One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift1 ; 15 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)    
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=16; shift=1; ncol=17; -ssCtGGGCaGGGCass
; Alignment reference
a	0	1487	1329	301	711	204	419	324	435	5875	299	426	415	511	4441	1191	1602
c	0	2788	2612	7584	1001	530	653	562	7570	1059	504	595	388	7306	1482	2673	2255
g	0	3118	3383	722	1240	7798	7309	7721	635	1084	7754	7491	7786	717	1897	3729	3561
t	0	1437	1506	223	5878	298	449	223	190	812	273	318	241	296	1010	1237	1412
MA1979.2_shift0 (ZNF416)
; oligos_6nt_mkv4_m4 versus MA1979.2 (ZNF416); m=1/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.477111; TaTCTGGGCa-------
; cor=; Ncor=
a	47.0	197.0	48.0	1.0	2.0	1.0	2.0	0.0	4.0	212.0	0	0	0	0	0	0	0
c	32.0	25.0	28.0	334.0	6.0	7.0	5.0	1.0	320.0	38.0	0	0	0	0	0	0	0
g	26.0	77.0	15.0	7.0	1.0	335.0	335.0	341.0	3.0	29.0	0	0	0	0	0	0	0
t	240.0	46.0	254.0	3.0	336.0	2.0	3.0	3.0	18.0	66.0	0	0	0	0	0	0	0
MA0599.1_rc_shift4 (KLF5_rc)
; oligos_6nt_mkv4_m4 versus MA0599.1_rc (KLF5_rc); m=2/14; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.474488; ----dGGGyGKGGc---
; cor=; Ncor=
a	0	0	0	0	4101.0	476.0	0.0	0.0	3378.0	0.0	565.0	1603.0	1711.0	2587.0	0	0	0
c	0	0	0	0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	7572.0	0	0	0
g	0	0	0	0	5595.0	13135.0	13611.0	13611.0	0.0	13611.0	9569.0	12008.0	11900.0	2023.0	0	0	0
t	0	0	0	0	3915.0	0.0	0.0	0.0	5051.0	0.0	3477.0	0.0	0.0	1429.0	0	0	0
MA2328.1_rc_shift7 (ZBED4_rc)
; oligos_6nt_mkv4_m4 versus MA2328.1_rc (ZBED4_rc); m=3/14; ncol2=10; w=0; offset=6; strand=R; shift=7; score=0.470035; -------GCGGrGCGgG
; cor=; Ncor=
a	0	0	0	0	0	0	0	17.0	39.0	21.0	14.0	230.0	7.0	21.0	20.0	150.0	60.0
c	0	0	0	0	0	0	0	35.0	580.0	23.0	34.0	28.0	26.0	608.0	62.0	65.0	80.0
g	0	0	0	0	0	0	0	589.0	19.0	604.0	598.0	391.0	621.0	14.0	549.0	419.0	479.0
t	0	0	0	0	0	0	0	19.0	22.0	12.0	14.0	11.0	6.0	17.0	29.0	26.0	41.0
MA0597.3_shift7 (THAP1)
; oligos_6nt_mkv4_m4 versus MA0597.3 (THAP1); m=4/14; ncol2=8; w=0; offset=6; strand=D; shift=7; score=0.467395; -------gcAGGGCA--
; cor=; Ncor=
a	0	0	0	0	0	0	0	477.0	553.0	4731.0	22.0	40.0	91.0	98.0	4900.0	0	0
c	0	0	0	0	0	0	0	966.0	3351.0	219.0	127.0	183.0	67.0	4861.0	95.0	0	0
g	0	0	0	0	0	0	0	3186.0	933.0	220.0	4958.0	4893.0	4942.0	104.0	172.0	0	0
t	0	0	0	0	0	0	0	549.0	341.0	8.0	71.0	62.0	78.0	115.0	11.0	0	0
MA0742.2_shift4 (KLF12)
