One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift4 ; 47 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wtATTTTTAww ; Alignment reference a 0 0 0 0 14257 12595 44664 2652 3292 2079 3039 4231 44303 16467 17323 c 0 0 0 0 7692 10974 1930 1691 1606 1549 2434 2302 1972 8249 9121 g 0 0 0 0 10772 8367 2187 1880 1831 1128 1899 1548 1846 9367 7532 t 0 0 0 0 18363 19148 2303 44861 44355 46328 43712 43003 2963 17001 17108

MA0052.5_rc_shift4 (MEF2A_rc)
; oligos_7nt_mkv5_m1 versus MA0052.5_rc (MEF2A_rc); m=1/46; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.780703; ----CTATTTTTAg- ; cor=; Ncor= a 0 0 0 0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 0 c 0 0 0 0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 0 g 0 0 0 0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 0 t 0 0 0 0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 0

MA2124.1_shift6 (Hmga1)
; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=2/46; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.725245; ------ATTTTTAw- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0

MA0773.1_rc_shift3 (MEF2D_rc)
; oligos_7nt_mkv5_m1 versus MA0773.1_rc (MEF2D_rc); m=3/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.700558; ---kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0

MA0497.2_rc_shift3 (MEF2C_rc)
; oligos_7nt_mkv5_m1 versus MA0497.2_rc (MEF2C_rc); m=4/46; ncol2=11; w=-1; offset=-1; strand=R; shift=3; score=0.683648; ---kCTATTTTTrg- ; cor=; Ncor= a 0 0 0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 0 c 0 0 0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 0 g 0 0 0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 0 t 0 0 0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 0

MA0660.1_rc_shift3 (MEF2B_rc)
; oligos_7nt_mkv5_m1 versus MA0660.1_rc (MEF2B_rc); m=5/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.682548; ---kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0

MA1125.2_rc_shift4 (ZNF384_rc)
; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=6/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.558678; ----ttTTTTTT--- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0

MA0148.5_rc_shift6 (FOXA1_rc)
; oligos_7nt_mkv5_m1 versus MA0148.5_rc (FOXA1_rc); m=7/46; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.537241; ------ATGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 0 c 0 0 0 0 0 0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 0 g 0 0 0 0 0 0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 0 t 0 0 0 0 0 0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 0

MA0108.3_rc_shift8 (TBP_rc)
; oligos_7nt_mkv5_m1 versus MA0108.3_rc (TBP_rc); m=8/46; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.531171; --------wTWTATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 121.0 6.0 121.0 30.0 374.0 35.0 309.0 c 0 0 0 0 0 0 0 0 44.0 20.0 0.0 5.0 2.0 2.0 18.0 g 0 0 0 0 0 0 0 0 2.0 3.0 0.0 0.0 10.0 0.0 46.0 t 0 0 0 0 0 0 0 0 222.0 360.0 268.0 354.0 3.0 352.0 16.0

MA1563.2_rc_shift4 (SOX18_rc)
; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=9/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.527056; ----bhATTGTt--- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0

MA0047.4_rc_shift7 (FOXA2_rc)
; oligos_7nt_mkv5_m1 versus MA0047.4_rc (FOXA2_rc); m=10/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.523683; -------TGTTTACw ; cor=; Ncor= a 0 0 0 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 c 0 0 0 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 g 0 0 0 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 t 0 0 0 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0

MA2118.1_rc_shift7 (FOXS1_rc)
; oligos_7nt_mkv5_m1 versus MA2118.1_rc (FOXS1_rc); m=11/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.517049; -------TGTTTACa ; cor=; Ncor= a 0 0 0 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 c 0 0 0 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 g 0 0 0 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 t 0 0 0 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0

MA0032.2_rc_shift6 (FOXC1_rc)
; oligos_7nt_mkv5_m1 versus MA0032.2_rc (FOXC1_rc); m=12/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.511243; ------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0

MA0845.1_rc_shift6 (FOXB1_rc)
; oligos_7nt_mkv5_m1 versus MA0845.1_rc (FOXB1_rc); m=13/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.49745; ------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0

MA0033.2_rc_shift7 (FOXL1_rc)
; oligos_7nt_mkv5_m1 versus MA0033.2_rc (FOXL1_rc); m=14/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.487399; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0

