One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m5/peak-motifs_oligos_6nt_mkv4_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_6nt_mkv4_m5/peak-motifs_oligos_6nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; ssCGGAGCGss ; Alignment reference a 4147 4438 1172 1364 367 21283 250 1459 1420 4414 4612 c 10528 8928 24624 1253 1638 3017 484 25020 3468 9858 8095 g 9825 11285 1860 24938 26377 3567 27654 1289 21877 10412 11854 t 4085 3934 929 1030 203 718 197 817 1820 3901 4024

MA2328.1_rc_shift1 (ZBED4_rc)
; oligos_6nt_mkv4_m5 versus MA2328.1_rc (ZBED4_rc); m=1/10; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.803779; -GCGGrGCGgG ; cor=; Ncor= a 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0

MA1713.2_rc_shift3 (ZNF610_rc)
; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=2/10; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.546507; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0

MA0079.5_shift3 (SP1)
; oligos_6nt_mkv4_m5 versus MA0079.5 (SP1); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.508049; ---GGGGMGGr ; cor=; Ncor= a 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 c 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 g 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 t 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101

MA1511.2_shift3 (KLF10)
; oligos_6nt_mkv4_m5 versus MA1511.2 (KLF10); m=4/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.505353; ---GGGGCGKG ; cor=; Ncor= a 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 c 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 g 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 t 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699

MA0742.2_shift3 (KLF12)
; oligos_6nt_mkv4_m5 versus MA0742.2 (KLF12); m=5/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.500732; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 c 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 g 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 t 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351

MA0516.3_shift3 (SP2)
; oligos_6nt_mkv4_m5 versus MA0516.3 (SP2); m=6/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484759; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 c 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 g 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 t 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138

MA0740.2_shift3 (KLF14)
; oligos_6nt_mkv4_m5 versus MA0740.2 (KLF14); m=7/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484072; ---kGGGCGKG ; cor=; Ncor= a 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 c 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 g 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 t 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877

MA0685.2_shift3 (SP4)
; oligos_6nt_mkv4_m5 versus MA0685.2 (SP4); m=8/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.480706; ---gGGGMGGr ; cor=; Ncor= a 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 c 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 g 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 t 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374

MA1959.2_shift4 (KLF7)
; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=9/10; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.429877; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0

MA1513.2_rc_shift4 (KLF15_rc)
; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=10/10; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.429673; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; ssCGGAGCGss ; Alignment reference a 4147 4438 1172 1364 367 21283 250 1459 1420 4414 4612 c 10528 8928 24624 1253 1638 3017 484 25020 3468 9858 8095 g 9825 11285 1860 24938 26377 3567 27654 1289 21877 10412 11854 t 4085 3934 929 1030 203 718 197 817 1820 3901 4024
MA2328.1_rc_shift1 (ZBED4_rc)				; oligos_6nt_mkv4_m5 versus MA2328.1_rc (ZBED4_rc); m=1/10; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.803779; -GCGGrGCGgG ; cor=; Ncor= a 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0
MA1713.2_rc_shift3 (ZNF610_rc)				; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=2/10; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.546507; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0
MA0079.5_shift3 (SP1)				; oligos_6nt_mkv4_m5 versus MA0079.5 (SP1); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.508049; ---GGGGMGGr ; cor=; Ncor= a 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 c 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 g 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 t 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101
MA1511.2_shift3 (KLF10)				; oligos_6nt_mkv4_m5 versus MA1511.2 (KLF10); m=4/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.505353; ---GGGGCGKG ; cor=; Ncor= a 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 c 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 g 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 t 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699
MA0742.2_shift3 (KLF12)				; oligos_6nt_mkv4_m5 versus MA0742.2 (KLF12); m=5/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.500732; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 c 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 g 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 t 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351
MA0516.3_shift3 (SP2)				; oligos_6nt_mkv4_m5 versus MA0516.3 (SP2); m=6/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484759; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 c 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 g 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 t 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138
MA0740.2_shift3 (KLF14)				; oligos_6nt_mkv4_m5 versus MA0740.2 (KLF14); m=7/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484072; ---kGGGCGKG ; cor=; Ncor= a 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 c 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 g 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 t 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877
MA0685.2_shift3 (SP4)				; oligos_6nt_mkv4_m5 versus MA0685.2 (SP4); m=8/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.480706; ---gGGGMGGr ; cor=; Ncor= a 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 c 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 g 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 t 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374
MA1959.2_shift4 (KLF7)				; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=9/10; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.429877; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0
MA1513.2_rc_shift4 (KLF15_rc)				; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=10/10; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.429673; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0