One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.125527_2026-01-05.125527_ogDb5d/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; ssCGGAGCGss ; Alignment reference a 4147 4438 1172 1364 367 21283 250 1459 1420 4414 4612 c 10528 8928 24624 1253 1638 3017 484 25020 3468 9858 8095 g 9825 11285 1860 24938 26377 3567 27654 1289 21877 10412 11854 t 4085 3934 929 1030 203 718 197 817 1820 3901 4024

MA2328.1_rc_shift1 (ZBED4_rc)
; oligos_6nt_mkv4_m5 versus MA2328.1_rc (ZBED4_rc); m=1/10; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.803779; -GCGGrGCGgG ; cor=; Ncor= a 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0

MA1713.2_rc_shift3 (ZNF610_rc)
; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=2/10; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.546507; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0

MA0079.5_shift3 (SP1)
; oligos_6nt_mkv4_m5 versus MA0079.5 (SP1); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.508049; ---GGGGMGGr ; cor=; Ncor= a 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 c 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 g 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 t 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101

MA1511.2_shift3 (KLF10)
; oligos_6nt_mkv4_m5 versus MA1511.2 (KLF10); m=4/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.505353; ---GGGGCGKG ; cor=; Ncor= a 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 c 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 g 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 t 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699

MA0742.2_shift3 (KLF12)
; oligos_6nt_mkv4_m5 versus MA0742.2 (KLF12); m=5/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.500732; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 c 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 g 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 t 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351

MA0516.3_shift3 (SP2)
; oligos_6nt_mkv4_m5 versus MA0516.3 (SP2); m=6/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484759; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 c 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 g 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 t 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138

MA0740.2_shift3 (KLF14)
; oligos_6nt_mkv4_m5 versus MA0740.2 (KLF14); m=7/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484072; ---kGGGCGKG ; cor=; Ncor= a 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 c 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 g 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 t 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877

MA0685.2_shift3 (SP4)
; oligos_6nt_mkv4_m5 versus MA0685.2 (SP4); m=8/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.480706; ---gGGGMGGr ; cor=; Ncor= a 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 c 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 g 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 t 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374

MA1959.2_shift4 (KLF7)
; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=9/10; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.429877; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0

MA1513.2_rc_shift4 (KLF15_rc)
; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=10/10; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.429673; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift4 ; 47 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wtATTTTTAww ; Alignment reference a 0 0 0 0 14257 12595 44664 2652 3292 2079 3039 4231 44303 16467 17323 c 0 0 0 0 7692 10974 1930 1691 1606 1549 2434 2302 1972 8249 9121 g 0 0 0 0 10772 8367 2187 1880 1831 1128 1899 1548 1846 9367 7532 t 0 0 0 0 18363 19148 2303 44861 44355 46328 43712 43003 2963 17001 17108

MA0052.5_rc_shift4 (MEF2A_rc)
; oligos_7nt_mkv5_m1 versus MA0052.5_rc (MEF2A_rc); m=1/46; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.780703; ----CTATTTTTAg- ; cor=; Ncor= a 0 0 0 0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 0 c 0 0 0 0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 0 g 0 0 0 0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 0 t 0 0 0 0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 0

MA2124.1_shift6 (Hmga1)
; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=2/46; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.725245; ------ATTTTTAw- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0

MA0773.1_rc_shift3 (MEF2D_rc)
; oligos_7nt_mkv5_m1 versus MA0773.1_rc (MEF2D_rc); m=3/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.700558; ---kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0

MA0497.2_rc_shift3 (MEF2C_rc)
; oligos_7nt_mkv5_m1 versus MA0497.2_rc (MEF2C_rc); m=4/46; ncol2=11; w=-1; offset=-1; strand=R; shift=3; score=0.683648; ---kCTATTTTTrg- ; cor=; Ncor= a 0 0 0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 0 c 0 0 0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 0 g 0 0 0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 0 t 0 0 0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 0

MA0660.1_rc_shift3 (MEF2B_rc)
; oligos_7nt_mkv5_m1 versus MA0660.1_rc (MEF2B_rc); m=5/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.682548; ---kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0

