compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf Output files match_table_txt $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html prefix $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf file1 1 16 8830 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m4 | MA1979.2 | oligos_6nt_mkv4_m4 | ZNF416 | 0.901 | 0.477 | 16 | 10 | 9 | 17 | 0.5294 | 0.5625 | 0.9000 | D | -1 |
| oligos_6nt_mkv4_m4 | MA0599.1 | oligos_6nt_mkv4_m4 | KLF5 | 0.759 | 0.474 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| oligos_6nt_mkv4_m4 | MA2328.1 | oligos_6nt_mkv4_m4 | ZBED4 | 0.752 | 0.470 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 6 |
| oligos_6nt_mkv4_m4 | MA0597.3 | oligos_6nt_mkv4_m4 | THAP1 | 0.935 | 0.467 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 6 |
| oligos_6nt_mkv4_m4 | MA0742.2 | oligos_6nt_mkv4_m4 | KLF12 | 0.801 | 0.451 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA0740.2 | oligos_6nt_mkv4_m4 | KLF14 | 0.800 | 0.450 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA0685.2 | oligos_6nt_mkv4_m4 | SP4 | 0.788 | 0.443 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA1511.2 | oligos_6nt_mkv4_m4 | KLF10 | 0.767 | 0.432 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA0516.3 | oligos_6nt_mkv4_m4 | SP2 | 0.760 | 0.427 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA1513.2 | oligos_6nt_mkv4_m4 | KLF15 | 0.845 | 0.422 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | R | 4 |
| oligos_6nt_mkv4_m4 | MA0079.5 | oligos_6nt_mkv4_m4 | SP1 | 0.735 | 0.414 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m4 | MA1959.2 | oligos_6nt_mkv4_m4 | KLF7 | 0.827 | 0.413 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
| oligos_6nt_mkv4_m4 | MA2125.1 | oligos_6nt_mkv4_m4 | Zfp809 | 0.724 | 0.407 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m4 | MA0493.3 | oligos_6nt_mkv4_m4 | KLF1 | 0.807 | 0.404 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
Host name rsat Job started 2026-01-05.131140 Job done 2026-01-05.131144 Seconds 0.82 user 0.83 system 0.15 cuser 2.82 ; csystem 0.42