One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGGCCCGss ; Alignment reference a 0 4639 4281 1031 1932 605 439 520 1420 1087 4604 5305 c 0 15820 13706 32008 3533 3658 32581 31692 30617 2714 13014 12535 g 0 10449 12994 1799 28576 30724 2430 2652 2576 30984 14046 13556 t 0 4981 4908 1051 1848 902 439 1025 1276 1104 4225 4493

MA2328.1_shift1 (ZBED4)
; oligos_7nt_mkv5_m5 versus MA2328.1 (ZBED4); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.66465; -CcCGCyCCGC- ; cor=; Ncor= a 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0

MA1513.2_shift1 (KLF15)
; oligos_7nt_mkv5_m5 versus MA1513.2 (KLF15); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.56218; -cCCCGCCC--- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1959.2_rc_shift1 (KLF7_rc)
; oligos_7nt_mkv5_m5 versus MA1959.2_rc (KLF7_rc); m=3/10; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.530425; -CcMCGCCC--- ; cor=; Ncor= a 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1728.2_shift1 (ZNF549)
; oligos_7nt_mkv5_m5 versus MA1728.2 (ZNF549); m=4/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.512978; -TGCTGCCC--- ; cor=; Ncor= a 0 483.0 72.0 50.0 229.0 28.0 55.0 106.0 183.0 0 0 0 c 0 349.0 161.0 4622.0 175.0 80.0 4364.0 4435.0 4133.0 0 0 0 g 0 498.0 4489.0 77.0 128.0 4566.0 177.0 98.0 75.0 0 0 0 t 0 3497.0 105.0 78.0 4295.0 153.0 231.0 188.0 436.0 0 0 0

MA0079.5_rc_shift0 (SP1_rc)
; oligos_7nt_mkv5_m5 versus MA0079.5_rc (SP1_rc); m=5/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.496096; CyCCKCCCC--- ; cor=; Ncor= a 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0

MA1511.2_rc_shift0 (KLF10_rc)
; oligos_7nt_mkv5_m5 versus MA1511.2_rc (KLF10_rc); m=6/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.493592; CCMCGCCCC--- ; cor=; Ncor= a 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0

MA0742.2_rc_shift0 (KLF12_rc)
; oligos_7nt_mkv5_m5 versus MA0742.2_rc (KLF12_rc); m=7/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.488013; CCCCGCCCC--- ; cor=; Ncor= a 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0

MA0516.3_rc_shift0 (SP2_rc)
; oligos_7nt_mkv5_m5 versus MA0516.3_rc (SP2_rc); m=8/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.474171; cCCCGCCCC--- ; cor=; Ncor= a 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0

MA0740.2_rc_shift0 (KLF14_rc)
; oligos_7nt_mkv5_m5 versus MA0740.2_rc (KLF14_rc); m=9/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.472542; CCMCGCCCm--- ; cor=; Ncor= a 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0

MA0685.2_rc_shift0 (SP4_rc)
; oligos_7nt_mkv5_m5 versus MA0685.2_rc (SP4_rc); m=10/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.468893; CyCCKCCCc--- ; cor=; Ncor= a 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGGCCCGss ; Alignment reference a 0 4639 4281 1031 1932 605 439 520 1420 1087 4604 5305 c 0 15820 13706 32008 3533 3658 32581 31692 30617 2714 13014 12535 g 0 10449 12994 1799 28576 30724 2430 2652 2576 30984 14046 13556 t 0 4981 4908 1051 1848 902 439 1025 1276 1104 4225 4493
MA2328.1_shift1 (ZBED4)				; oligos_7nt_mkv5_m5 versus MA2328.1 (ZBED4); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.66465; -CcCGCyCCGC- ; cor=; Ncor= a 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0
MA1513.2_shift1 (KLF15)				; oligos_7nt_mkv5_m5 versus MA1513.2 (KLF15); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.56218; -cCCCGCCC--- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1959.2_rc_shift1 (KLF7_rc)				; oligos_7nt_mkv5_m5 versus MA1959.2_rc (KLF7_rc); m=3/10; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.530425; -CcMCGCCC--- ; cor=; Ncor= a 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1728.2_shift1 (ZNF549)				; oligos_7nt_mkv5_m5 versus MA1728.2 (ZNF549); m=4/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.512978; -TGCTGCCC--- ; cor=; Ncor= a 0 483.0 72.0 50.0 229.0 28.0 55.0 106.0 183.0 0 0 0 c 0 349.0 161.0 4622.0 175.0 80.0 4364.0 4435.0 4133.0 0 0 0 g 0 498.0 4489.0 77.0 128.0 4566.0 177.0 98.0 75.0 0 0 0 t 0 3497.0 105.0 78.0 4295.0 153.0 231.0 188.0 436.0 0 0 0
MA0079.5_rc_shift0 (SP1_rc)				; oligos_7nt_mkv5_m5 versus MA0079.5_rc (SP1_rc); m=5/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.496096; CyCCKCCCC--- ; cor=; Ncor= a 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0
MA1511.2_rc_shift0 (KLF10_rc)				; oligos_7nt_mkv5_m5 versus MA1511.2_rc (KLF10_rc); m=6/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.493592; CCMCGCCCC--- ; cor=; Ncor= a 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0
MA0742.2_rc_shift0 (KLF12_rc)				; oligos_7nt_mkv5_m5 versus MA0742.2_rc (KLF12_rc); m=7/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.488013; CCCCGCCCC--- ; cor=; Ncor= a 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0
MA0516.3_rc_shift0 (SP2_rc)				; oligos_7nt_mkv5_m5 versus MA0516.3_rc (SP2_rc); m=8/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.474171; cCCCGCCCC--- ; cor=; Ncor= a 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0
MA0740.2_rc_shift0 (KLF14_rc)				; oligos_7nt_mkv5_m5 versus MA0740.2_rc (KLF14_rc); m=9/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.472542; CCMCGCCCm--- ; cor=; Ncor= a 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0
MA0685.2_rc_shift0 (SP4_rc)				; oligos_7nt_mkv5_m5 versus MA0685.2_rc (SP4_rc); m=10/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.468893; CyCCKCCCc--- ; cor=; Ncor= a 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0