MA1125.2_rc_shift4 (ZNF384_rc)
; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=6/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.558678; ----ttTTTTTT--- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0

MA0148.5_rc_shift6 (FOXA1_rc)
; oligos_7nt_mkv5_m1 versus MA0148.5_rc (FOXA1_rc); m=7/46; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.537241; ------ATGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 0 c 0 0 0 0 0 0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 0 g 0 0 0 0 0 0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 0 t 0 0 0 0 0 0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 0

MA0108.3_rc_shift8 (TBP_rc)
; oligos_7nt_mkv5_m1 versus MA0108.3_rc (TBP_rc); m=8/46; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.531171; --------wTWTATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 121.0 6.0 121.0 30.0 374.0 35.0 309.0 c 0 0 0 0 0 0 0 0 44.0 20.0 0.0 5.0 2.0 2.0 18.0 g 0 0 0 0 0 0 0 0 2.0 3.0 0.0 0.0 10.0 0.0 46.0 t 0 0 0 0 0 0 0 0 222.0 360.0 268.0 354.0 3.0 352.0 16.0

MA1563.2_rc_shift4 (SOX18_rc)
; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=9/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.527056; ----bhATTGTt--- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0

MA0047.4_rc_shift7 (FOXA2_rc)
; oligos_7nt_mkv5_m1 versus MA0047.4_rc (FOXA2_rc); m=10/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.523683; -------TGTTTACw ; cor=; Ncor= a 0 0 0 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 c 0 0 0 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 g 0 0 0 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 t 0 0 0 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0

MA2118.1_rc_shift7 (FOXS1_rc)
; oligos_7nt_mkv5_m1 versus MA2118.1_rc (FOXS1_rc); m=11/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.517049; -------TGTTTACa ; cor=; Ncor= a 0 0 0 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 c 0 0 0 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 g 0 0 0 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 t 0 0 0 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0

MA0032.2_rc_shift6 (FOXC1_rc)
; oligos_7nt_mkv5_m1 versus MA0032.2_rc (FOXC1_rc); m=12/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.511243; ------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0

MA0845.1_rc_shift6 (FOXB1_rc)
; oligos_7nt_mkv5_m1 versus MA0845.1_rc (FOXB1_rc); m=13/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.49745; ------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0

MA0033.2_rc_shift7 (FOXL1_rc)
; oligos_7nt_mkv5_m1 versus MA0033.2_rc (FOXL1_rc); m=14/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.487399; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0

MA0901.3_rc_shift8 (HOXB13_rc)
; oligos_7nt_mkv5_m1 versus MA0901.3_rc (HOXB13_rc); m=15/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.484683; --------TTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 0 0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 0 0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 0 0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0

MA1606.2_rc_shift7 (Foxf1_rc)
; oligos_7nt_mkv5_m1 versus MA1606.2_rc (Foxf1_rc); m=16/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.478886; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 c 0 0 0 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 g 0 0 0 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 t 0 0 0 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0

MA0913.3_rc_shift8 (HOXD9_rc)
; oligos_7nt_mkv5_m1 versus MA0913.3_rc (HOXD9_rc); m=17/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.47261; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0

MA0899.2_rc_shift8 (HOXA10_rc)
; oligos_7nt_mkv5_m1 versus MA0899.2_rc (HOXA10_rc); m=18/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.468723; --------tTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0

MA1103.3_rc_shift7 (FOXK2_rc)
; oligos_7nt_mkv5_m1 versus MA1103.3_rc (FOXK2_rc); m=19/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.467094; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 c 0 0 0 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 g 0 0 0 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 t 0 0 0 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0

MA1473.2_rc_shift8 (CDX4_rc)
; oligos_7nt_mkv5_m1 versus MA1473.2_rc (CDX4_rc); m=20/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.46642; --------tTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0

MA0481.4_rc_shift7 (FOXP1_rc)
; oligos_7nt_mkv5_m1 versus MA0481.4_rc (FOXP1_rc); m=21/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464603; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 c 0 0 0 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 g 0 0 0 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 t 0 0 0 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0