MA0901.3_rc_shift8 (HOXB13_rc)
; oligos_7nt_mkv5_m1 versus MA0901.3_rc (HOXB13_rc); m=15/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.484683; --------TTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 0 0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 0 0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 0 0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0

MA1606.2_rc_shift7 (Foxf1_rc)
; oligos_7nt_mkv5_m1 versus MA1606.2_rc (Foxf1_rc); m=16/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.478886; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 c 0 0 0 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 g 0 0 0 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 t 0 0 0 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0

MA0913.3_rc_shift8 (HOXD9_rc)
; oligos_7nt_mkv5_m1 versus MA0913.3_rc (HOXD9_rc); m=17/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.47261; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0

MA0899.2_rc_shift8 (HOXA10_rc)
; oligos_7nt_mkv5_m1 versus MA0899.2_rc (HOXA10_rc); m=18/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.468723; --------tTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0

MA1103.3_rc_shift7 (FOXK2_rc)
; oligos_7nt_mkv5_m1 versus MA1103.3_rc (FOXK2_rc); m=19/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.467094; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 c 0 0 0 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 g 0 0 0 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 t 0 0 0 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0

MA1473.2_rc_shift8 (CDX4_rc)
; oligos_7nt_mkv5_m1 versus MA1473.2_rc (CDX4_rc); m=20/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.46642; --------tTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0

MA0481.4_rc_shift7 (FOXP1_rc)
; oligos_7nt_mkv5_m1 versus MA0481.4_rc (FOXP1_rc); m=21/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464603; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 c 0 0 0 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 g 0 0 0 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 t 0 0 0 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0

MA0868.3_rc_shift5 (SOX8_rc)
; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=22/46; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.464153; -----yATTGTT--- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0

MA0031.2_rc_shift7 (FOXD1_rc)
; oligos_7nt_mkv5_m1 versus MA0031.2_rc (FOXD1_rc); m=23/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464036; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0

MA0848.1_rc_shift7 (FOXO4_rc)
; oligos_7nt_mkv5_m1 versus MA0848.1_rc (FOXO4_rc); m=24/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.463267; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0

MA0042.2_rc_shift7 (FOXI1_rc)
; oligos_7nt_mkv5_m1 versus MA0042.2_rc (FOXI1_rc); m=25/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462816; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0

MA1683.2_rc_shift7 (FOXA3_rc)
; oligos_7nt_mkv5_m1 versus MA1683.2_rc (FOXA3_rc); m=26/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462789; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 c 0 0 0 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 g 0 0 0 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 t 0 0 0 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0

MA2117.1_rc_shift7 (FOXP4_rc)
; oligos_7nt_mkv5_m1 versus MA2117.1_rc (FOXP4_rc); m=27/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.459429; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 c 0 0 0 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 g 0 0 0 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 t 0 0 0 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0

MA0852.3_rc_shift7 (FOXK1_rc)
; oligos_7nt_mkv5_m1 versus MA0852.3_rc (FOXK1_rc); m=28/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456679; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 c 0 0 0 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 g 0 0 0 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 t 0 0 0 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0

MA0850.1_rc_shift7 (FOXP3_rc)
; oligos_7nt_mkv5_m1 versus MA0850.1_rc (FOXP3_rc); m=29/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456436; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0

MA0157.4_rc_shift7 (Foxo3_rc)
; oligos_7nt_mkv5_m1 versus MA0157.4_rc (Foxo3_rc); m=30/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456047; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 c 0 0 0 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 g 0 0 0 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 t 0 0 0 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0

MA0849.1_rc_shift7 (FOXO6_rc)
; oligos_7nt_mkv5_m1 versus MA0849.1_rc (FOXO6_rc); m=31/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.453778; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0

MA0601.2_shift8 (Arid3b)
; oligos_7nt_mkv5_m1 versus MA0601.2 (Arid3b); m=32/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447254; --------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0

MA0619.2_shift8 (LIN54)
; oligos_7nt_mkv5_m1 versus MA0619.2 (LIN54); m=33/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447239; --------TTTrAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 c 0 0 0 0 0 0 0 0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 999.0 999.0 788.0 0.0 0.0 0.0 685.0