; oligos_6nt_mkv4_m4 versus MA0742.2 (KLF12); m=5/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.450788; ----GGGGCGGGG----
; cor=; Ncor=
a	0	0	0	0	101.948	86.3636	0.649351	0.649351	47.4026	0.649351	5.84416	68.1818	0.649351	0	0	0	0
c	0	0	0	0	0.649351	0.649351	0.649351	0.649351	951.299	0.649351	78.5714	0.649351	0.649351	0	0	0	0
g	0	0	0	0	709.74	912.338	998.052	998.052	0.649351	998.052	725.325	930.519	969.481	0	0	0	0
t	0	0	0	0	187.662	0.649351	0.649351	0.649351	0.649351	0.649351	190.26	0.649351	29.2208	0	0	0	0
MA0740.2_shift4 (KLF14)
; oligos_6nt_mkv4_m4 versus MA0740.2 (KLF14); m=6/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.45016; ----kGGGCGKGG----
; cor=; Ncor=
a	0	0	0	0	31.158	0.635877	0.635877	0.635877	94.9046	0.635877	0.635877	107.705	198.614	0	0	0	0
c	0	0	0	0	0.635877	0.635877	0.635877	0.635877	814.392	0.635877	0.635877	0.635877	62.0884	0	0	0	0
g	0	0	0	0	619.525	998.092	998.092	998.092	0.635877	998.092	717.898	891.023	738.662	0	0	0	0
t	0	0	0	0	348.681	0.635877	0.635877	0.635877	90.067	0.635877	280.83	0.635877	0.635877	0	0	0	0
MA0685.2_shift4 (SP4)
; oligos_6nt_mkv4_m4 versus MA0685.2 (SP4); m=7/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.443194; ----gGGGMGGrG----
; cor=; Ncor=
a	0	0	0	0	149.038	0.686813	0.686813	0.686813	275.412	0.686813	0.686813	289.148	0.686813	0	0	0	0
c	0	0	0	0	0.686813	0.686813	0.686813	0.686813	723.214	0.686813	0.686813	0.686813	0.686813	0	0	0	0
g	0	0	0	0	654.533	997.94	997.94	997.94	0.686813	997.94	921.016	660.027	997.94	0	0	0	0
t	0	0	0	0	195.742	0.686813	0.686813	0.686813	0.686813	0.686813	77.6099	50.1374	0.686813	0	0	0	0
MA1511.2_shift4 (KLF10)
; oligos_6nt_mkv4_m4 versus MA1511.2 (KLF10); m=8/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.431645; ----GGGGCGKGG----
; cor=; Ncor=
a	0	0	0	0	75.2427	0.809061	0.809061	0.809061	42.8803	0.809061	0.809061	65.534	65.534	0	0	0	0
c	0	0	0	0	0.809061	0.809061	0.809061	0.809061	803.398	0.809061	52.589	0.809061	0.809061	0	0	0	0
g	0	0	0	0	819.579	997.573	997.573	997.573	0.809061	997.573	693.366	906.958	884.304	0	0	0	0
t	0	0	0	0	104.369	0.809061	0.809061	0.809061	152.913	0.809061	253.236	26.699	49.3528	0	0	0	0
MA0516.3_shift4 (SP2)
; oligos_6nt_mkv4_m4 versus MA0516.3 (SP2); m=9/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.427293; ----GGGGCGGGg----
; cor=; Ncor=
a	0	0	0	0	153.226	167.889	0.733138	0.733138	112.17	0.733138	0.733138	120.968	206.012	0	0	0	0
c	0	0	0	0	0.733138	0.733138	0.733138	0.733138	886.364	0.733138	0.733138	0.733138	164.956	0	0	0	0