MA0868.3_rc_shift5 (SOX8_rc)
; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=22/46; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.464153; -----yATTGTT--- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0

MA0031.2_rc_shift7 (FOXD1_rc)
; oligos_7nt_mkv5_m1 versus MA0031.2_rc (FOXD1_rc); m=23/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464036; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0

MA0848.1_rc_shift7 (FOXO4_rc)
; oligos_7nt_mkv5_m1 versus MA0848.1_rc (FOXO4_rc); m=24/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.463267; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0

MA0042.2_rc_shift7 (FOXI1_rc)
; oligos_7nt_mkv5_m1 versus MA0042.2_rc (FOXI1_rc); m=25/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462816; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0

MA1683.2_rc_shift7 (FOXA3_rc)
; oligos_7nt_mkv5_m1 versus MA1683.2_rc (FOXA3_rc); m=26/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462789; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 c 0 0 0 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 g 0 0 0 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 t 0 0 0 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0

MA2117.1_rc_shift7 (FOXP4_rc)
; oligos_7nt_mkv5_m1 versus MA2117.1_rc (FOXP4_rc); m=27/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.459429; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 c 0 0 0 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 g 0 0 0 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 t 0 0 0 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0

MA0852.3_rc_shift7 (FOXK1_rc)
; oligos_7nt_mkv5_m1 versus MA0852.3_rc (FOXK1_rc); m=28/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456679; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 c 0 0 0 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 g 0 0 0 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 t 0 0 0 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0

MA0850.1_rc_shift7 (FOXP3_rc)
; oligos_7nt_mkv5_m1 versus MA0850.1_rc (FOXP3_rc); m=29/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456436; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0

MA0157.4_rc_shift7 (Foxo3_rc)
; oligos_7nt_mkv5_m1 versus MA0157.4_rc (Foxo3_rc); m=30/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456047; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 c 0 0 0 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 g 0 0 0 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 t 0 0 0 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0

MA0849.1_rc_shift7 (FOXO6_rc)
; oligos_7nt_mkv5_m1 versus MA0849.1_rc (FOXO6_rc); m=31/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.453778; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0

MA0601.2_shift8 (Arid3b)
; oligos_7nt_mkv5_m1 versus MA0601.2 (Arid3b); m=32/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447254; --------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0

MA0619.2_shift8 (LIN54)
; oligos_7nt_mkv5_m1 versus MA0619.2 (LIN54); m=33/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447239; --------TTTrAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 c 0 0 0 0 0 0 0 0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 999.0 999.0 788.0 0.0 0.0 0.0 685.0

MA0878.3_rc_shift8 (CDX1_rc)
; oligos_7nt_mkv5_m1 versus MA0878.3_rc (CDX1_rc); m=34/46; ncol2=10; w=0; offset=4; strand=R; shift=8; score=0.443001; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 854.0 0.0 29.0 230.0 8617.0 0.0 355.0 c 0 0 0 0 0 0 0 0 754.0 0.0 97.0 0.0 0.0 344.0 0.0 g 0 0 0 0 0 0 0 0 1418.0 0.0 72.0 56.0 0.0 0.0 3795.0 t 0 0 0 0 0 0 0 0 7199.0 8617.0 8617.0 8617.0 0.0 8617.0 4822.0

MA0757.2_rc_shift0 (ONECUT3_rc)
; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=35/46; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.441202; tTATyGATTTTt--- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0

MA1607.2_rc_shift7 (Foxl2_rc)
; oligos_7nt_mkv5_m1 versus MA1607.2_rc (Foxl2_rc); m=36/46; ncol2=10; w=0; offset=3; strand=R; shift=7; score=0.436214; -------TGTTTACA ; cor=; Ncor= a 0 0 0 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 c 0 0 0 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 g 0 0 0 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 t 0 0 0 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0

MA0907.2_rc_shift8 (HOXC13_rc)
; oligos_7nt_mkv5_m1 versus MA0907.2_rc (HOXC13_rc); m=37/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.433776; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0