MA0878.3_rc_shift8 (CDX1_rc)
; oligos_7nt_mkv5_m1 versus MA0878.3_rc (CDX1_rc); m=34/46; ncol2=10; w=0; offset=4; strand=R; shift=8; score=0.443001; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 854.0 0.0 29.0 230.0 8617.0 0.0 355.0 c 0 0 0 0 0 0 0 0 754.0 0.0 97.0 0.0 0.0 344.0 0.0 g 0 0 0 0 0 0 0 0 1418.0 0.0 72.0 56.0 0.0 0.0 3795.0 t 0 0 0 0 0 0 0 0 7199.0 8617.0 8617.0 8617.0 0.0 8617.0 4822.0

MA0757.2_rc_shift0 (ONECUT3_rc)
; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=35/46; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.441202; tTATyGATTTTt--- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0

MA1607.2_rc_shift7 (Foxl2_rc)
; oligos_7nt_mkv5_m1 versus MA1607.2_rc (Foxl2_rc); m=36/46; ncol2=10; w=0; offset=3; strand=R; shift=7; score=0.436214; -------TGTTTACA ; cor=; Ncor= a 0 0 0 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 c 0 0 0 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 g 0 0 0 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 t 0 0 0 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0

MA0907.2_rc_shift8 (HOXC13_rc)
; oligos_7nt_mkv5_m1 versus MA0907.2_rc (HOXC13_rc); m=37/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.433776; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0

MA0905.2_rc_shift8 (HOXC10_rc)
; oligos_7nt_mkv5_m1 versus MA0905.2_rc (HOXC10_rc); m=38/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.427605; --------tTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0

MA0908.2_rc_shift8 (HOXD11_rc)
; oligos_7nt_mkv5_m1 versus MA0908.2_rc (HOXD11_rc); m=39/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.42637; --------tTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 230.0 230.0 230.0 175.0 8.0 68.0 16.0

MA0485.3_rc_shift8 (HOXC9_rc)
; oligos_7nt_mkv5_m1 versus MA0485.3_rc (HOXC9_rc); m=40/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.420922; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0

MA0151.1_rc_shift9 (Arid3a_rc)
; oligos_7nt_mkv5_m1 versus MA0151.1_rc (Arid3a_rc); m=41/46; ncol2=6; w=0; offset=5; strand=R; shift=9; score=0.415824; ---------TTTrAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0

MA1503.2_rc_shift8 (HOXB9_rc)
; oligos_7nt_mkv5_m1 versus MA1503.2_rc (HOXB9_rc); m=42/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.415501; --------tTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0

MA0909.4_rc_shift9 (Hoxd13_rc)
; oligos_7nt_mkv5_m1 versus MA0909.4_rc (Hoxd13_rc); m=43/46; ncol2=7; w=0; offset=5; strand=R; shift=9; score=0.412869; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 c 0 0 0 0 0 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 g 0 0 0 0 0 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 t 0 0 0 0 0 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0

MA0650.4_rc_shift9 (Hoxa13_rc)
; oligos_7nt_mkv5_m1 versus MA0650.4_rc (Hoxa13_rc); m=44/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.411922; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 247.0 212.0 832.0 16662.0 929.0 1439.0 c 0 0 0 0 0 0 0 0 0 145.0 98.0 407.0 232.0 666.0 146.0 g 0 0 0 0 0 0 0 0 0 306.0 125.0 205.0 249.0 243.0 1594.0 t 0 0 0 0 0 0 0 0 0 16550.0 16813.0 15804.0 105.0 15410.0 14069.0

MA0911.2_rc_shift8 (Hoxa11_rc)
; oligos_7nt_mkv5_m1 versus MA0911.2_rc (Hoxa11_rc); m=45/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.410005; --------tTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 0 704.0 704.0 704.0 489.0 14.0 250.0 30.0

