/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf
		file1	1	12	21277
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m3 MA0733.2 oligos_7nt_mkv5_m3 EGR4 0.795 0.728 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m3 MA0732.2 oligos_7nt_mkv5_m3 EGR3 0.785 0.719 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m3 MA0472.2 oligos_7nt_mkv5_m3 EGR2 0.768 0.704 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m3 MA0162.5 oligos_7nt_mkv5_m3 EGR1 0.843 0.703 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv5_m3 MA1564.2 oligos_7nt_mkv5_m3 SP9 0.824 0.570 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_7nt_mkv5_m3 MA1512.2 oligos_7nt_mkv5_m3 KLF11 0.789 0.546 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_7nt_mkv5_m3 MA0742.2 oligos_7nt_mkv5_m3 KLF12 0.847 0.521 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA0746.3 oligos_7nt_mkv5_m3 SP3 0.795 0.511 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m3 MA0740.2 oligos_7nt_mkv5_m3 KLF14 0.825 0.508 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA0685.2 oligos_7nt_mkv5_m3 SP4 0.824 0.507 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA1511.2 oligos_7nt_mkv5_m3 KLF10 0.823 0.507 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA0516.3 oligos_7nt_mkv5_m3 SP2 0.815 0.501 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA0741.1 oligos_7nt_mkv5_m3 KLF16 0.776 0.499 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m3 MA1959.2 oligos_7nt_mkv5_m3 KLF7 0.926 0.499 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m3 MA1517.2 oligos_7nt_mkv5_m3 KLF6 0.801 0.493 12 9 8 13 0.6154 0.6667 0.8889 D -1
oligos_7nt_mkv5_m3 MA1513.2 oligos_7nt_mkv5_m3 KLF15 0.905 0.487 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_7nt_mkv5_m3 MA0079.5 oligos_7nt_mkv5_m3 SP1 0.786 0.484 12 9 8 13 0.6154 0.6667 0.8889 R -1
oligos_7nt_mkv5_m3 MA1961.2 oligos_7nt_mkv5_m3 PATZ1 0.738 0.475 12 11 9 14 0.6429 0.7500 0.8182 R -2
oligos_7nt_mkv5_m3 MA1515.2 oligos_7nt_mkv5_m3 KLF2 0.876 0.472 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_7nt_mkv5_m3 MA0493.3 oligos_7nt_mkv5_m3 KLF1 0.865 0.466 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m3 MA2126.1 oligos_7nt_mkv5_m3 Zfp961 0.855 0.460 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_7nt_mkv5_m3 MA0599.1 oligos_7nt_mkv5_m3 KLF5 0.799 0.457 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m3 MA0748.3 oligos_7nt_mkv5_m3 YY2 0.718 0.419 12 7 7 12 0.5833 0.5833 1.0000 R 1
oligos_7nt_mkv5_m3 MA1516.2 oligos_7nt_mkv5_m3 KLF3 0.896 0.418 12 10 7 15 0.4667 0.5833 0.7000 D -3 
 Host name	rsat
 Job started	2026-01-05.131243
 Job done	2026-01-05.131252
 Seconds	1.57
	user	1.57
	system	0.52
	cuser	6.33
;	csystem	0.68