MA0905.2_rc_shift8 (HOXC10_rc)
; oligos_7nt_mkv5_m1 versus MA0905.2_rc (HOXC10_rc); m=38/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.427605; --------tTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0

MA0908.2_rc_shift8 (HOXD11_rc)
; oligos_7nt_mkv5_m1 versus MA0908.2_rc (HOXD11_rc); m=39/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.42637; --------tTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 230.0 230.0 230.0 175.0 8.0 68.0 16.0

MA0485.3_rc_shift8 (HOXC9_rc)
; oligos_7nt_mkv5_m1 versus MA0485.3_rc (HOXC9_rc); m=40/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.420922; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0

MA0151.1_rc_shift9 (Arid3a_rc)
; oligos_7nt_mkv5_m1 versus MA0151.1_rc (Arid3a_rc); m=41/46; ncol2=6; w=0; offset=5; strand=R; shift=9; score=0.415824; ---------TTTrAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0

MA1503.2_rc_shift8 (HOXB9_rc)
; oligos_7nt_mkv5_m1 versus MA1503.2_rc (HOXB9_rc); m=42/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.415501; --------tTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0

MA0909.4_rc_shift9 (Hoxd13_rc)
; oligos_7nt_mkv5_m1 versus MA0909.4_rc (Hoxd13_rc); m=43/46; ncol2=7; w=0; offset=5; strand=R; shift=9; score=0.412869; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 c 0 0 0 0 0 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 g 0 0 0 0 0 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 t 0 0 0 0 0 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0

MA0650.4_rc_shift9 (Hoxa13_rc)
; oligos_7nt_mkv5_m1 versus MA0650.4_rc (Hoxa13_rc); m=44/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.411922; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 247.0 212.0 832.0 16662.0 929.0 1439.0 c 0 0 0 0 0 0 0 0 0 145.0 98.0 407.0 232.0 666.0 146.0 g 0 0 0 0 0 0 0 0 0 306.0 125.0 205.0 249.0 243.0 1594.0 t 0 0 0 0 0 0 0 0 0 16550.0 16813.0 15804.0 105.0 15410.0 14069.0

MA0911.2_rc_shift8 (Hoxa11_rc)
; oligos_7nt_mkv5_m1 versus MA0911.2_rc (Hoxa11_rc); m=45/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.410005; --------tTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 0 704.0 704.0 704.0 489.0 14.0 250.0 30.0

MA0465.3_rc_shift9 (CDX2_rc)
; oligos_7nt_mkv5_m1 versus MA0465.3_rc (CDX2_rc); m=46/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.404557; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 804.0 666.0 1045.0 30975.0 459.0 1810.0 c 0 0 0 0 0 0 0 0 0 502.0 366.0 999.0 386.0 1196.0 184.0 g 0 0 0 0 0 0 0 0 0 595.0 349.0 761.0 391.0 414.0 3312.0 t 0 0 0 0 0 0 0 0 0 30125.0 30645.0 29221.0 274.0 29957.0 26720.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift3 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCtCgss ; Alignment reference a 0 0 0 2391 2623 447 409 474 684 352 1013 255 1266 2121 2608 c 0 0 0 9671 7499 19833 620 18867 16303 18433 2890 19765 4274 9655 8592 g 0 0 0 6340 8452 614 19580 1112 3586 2131 4922 950 14070 6666 7016 t 0 0 0 2875 2703 383 668 824 704 361 12452 307 1667 2835 3061

MA0733.2_shift4 (EGR4)
; oligos_7nt_mkv5_m3 versus MA0733.2 (EGR4); m=1/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.728418; ----mCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0

MA0732.2_shift4 (EGR3)
; oligos_7nt_mkv5_m3 versus MA0732.2 (EGR3); m=2/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.719175; ----mCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0

MA0472.2_shift4 (EGR2)
; oligos_7nt_mkv5_m3 versus MA0472.2 (EGR2); m=3/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.703682; ----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0

MA0162.5_shift4 (EGR1)
; oligos_7nt_mkv5_m3 versus MA0162.5 (EGR1); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.702654; ----mCGCCCACgC- ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0