MA0465.3_rc_shift9 (CDX2_rc)
; oligos_7nt_mkv5_m1 versus MA0465.3_rc (CDX2_rc); m=46/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.404557; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 804.0 666.0 1045.0 30975.0 459.0 1810.0 c 0 0 0 0 0 0 0 0 0 502.0 366.0 999.0 386.0 1196.0 184.0 g 0 0 0 0 0 0 0 0 0 595.0 349.0 761.0 391.0 414.0 3312.0 t 0 0 0 0 0 0 0 0 0 30125.0 30645.0 29221.0 274.0 29957.0 26720.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wtATTTTTAww ; Alignment reference a 0 0 0 0 14257 12595 44664 2652 3292 2079 3039 4231 44303 16467 17323 c 0 0 0 0 7692 10974 1930 1691 1606 1549 2434 2302 1972 8249 9121 g 0 0 0 0 10772 8367 2187 1880 1831 1128 1899 1548 1846 9367 7532 t 0 0 0 0 18363 19148 2303 44861 44355 46328 43712 43003 2963 17001 17108
MA0052.5_rc_shift4 (MEF2A_rc)				; oligos_7nt_mkv5_m1 versus MA0052.5_rc (MEF2A_rc); m=1/46; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.780703; ----CTATTTTTAg- ; cor=; Ncor= a 0 0 0 0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 0 c 0 0 0 0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 0 g 0 0 0 0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 0 t 0 0 0 0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 0
MA2124.1_shift6 (Hmga1)				; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=2/46; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.725245; ------ATTTTTAw- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0
MA0773.1_rc_shift3 (MEF2D_rc)				; oligos_7nt_mkv5_m1 versus MA0773.1_rc (MEF2D_rc); m=3/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.700558; ---kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0
MA0497.2_rc_shift3 (MEF2C_rc)				; oligos_7nt_mkv5_m1 versus MA0497.2_rc (MEF2C_rc); m=4/46; ncol2=11; w=-1; offset=-1; strand=R; shift=3; score=0.683648; ---kCTATTTTTrg- ; cor=; Ncor= a 0 0 0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 0 c 0 0 0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 0 g 0 0 0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 0 t 0 0 0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 0
MA0660.1_rc_shift3 (MEF2B_rc)				; oligos_7nt_mkv5_m1 versus MA0660.1_rc (MEF2B_rc); m=5/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.682548; ---kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0
MA1125.2_rc_shift4 (ZNF384_rc)				; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=6/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.558678; ----ttTTTTTT--- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0
MA0148.5_rc_shift6 (FOXA1_rc)				; oligos_7nt_mkv5_m1 versus MA0148.5_rc (FOXA1_rc); m=7/46; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.537241; ------ATGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 0 c 0 0 0 0 0 0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 0 g 0 0 0 0 0 0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 0 t 0 0 0 0 0 0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 0
MA0108.3_rc_shift8 (TBP_rc)				; oligos_7nt_mkv5_m1 versus MA0108.3_rc (TBP_rc); m=8/46; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.531171; --------wTWTATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 121.0 6.0 121.0 30.0 374.0 35.0 309.0 c 0 0 0 0 0 0 0 0 44.0 20.0 0.0 5.0 2.0 2.0 18.0 g 0 0 0 0 0 0 0 0 2.0 3.0 0.0 0.0 10.0 0.0 46.0 t 0 0 0 0 0 0 0 0 222.0 360.0 268.0 354.0 3.0 352.0 16.0
MA1563.2_rc_shift4 (SOX18_rc)				; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=9/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.527056; ----bhATTGTt--- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0
MA0047.4_rc_shift7 (FOXA2_rc)				; oligos_7nt_mkv5_m1 versus MA0047.4_rc (FOXA2_rc); m=10/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.523683; -------TGTTTACw ; cor=; Ncor= a 0 0 0 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 c 0 0 0 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 g 0 0 0 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 t 0 0 0 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0
MA2118.1_rc_shift7 (FOXS1_rc)				; oligos_7nt_mkv5_m1 versus MA2118.1_rc (FOXS1_rc); m=11/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.517049; -------TGTTTACa ; cor=; Ncor= a 0 0 0 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 c 0 0 0 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 g 0 0 0 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 t 0 0 0 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0
MA0032.2_rc_shift6 (FOXC1_rc)				; oligos_7nt_mkv5_m1 versus MA0032.2_rc (FOXC1_rc); m=12/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.511243; ------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0
MA0845.1_rc_shift6 (FOXB1_rc)				; oligos_7nt_mkv5_m1 versus MA0845.1_rc (FOXB1_rc); m=13/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.49745; ------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0
