 | 26485 | 26327 | 26293 | 26428 | 25867 | 25306 | 24971 | 24317 | 23891 | 22943 | 22213 | 21492 | 20893 | 20432 | 19871 | 19216 | 18772 | 18034 | 17661 | 16785 | 15914 | 14915 | 13054 | 9804 | 4622 | 486 | 36 |
| cg | cg | 353018 | 15295.7 | 49 | 0.0e+00 | 0 | 300 | 2 | 6 | 212 | 1626 | 3335 | 4462 | 5277 | 5803 | 6207 | 6531 | 6593 | 7003 | 7223 | 7692 | 7968 | 8271 | 8787 | 8973 | 9232 | 9474 | 9766 | 10047 | 10409 | 10528 | 10554 | 10580 | 10629 | 10524 | 10412 | 10327 | 10151 | 9889 | 9754 | 9257 | 9014 | 8608 | 8202 | 7910 | 7622 | 7418 | 7028 | 6834 | 6444 | 6239 | 5733 | 5154 | 4514 | 3192 | 1430 | 170 | 4 |
| ta | ta | 496789 | 11286.4 | 49 | 0.0e+00 | 0 | 300 | 3 | 67 | 619 | 4845 | 9075 | 11279 | 12443 | 12671 | 12849 | 12894 | 12813 | 12537 | 12194 | 12134 | 11840 | 11516 | 11240 | 10706 | 10632 | 10368 | 9849 | 9742 | 9443 | 9158 | 8936 | 9038 | 9168 | 9134 | 9221 | 9334 | 9661 | 9967 | 10238 | 10686 | 10883 | 11249 | 11576 | 11856 | 12209 | 12304 | 12558 | 12695 | 12844 | 12879 | 12597 | 12198 | 11242 | 8811 | 4097 | 441 | 53 |
| at | at | 640571 | 7612.8 | 49 | 0.0e+00 | 0 | 300 | 4 | 81 | 770 | 5818 | 11196 | 14025 | 15379 | 15676 | 15866 | 15956 | 15860 | 15836 | 15513 | 15429 | 15120 | 14880 | 14518 | 14069 | 13892 | 13678 | 13405 | 13198 | 12840 | 12916 | 12559 | 12523 | 12763 | 12751 | 12791 | 13000 | 13146 | 13485 | 13614 | 14077 | 14286 | 14451 | 14836 | 15045 | 15340 | 15725 | 15760 | 15734 | 15854 | 15864 | 15730 | 14952 | 13876 | 10764 | 5132 | 529 | 63 |
| gg | gg | 1042019 | 7113.9 | 49 | 0.0e+00 | 0 | 300 | 5 | 51 | 883 | 6519 | 13140 | 16769 | 19096 | 20322 | 21081 | 21794 | 22277 | 22544 | 23055 | 23687 | 23912 | 24420 | 25157 | 25350 | 25368 | 25828 | 25826 | 25854 | 26725 | 26173 | 26647 | 26875 | 26269 | 26618 | 26862 | 27151 | 26710 | 26445 | 26174 | 25895 | 25832 | 25366 | 24883 | 24231 | 23610 | 23296 | 22955 | 22546 | 21763 | 21078 | 20103 | 19181 | 16710 | 12486 | 5818 | 633 | 51 |
| cc | cc | 1040021 | 6514.7 | 49 | 0.0e+00 | 0 | 300 | 6 | 48 | 837 | 6775 | 13440 | 16975 | 18938 | 20466 | 21180 | 22262 | 22541 | 22868 | 23448 | 24059 | 24152 | 24810 | 25067 | 25675 | 26098 | 26068 | 25983 | 26112 | 26200 | 26556 | 26765 | 26673 | 26644 | 26153 | 26021 | 26373 | 26142 | 25946 | 25792 | 25233 | 25307 | 25201 | 24446 | 24141 | 23754 | 23050 | 22723 | 22013 | 21602 | 20831 | 20488 | 18953 | 16457 | 12214 | 5881 | 618 | 42 |
| aa | aa | 922451 | 4857.1 | 49 | 0.0e+00 | 0 | 300 | 7 | 87 | 1010 | 7696 | 15359 | 19364 | 21054 | 21746 | 22348 | 22390 | 22775 | 22515 | 22471 | 22203 | 22018 | 21750 | 21560 | 20934 | 21150 | 20343 | 20067 | 19807 | 19466 | 19395 | 18954 | 19128 | 19537 | 19563 | 19300 | 19242 | 19635 | 20134 | 20150 | 20500 | 20724 | 20841 | 21642 | 21549 | 21704 | 22026 | 21851 | 22359 | 21872 | 21723 | 21417 | 20844 | 18604 | 14140 | 6675 | 744 | 85 |
| tt | tt | 926560 | 4741.2 | 49 | 0.0e+00 | 0 | 300 | 8 | 104 | 972 | 7874 | 14991 | 18917 | 20428 | 21628 | 21759 | 21981 | 22081 | 22184 | 22098 | 21671 | 21639 | 21240 | 21153 | 21000 | 20463 | 20584 | 20236 | 20304 | 19485 | 19584 | 19807 | 19196 | 19144 | 19556 | 19453 | 19589 | 19766 | 19967 | 20380 | 20816 | 20826 | 21507 | 22009 | 22320 | 22313 | 22521 | 22831 | 22678 | 22493 | 22565 | 21749 | 20836 | 19309 | 14811 | 6941 | 729 | 72 |