MA1564.2_shift2 (SP9)
; oligos_7nt_mkv5_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.570122; --cCmCGCCCmc--- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0 0

MA1512.2_shift2 (KLF11)
; oligos_7nt_mkv5_m3 versus MA1512.2 (KLF11); m=6/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.545948; --cCACGCCCmC--- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_7nt_mkv5_m3 versus MA0742.2_rc (KLF12_rc); m=7/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.520956; --CCCCGCCCC---- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0 0

MA0746.3_shift1 (SP3)
; oligos_7nt_mkv5_m3 versus MA0746.3 (SP3); m=8/24; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.510847; -rCCACGCCCmC--- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0 0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_7nt_mkv5_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.507513; --CCMCGCCCm---- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_7nt_mkv5_m3 versus MA0685.2_rc (SP4_rc); m=10/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.507333; --CyCCKCCCc---- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_7nt_mkv5_m3 versus MA1511.2_rc (KLF10_rc); m=11/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.506709; --CCMCGCCCC---- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_7nt_mkv5_m3 versus MA0516.3_rc (SP2_rc); m=12/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.501458; --cCCCGCCCC---- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0 0

MA0741.1_shift1 (KLF16)
; oligos_7nt_mkv5_m3 versus MA0741.1 (KLF16); m=13/24; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.499108; -gmCMCgCCCMC--- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_7nt_mkv5_m3 versus MA1959.2_rc (KLF7_rc); m=14/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.498872; --CcMCGCCC----- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0 0

MA1517.2_shift2 (KLF6)
; oligos_7nt_mkv5_m3 versus MA1517.2 (KLF6); m=15/24; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.492853; --cCACRCCCm---- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0

MA1513.2_shift2 (KLF15)
; oligos_7nt_mkv5_m3 versus MA1513.2 (KLF15); m=16/24; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.487325; --cCCCGCCC----- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_7nt_mkv5_m3 versus MA0079.5_rc (SP1_rc); m=17/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.483552; --CyCCKCCCC---- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_7nt_mkv5_m3 versus MA1961.2_rc (PATZ1_rc); m=18/24; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.474528; -sCCCCkCCCCs--- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_7nt_mkv5_m3 versus MA1515.2 (KLF2); m=19/24; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.471508; --CCmCrCCC----- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0 0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_7nt_mkv5_m3 versus MA0493.3_rc (KLF1_rc); m=20/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.465791; --CCmCrCCC----- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0 0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_7nt_mkv5_m3 versus MA2126.1_rc (Zfp961_rc); m=21/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.460494; --TGGCGCCC----- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0 0

MA0599.1_shift1 (KLF5)
; oligos_7nt_mkv5_m3 versus MA0599.1 (KLF5); m=22/24; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.45675; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA0748.3_rc_shift4 (YY2_rc)
; oligos_7nt_mkv5_m3 versus MA0748.3_rc (YY2_rc); m=23/24; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.418895; ----CCGCCAT---- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 0 0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 0 0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 0 0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0 0 0 0

MA1516.2_shift0 (KLF3)
; oligos_7nt_mkv5_m3 versus MA1516.2 (KLF3); m=24/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.418273; grCCrCGCCC----- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift3 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m2_shift3 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCCCgss ; Alignment reference a 0 0 0 4064 3832 847 844 833 848 927 1061 1091 2753 3753 4002 c 0 0 0 17323 16148 34228 575 32573 29928 28599 29983 31669 7154 17815 16802 g 0 0 0 11270 13293 1285 34377 2236 5120 6244 4931 3252 24236 11652 12013 t 0 0 0 4289 3673 586 1150 1304 1050 1176 971 934 2803 3726 4129

MA0732.2_shift4 (EGR3)
; oligos_7nt_mkv5_m2 versus MA0732.2 (EGR3); m=1/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.722721; ----mCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0

MA0733.2_shift4 (EGR4)
; oligos_7nt_mkv5_m2 versus MA0733.2 (EGR4); m=2/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.712632; ----mCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0

MA0162.5_shift4 (EGR1)
; oligos_7nt_mkv5_m2 versus MA0162.5 (EGR1); m=3/36; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.692645; ----mCGCCCACgC- ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0