MA0033.2_rc_shift7 (FOXL1_rc)				; oligos_7nt_mkv5_m1 versus MA0033.2_rc (FOXL1_rc); m=14/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.487399; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0
MA0901.3_rc_shift8 (HOXB13_rc)				; oligos_7nt_mkv5_m1 versus MA0901.3_rc (HOXB13_rc); m=15/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.484683; --------TTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 0 0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 0 0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 0 0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0
MA1606.2_rc_shift7 (Foxf1_rc)				; oligos_7nt_mkv5_m1 versus MA1606.2_rc (Foxf1_rc); m=16/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.478886; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 c 0 0 0 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 g 0 0 0 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 t 0 0 0 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0
MA0913.3_rc_shift8 (HOXD9_rc)				; oligos_7nt_mkv5_m1 versus MA0913.3_rc (HOXD9_rc); m=17/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.47261; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0
MA0899.2_rc_shift8 (HOXA10_rc)				; oligos_7nt_mkv5_m1 versus MA0899.2_rc (HOXA10_rc); m=18/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.468723; --------tTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0
MA1103.3_rc_shift7 (FOXK2_rc)				; oligos_7nt_mkv5_m1 versus MA1103.3_rc (FOXK2_rc); m=19/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.467094; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 c 0 0 0 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 g 0 0 0 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 t 0 0 0 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0
MA1473.2_rc_shift8 (CDX4_rc)				; oligos_7nt_mkv5_m1 versus MA1473.2_rc (CDX4_rc); m=20/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.46642; --------tTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0
MA0481.4_rc_shift7 (FOXP1_rc)				; oligos_7nt_mkv5_m1 versus MA0481.4_rc (FOXP1_rc); m=21/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464603; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 c 0 0 0 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 g 0 0 0 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 t 0 0 0 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0
MA0868.3_rc_shift5 (SOX8_rc)				; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=22/46; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.464153; -----yATTGTT--- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0
MA0031.2_rc_shift7 (FOXD1_rc)				; oligos_7nt_mkv5_m1 versus MA0031.2_rc (FOXD1_rc); m=23/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464036; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0
MA0848.1_rc_shift7 (FOXO4_rc)				; oligos_7nt_mkv5_m1 versus MA0848.1_rc (FOXO4_rc); m=24/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.463267; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0
MA0042.2_rc_shift7 (FOXI1_rc)				; oligos_7nt_mkv5_m1 versus MA0042.2_rc (FOXI1_rc); m=25/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462816; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0
MA1683.2_rc_shift7 (FOXA3_rc)				; oligos_7nt_mkv5_m1 versus MA1683.2_rc (FOXA3_rc); m=26/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462789; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 c 0 0 0 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 g 0 0 0 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 t 0 0 0 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0
MA2117.1_rc_shift7 (FOXP4_rc)				; oligos_7nt_mkv5_m1 versus MA2117.1_rc (FOXP4_rc); m=27/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.459429; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 c 0 0 0 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 g 0 0 0 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 t 0 0 0 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0
MA0852.3_rc_shift7 (FOXK1_rc)				; oligos_7nt_mkv5_m1 versus MA0852.3_rc (FOXK1_rc); m=28/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456679; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 c 0 0 0 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 g 0 0 0 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 t 0 0 0 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0
MA0850.1_rc_shift7 (FOXP3_rc)				; oligos_7nt_mkv5_m1 versus MA0850.1_rc (FOXP3_rc); m=29/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456436; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0
