compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files prefix $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html html_index $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf file1 1 17 5980 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_7nt_m2 | MA0048.3 | positions_7nt_m2 | NHLH1 | 0.778 | 0.412 | 17 | 9 | 9 | 17 | 0.5294 | 0.5294 | 1.0000 | R | 7 |
| positions_7nt_m2 | MA1599.2 | positions_7nt_m2 | ZNF682 | 0.729 | 0.405 | 17 | 11 | 10 | 18 | 0.5556 | 0.5882 | 0.9091 | R | -1 |
| positions_7nt_m2 | MA1721.2 | positions_7nt_m2 | ZNF93 | 0.730 | 0.402 | 17 | 14 | 11 | 20 | 0.5500 | 0.6471 | 0.7857 | D | 6 |
Host name rsat Job started 2026-01-05.131301 Job done 2026-01-05.131303 Seconds 0.54 user 0.54 system 0.07 cuser 0.8 ; csystem 0.07