MA0472.2_shift4 (EGR2)
; oligos_7nt_mkv5_m2 versus MA0472.2 (EGR2); m=4/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.678829; ----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0

MA1627.2_shift4 (Wt1)
; oligos_7nt_mkv5_m2 versus MA1627.2 (Wt1); m=5/36; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.605825; ----cCTCCCCCAC- ; cor=; Ncor= a 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 c 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 g 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 t 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0

MA1564.2_shift2 (SP9)
; oligos_7nt_mkv5_m2 versus MA1564.2 (SP9); m=6/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.591507; --cCmCGCCCmc--- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_7nt_mkv5_m2 versus MA0742.2_rc (KLF12_rc); m=7/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.572646; --CCCCGCCCC---- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_7nt_mkv5_m2 versus MA1511.2_rc (KLF10_rc); m=8/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.571305; --CCMCGCCCC---- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0 0

MA0079.5_rc_shift2 (SP1_rc)
; oligos_7nt_mkv5_m2 versus MA0079.5_rc (SP1_rc); m=9/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.57081; --CyCCKCCCC---- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0 0

MA0747.2_shift2 (SP8)
; oligos_7nt_mkv5_m2 versus MA0747.2 (SP8); m=10/36; ncol2=11; w=-1; offset=-1; strand=D; shift=2; score=0.563903; --mCACgCCCmCy-- ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0

MA1512.2_shift2 (KLF11)
; oligos_7nt_mkv5_m2 versus MA1512.2 (KLF11); m=11/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.562829; --cCACGCCCmC--- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_7nt_mkv5_m2 versus MA0516.3_rc (SP2_rc); m=12/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.559978; --cCCCGCCCC---- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0 0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_7nt_mkv5_m2 versus MA0740.2_rc (KLF14_rc); m=13/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.555153; --CCMCGCCCm---- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_7nt_mkv5_m2 versus MA0685.2_rc (SP4_rc); m=14/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.551578; --CyCCKCCCc---- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0 0

MA1630.3_rc_shift2 (ZNF281_rc)
; oligos_7nt_mkv5_m2 versus MA1630.3_rc (ZNF281_rc); m=15/36; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.551233; --CCCCTCCCCC--- ; cor=; Ncor= a 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 0 0 c 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 0 0 g 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 0 0 t 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0 0 0

MA0741.1_shift1 (KLF16)
; oligos_7nt_mkv5_m2 versus MA0741.1 (KLF16); m=16/36; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.551033; -gmCMCgCCCMC--- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA1102.3_rc_shift6 (CTCFL_rc)
; oligos_7nt_mkv5_m2 versus MA1102.3_rc (CTCFL_rc); m=17/36; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.540706; ------GCCCCCTG- ; cor=; Ncor= a 0 0 0 0 0 0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 0 c 0 0 0 0 0 0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 0 g 0 0 0 0 0 0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 0 t 0 0 0 0 0 0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 0

MA1961.2_rc_shift1 (PATZ1_rc)
; oligos_7nt_mkv5_m2 versus MA1961.2_rc (PATZ1_rc); m=18/36; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.538691; -sCCCCkCCCCs--- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0 0

MA0746.3_shift1 (SP3)
; oligos_7nt_mkv5_m2 versus MA0746.3 (SP3); m=19/36; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.530123; -rCCACGCCCmC--- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0 0

MA0155.1_rc_shift5 (INSM1_rc)
; oligos_7nt_mkv5_m2 versus MA0155.1_rc (INSM1_rc); m=20/36; ncol2=12; w=0; offset=2; strand=R; shift=5; score=0.514755; -----ygmCCCCwkr ; cor=; Ncor= a 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 c 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 g 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 t 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0

MA1653.2_shift2 (ZNF148)
; oligos_7nt_mkv5_m2 versus MA1653.2 (ZNF148); m=21/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.504202; --CCCCTCCCcc--- ; cor=; Ncor= a 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 c 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 g 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 t 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_7nt_mkv5_m2 versus MA1959.2_rc (KLF7_rc); m=22/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.503623; --CcMCGCCC----- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0 0