MA0157.4_rc_shift7 (Foxo3_rc)				; oligos_7nt_mkv5_m1 versus MA0157.4_rc (Foxo3_rc); m=30/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456047; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 c 0 0 0 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 g 0 0 0 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 t 0 0 0 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0
MA0849.1_rc_shift7 (FOXO6_rc)				; oligos_7nt_mkv5_m1 versus MA0849.1_rc (FOXO6_rc); m=31/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.453778; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0
MA0601.2_shift8 (Arid3b)				; oligos_7nt_mkv5_m1 versus MA0601.2 (Arid3b); m=32/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447254; --------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0
MA0619.2_shift8 (LIN54)				; oligos_7nt_mkv5_m1 versus MA0619.2 (LIN54); m=33/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447239; --------TTTrAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 c 0 0 0 0 0 0 0 0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 999.0 999.0 788.0 0.0 0.0 0.0 685.0
MA0878.3_rc_shift8 (CDX1_rc)				; oligos_7nt_mkv5_m1 versus MA0878.3_rc (CDX1_rc); m=34/46; ncol2=10; w=0; offset=4; strand=R; shift=8; score=0.443001; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 854.0 0.0 29.0 230.0 8617.0 0.0 355.0 c 0 0 0 0 0 0 0 0 754.0 0.0 97.0 0.0 0.0 344.0 0.0 g 0 0 0 0 0 0 0 0 1418.0 0.0 72.0 56.0 0.0 0.0 3795.0 t 0 0 0 0 0 0 0 0 7199.0 8617.0 8617.0 8617.0 0.0 8617.0 4822.0
MA0757.2_rc_shift0 (ONECUT3_rc)				; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=35/46; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.441202; tTATyGATTTTt--- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0
MA1607.2_rc_shift7 (Foxl2_rc)				; oligos_7nt_mkv5_m1 versus MA1607.2_rc (Foxl2_rc); m=36/46; ncol2=10; w=0; offset=3; strand=R; shift=7; score=0.436214; -------TGTTTACA ; cor=; Ncor= a 0 0 0 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 c 0 0 0 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 g 0 0 0 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 t 0 0 0 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0
MA0907.2_rc_shift8 (HOXC13_rc)				; oligos_7nt_mkv5_m1 versus MA0907.2_rc (HOXC13_rc); m=37/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.433776; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0
MA0905.2_rc_shift8 (HOXC10_rc)				; oligos_7nt_mkv5_m1 versus MA0905.2_rc (HOXC10_rc); m=38/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.427605; --------tTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0
MA0908.2_rc_shift8 (HOXD11_rc)				; oligos_7nt_mkv5_m1 versus MA0908.2_rc (HOXD11_rc); m=39/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.42637; --------tTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 230.0 230.0 230.0 175.0 8.0 68.0 16.0
MA0485.3_rc_shift8 (HOXC9_rc)				; oligos_7nt_mkv5_m1 versus MA0485.3_rc (HOXC9_rc); m=40/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.420922; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0
MA0151.1_rc_shift9 (Arid3a_rc)				; oligos_7nt_mkv5_m1 versus MA0151.1_rc (Arid3a_rc); m=41/46; ncol2=6; w=0; offset=5; strand=R; shift=9; score=0.415824; ---------TTTrAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0
MA1503.2_rc_shift8 (HOXB9_rc)				; oligos_7nt_mkv5_m1 versus MA1503.2_rc (HOXB9_rc); m=42/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.415501; --------tTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0
MA0909.4_rc_shift9 (Hoxd13_rc)				; oligos_7nt_mkv5_m1 versus MA0909.4_rc (Hoxd13_rc); m=43/46; ncol2=7; w=0; offset=5; strand=R; shift=9; score=0.412869; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 c 0 0 0 0 0 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 g 0 0 0 0 0 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 t 0 0 0 0 0 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0
MA0650.4_rc_shift9 (Hoxa13_rc)				; oligos_7nt_mkv5_m1 versus MA0650.4_rc (Hoxa13_rc); m=44/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.411922; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 247.0 212.0 832.0 16662.0 929.0 1439.0 c 0 0 0 0 0 0 0 0 0 145.0 98.0 407.0 232.0 666.0 146.0 g 0 0 0 0 0 0 0 0 0 306.0 125.0 205.0 249.0 243.0 1594.0 t 0 0 0 0 0 0 0 0 0 16550.0 16813.0 15804.0 105.0 15410.0 14069.0
MA0911.2_rc_shift8 (Hoxa11_rc)				; oligos_7nt_mkv5_m1 versus MA0911.2_rc (Hoxa11_rc); m=45/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.410005; --------tTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 0 704.0 704.0 704.0 489.0 14.0 250.0 30.0
MA0465.3_rc_shift9 (CDX2_rc)				; oligos_7nt_mkv5_m1 versus MA0465.3_rc (CDX2_rc); m=46/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.404557; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 804.0 666.0 1045.0 30975.0 459.0 1810.0 c 0 0 0 0 0 0 0 0 0 502.0 366.0 999.0 386.0 1196.0 184.0 g 0 0 0 0 0 0 0 0 0 595.0 349.0 761.0 391.0 414.0 3312.0 t 0 0 0 0 0 0 0 0 0 30125.0 30645.0 29221.0 274.0 29957.0 26720.0