| ct | ct | 1008971 | 1727.8 | 49 | 0.0e+00 | 0 | 300 | 9 | 77 | 951 | 7103 | 13996 | 17867 | 19443 | 20583 | 21437 | 21793 | 21970 | 22392 | 22886 | 22933 | 23123 | 23523 | 23823 | 23873 | 24118 | 24172 | 24572 | 24731 | 24857 | 24852 | 25029 | 24754 | 25015 | 24645 | 24621 | 24314 | 24484 | 24341 | 24168 | 24189 | 23750 | 24082 | 23765 | 23472 | 23325 | 22740 | 22737 | 22445 | 22178 | 21453 | 20782 | 19644 | 17448 | 13524 | 6273 | 669 | 49 |
| ag | ag | 1008567 | 1638.7 | 49 | 0.0e+00 | 0 | 300 | 10 | 73 | 903 | 7162 | 13975 | 17891 | 19978 | 21107 | 21610 | 21918 | 22477 | 22790 | 22984 | 23192 | 23674 | 23881 | 23857 | 24255 | 24193 | 24510 | 24331 | 24327 | 24612 | 24219 | 24404 | 24978 | 24499 | 25049 | 24917 | 24562 | 24654 | 24273 | 24119 | 23958 | 23939 | 23530 | 23390 | 23302 | 23258 | 22851 | 22449 | 22204 | 21823 | 21163 | 20397 | 19482 | 17162 | 13311 | 6246 | 675 | 53 |
| tg | tg | 963591 | 775.1 | 49 | 0.0e+00 | 0 | 300 | 11 | 67 | 895 | 6978 | 13702 | 17710 | 19384 | 20003 | 20863 | 20959 | 21569 | 21565 | 21597 | 22017 | 22167 | 22283 | 22403 | 22625 | 22747 | 22919 | 23260 | 23336 | 23184 | 23395 | 23617 | 23336 | 23416 | 23368 | 23452 | 23057 | 23007 | 22991 | 22984 | 22830 | 22643 | 22522 | 22560 | 22243 | 22014 | 21994 | 21691 | 21476 | 21259 | 20856 | 20200 | 19110 | 17019 | 13265 | 6316 | 676 | 61 |
| ca | ca | 961517 | 657.8 | 49 | 0.0e+00 | 0 | 300 | 12 | 64 | 924 | 6967 | 13754 | 17590 | 19505 | 20426 | 20912 | 21357 | 21355 | 21841 | 22110 | 22120 | 22437 | 22442 | 22302 | 22660 | 22583 | 22824 | 22790 | 22837 | 23012 | 23319 | 23181 | 23331 | 23438 | 23382 | 23264 | 23438 | 23041 | 22891 | 22871 | 22677 | 22480 | 22202 | 22104 | 22400 | 22029 | 21884 | 21584 | 21256 | 20992 | 20582 | 20162 | 19043 | 17098 | 13220 | 6159 | 617 | 60 |
| gt | gt | 612550 | 327.7 | 49 | 7.0e-43 | 1.1e-41 | 40.95 | 13 | 40 | 601 | 4761 | 9299 | 11706 | 13137 | 13753 | 13880 | 14111 | 14354 | 14194 | 14313 | 14423 | 14347 | 14420 | 14389 | 14488 | 14310 | 14191 | 14206 | 14137 | 13926 | 13897 | 13600 | 13755 | 13604 | 13565 | 13837 | 13737 | 13806 | 13910 | 14045 | 14206 | 14312 | 14178 | 14397 | 14416 | 14355 | 14286 | 14130 | 14174 | 14037 | 14115 | 13480 | 12761 | 11429 | 8854 | 4185 | 452 | 41 |
| ac | ac | 612026 | 296.9 | 49 | 3.4e-37 | 5.5e-36 | 35.26 | 14 | 43 | 598 | 4747 | 9204 | 11767 | 12871 | 13697 | 13740 | 14251 | 14294 | 14309 | 14315 | 14186 | 14435 | 14281 | 14264 | 14174 | 14072 | 14063 | 13913 | 13767 | 13791 | 13925 | 13629 | 13637 | 14028 | 13604 | 13795 | 14083 | 13956 | 14052 | 14271 | 14216 | 14272 | 14439 | 14305 | 14426 | 14387 | 14285 | 14340 | 14210 | 14091 | 13754 | 13494 | 12881 | 11608 | 8961 | 4167 | 398 | 30 |
| ga | ga | 802899 | 226.4 | 49 | 1.3e-24 | 2e-23 | 22.69 | 15 | 70 | 756 | 5899 | 11432 | 14875 | 16331 | 17234 | 17595 | 17737 | 18475 | 18499 | 18497 | 18504 | 18957 | 19057 | 18986 | 19070 | 19028 | 18977 | 19000 | 18662 | 18796 | 18568 | 18451 | 18835 | 18662 | 18811 | 19064 | 19000 | 19060 | 18878 | 19035 | 18893 | 19122 | 19017 | 18894 | 18626 | 18677 | 18809 | 18414 | 18141 | 17977 | 17372 | 16894 | 16123 | 14289 | 10992 | 5267 | 549 | 42 |
| tc | tc | 801905 | 194.9 | 49 | 2.7e-19 | 4.3e-18 | 17.36 | 16 | 60 | 813 | 5906 | 11716 | 14643 | 16223 | 17292 | 17605 | 17846 | 17978 | 18288 | 18887 | 18825 | 18567 | 19059 | 19030 | 19171 | 19048 | 18829 | 19005 | 19027 | 19079 | 19028 | 18765 | 18686 | 18704 | 18484 | 18543 | 18681 | 18739 | 18827 | 18474 | 18946 | 18793 | 18884 | 18804 | 18963 | 18665 | 18369 | 18350 | 18173 | 17968 | 17747 | 17185 | 16019 | 14390 | 11059 | 5184 | 530 | 48 |
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