/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
		file1	1	12	36946
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m2 MA0732.2 oligos_7nt_mkv5_m2 EGR3 0.788 0.723 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m2 MA0733.2 oligos_7nt_mkv5_m2 EGR4 0.777 0.713 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m2 MA0162.5 oligos_7nt_mkv5_m2 EGR1 0.831 0.693 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv5_m2 MA0472.2 oligos_7nt_mkv5_m2 EGR2 0.741 0.679 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m2 MA1627.2 oligos_7nt_mkv5_m2 Wt1 0.727 0.606 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv5_m2 MA1564.2 oligos_7nt_mkv5_m2 SP9 0.854 0.592 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_7nt_mkv5_m2 MA0742.2 oligos_7nt_mkv5_m2 KLF12 0.931 0.573 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA1511.2 oligos_7nt_mkv5_m2 KLF10 0.928 0.571 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA0079.5 oligos_7nt_mkv5_m2 SP1 0.928 0.571 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA0747.2 oligos_7nt_mkv5_m2 SP8 0.733 0.564 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_7nt_mkv5_m2 MA1512.2 oligos_7nt_mkv5_m2 KLF11 0.813 0.563 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_7nt_mkv5_m2 MA0516.3 oligos_7nt_mkv5_m2 SP2 0.910 0.560 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA0740.2 oligos_7nt_mkv5_m2 KLF14 0.902 0.555 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA0685.2 oligos_7nt_mkv5_m2 SP4 0.896 0.552 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m2 MA1630.3 oligos_7nt_mkv5_m2 ZNF281 0.796 0.551 12 10 9 13 0.6923 0.7500 0.9000 R -1
oligos_7nt_mkv5_m2 MA0741.1 oligos_7nt_mkv5_m2 KLF16 0.857 0.551 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m2 MA1102.3 oligos_7nt_mkv5_m2 CTCFL 0.811 0.541 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_7nt_mkv5_m2 MA1961.2 oligos_7nt_mkv5_m2 PATZ1 0.838 0.539 12 11 9 14 0.6429 0.7500 0.8182 R -2
oligos_7nt_mkv5_m2 MA0746.3 oligos_7nt_mkv5_m2 SP3 0.825 0.530 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m2 MA0155.1 oligos_7nt_mkv5_m2 INSM1 0.721 0.515 12 12 10 14 0.7143 0.8333 0.8333 R 2
oligos_7nt_mkv5_m2 MA1653.2 oligos_7nt_mkv5_m2 ZNF148 0.728 0.504 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_7nt_mkv5_m2 MA1959.2 oligos_7nt_mkv5_m2 KLF7 0.935 0.504 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m2 MA1513.2 oligos_7nt_mkv5_m2 KLF15 0.922 0.497 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_7nt_mkv5_m2 MA0139.2 oligos_7nt_mkv5_m2 CTCF 0.713 0.490 12 15 11 16 0.6875 0.9167 0.7333 R 1
oligos_7nt_mkv5_m2 MA1517.2 oligos_7nt_mkv5_m2 KLF6 0.776 0.478 12 9 8 13 0.6154 0.6667 0.8889 D -1
oligos_7nt_mkv5_m2 MA0493.3 oligos_7nt_mkv5_m2 KLF1 0.873 0.470 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m2 MA1515.2 oligos_7nt_mkv5_m2 KLF2 0.873 0.470 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_7nt_mkv5_m2 MA1548.2 oligos_7nt_mkv5_m2 PLAGL2 0.700 0.467 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv5_m2 MA0599.1 oligos_7nt_mkv5_m2 KLF5 0.803 0.459 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m2 MA0753.3 oligos_7nt_mkv5_m2 ZNF740 0.799 0.456 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_7nt_mkv5_m2 MA2126.1 oligos_7nt_mkv5_m2 Zfp961 0.838 0.451 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m2 MA1578.2 oligos_7nt_mkv5_m2 VEZF1 0.829 0.414 12 6 6 12 0.5000 0.5000 1.0000 D 4
oligos_7nt_mkv5_m2 MA1516.2 oligos_7nt_mkv5_m2 KLF3 0.885 0.413 12 10 7 15 0.4667 0.5833 0.7000 D -3
oligos_7nt_mkv5_m2 MA0039.5 oligos_7nt_mkv5_m2 KLF4 0.762 0.410 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_7nt_mkv5_m2 MA1713.2 oligos_7nt_mkv5_m2 ZNF610 0.717 0.410 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m2 MA1522.2 oligos_7nt_mkv5_m2 MAZ 0.748 0.403 12 8 7 13 0.5385 0.5833 0.8750 D 5 
 Host name	rsat
 Job started	2026-01-05.131230
 Job done	2026-01-05.131243
 Seconds	2.25
	user	2.25
	system	0.78
	cuser	9.4
;	csystem	1.07