g	0	0	0	0	766.129	830.645	997.801	997.801	0.733138	997.801	974.34	877.566	610.704	0	0	0	0
t	0	0	0	0	79.912	0.733138	0.733138	0.733138	0.733138	0.733138	24.1935	0.733138	18.3284	0	0	0	0
MA1513.2_rc_shift5 (KLF15_rc)
; oligos_6nt_mkv4_m4 versus MA1513.2_rc (KLF15_rc); m=10/14; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.422258; -----GGGCGGGg----
; cor=; Ncor=
a	0	0	0	0	0	3.0	1.0	11.0	0.0	0.0	3.0	9.0	1809.0	0	0	0	0
c	0	0	0	0	0	100.0	359.0	2.0	11369.0	1.0	333.0	86.0	2117.0	0	0	0	0
g	0	0	0	0	0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0	11234.0	6506.0	0	0	0	0
t	0	0	0	0	0	12.0	55.0	11.0	0.0	0.0	93.0	40.0	937.0	0	0	0	0
MA0079.5_shift4 (SP1)
; oligos_6nt_mkv4_m4 versus MA0079.5 (SP1); m=11/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.413526; ----GGGGMGGrG----
; cor=; Ncor=
a	0	0	0	0	1.05485	1.05485	1.05485	1.05485	266.878	1.05485	1.05485	254.219	161.392	0	0	0	0
c	0	0	0	0	1.05485	1.05485	1.05485	1.05485	731.013	1.05485	85.443	51.6878	1.05485	0	0	0	0
g	0	0	0	0	950.422	996.835	996.835	996.835	1.05485	996.835	912.447	659.283	836.498	0	0	0	0
t	0	0	0	0	47.4684	1.05485	1.05485	1.05485	1.05485	1.05485	1.05485	34.8101	1.05485	0	0	0	0
MA1959.2_shift5 (KLF7)
; oligos_6nt_mkv4_m4 versus MA1959.2 (KLF7); m=12/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.413264; -----GGGCGKgG----
; cor=; Ncor=
a	0	0	0	0	0	1.0	1.0	1.0	45.0	1.0	1.0	150.0	1.0	0	0	0	0
c	0	0	0	0	0	1.0	1.0	1.0	788.0	1.0	25.0	42.0	1.0	0	0	0	0
g	0	0	0	0	0	997.0	997.0	997.0	1.0	997.0	720.0	642.0	997.0	0	0	0	0
t	0	0	0	0	0	1.0	1.0	1.0	167.0	1.0	254.0	167.0	1.0	0	0	0	0
MA2125.1_rc_shift1 (Zfp809_rc)
; oligos_6nt_mkv4_m4 versus MA2125.1_rc (Zfp809_rc); m=13/14; ncol2=9; w=0; offset=0; strand=R; shift=1; score=0.40711; -gGCTGGGAw-------
; cor=; Ncor=
a	0	242.0	61.0	26.0	37.0	18.0	21.0	25.0	1578.0	690.0	0	0	0	0	0	0	0
c	0	115.0	99.0	1572.0	73.0	16.0	14.0	18.0	23.0	81.0	0	0	0	0	0	0	0
g	0	1091.0	1218.0	35.0	26.0	1621.0	1610.0	1607.0	41.0	66.0	0	0	0	0	0	0	0
t	0	217.0	287.0	32.0	1529.0	10.0	20.0	15.0	23.0	828.0	0	0	0	0	0	0	0
MA0493.3_shift5 (KLF1)
; oligos_6nt_mkv4_m4 versus MA0493.3 (KLF1); m=14/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.403702; -----GGGyGkGG----
; cor=; Ncor=
a	0	0	0	0	0	1.0	1.0	1.0	125.0	1.0	1.0	82.0	1.0	0	0	0	0
c	0	0	0	0	0	1.0	1.0	1.0	529.0	1.0	1.0	1.0	1.0	0	0	0	0
g	0	0	0	0	0	998.0	998.0	998.0	1.0	998.0	675.0	896.0	998.0	0	0	0	0
t	0	0	0	0	0	1.0	1.0	1.0	346.0	1.0	324.0	21.0	1.0	0	0	0	0