MA1513.2_shift2 (KLF15)
; oligos_7nt_mkv5_m2 versus MA1513.2 (KLF15); m=23/36; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.496628; --cCCCGCCC----- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0 0

MA0139.2_rc_shift4 (CTCF_rc)
; oligos_7nt_mkv5_m2 versus MA0139.2_rc (CTCF_rc); m=24/36; ncol2=15; w=0; offset=1; strand=R; shift=4; score=0.490064; ----syGCCmyCTrs ; cor=; Ncor= a 0 0 0 0 37.0 17.0 67.0 71.0 8.0 341.0 9.0 3.0 18.0 324.0 11.0 c 0 0 0 0 307.0 507.0 5.0 775.0 890.0 504.0 566.0 903.0 32.0 48.0 334.0 g 0 0 0 0 482.0 13.0 733.0 8.0 0.0 12.0 3.0 0.0 11.0 433.0 528.0 t 0 0 0 0 82.0 372.0 104.0 56.0 12.0 54.0 333.0 5.0 851.0 107.0 40.0

MA1517.2_shift2 (KLF6)
; oligos_7nt_mkv5_m2 versus MA1517.2 (KLF6); m=25/36; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.477573; --cCACRCCCm---- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_7nt_mkv5_m2 versus MA0493.3_rc (KLF1_rc); m=26/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.470107; --CCmCrCCC----- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_7nt_mkv5_m2 versus MA1515.2 (KLF2); m=27/36; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.469817; --CCmCrCCC----- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0 0

MA1548.2_shift4 (PLAGL2)
; oligos_7nt_mkv5_m2 versus MA1548.2 (PLAGL2); m=28/36; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.466732; ----GGGCCCCC--- ; cor=; Ncor= a 0 0 0 0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 c 0 0 0 0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 g 0 0 0 0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 t 0 0 0 0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0

MA0599.1_shift1 (KLF5)
; oligos_7nt_mkv5_m2 versus MA0599.1 (KLF5); m=29/36; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.458893; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA0753.3_shift7 (ZNF740)
; oligos_7nt_mkv5_m2 versus MA0753.3 (ZNF740); m=30/36; ncol2=10; w=0; offset=4; strand=D; shift=7; score=0.456417; -------CCCCCCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_7nt_mkv5_m2 versus MA2126.1_rc (Zfp961_rc); m=31/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.451205; --TGGCGCCC----- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0 0

MA1578.2_shift7 (VEZF1)
; oligos_7nt_mkv5_m2 versus MA1578.2 (VEZF1); m=32/36; ncol2=6; w=0; offset=4; strand=D; shift=7; score=0.414371; -------CCCCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0

MA1516.2_shift0 (KLF3)
; oligos_7nt_mkv5_m2 versus MA1516.2 (KLF3); m=33/36; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.412991; grCCrCGCCC----- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0 0

MA0039.5_shift8 (KLF4)
; oligos_7nt_mkv5_m2 versus MA0039.5 (KLF4); m=34/36; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.410211; --------CCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0

MA1713.2_shift1 (ZNF610)
; oligos_7nt_mkv5_m2 versus MA1713.2 (ZNF610); m=35/36; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.409649; -scGCCGCTCC---- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0 0 0

MA1522.2_shift8 (MAZ)
; oligos_7nt_mkv5_m2 versus MA1522.2 (MAZ); m=36/36; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.402532; --------CCCCTCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 c 0 0 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 g 0 0 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 t 0 0 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGGCCCGss ; Alignment reference a 0 4639 4281 1031 1932 605 439 520 1420 1087 4604 5305 c 0 15820 13706 32008 3533 3658 32581 31692 30617 2714 13014 12535 g 0 10449 12994 1799 28576 30724 2430 2652 2576 30984 14046 13556 t 0 4981 4908 1051 1848 902 439 1025 1276 1104 4225 4493

MA2328.1_shift1 (ZBED4)
; oligos_7nt_mkv5_m5 versus MA2328.1 (ZBED4); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.66465; -CcCGCyCCGC- ; cor=; Ncor= a 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0

MA1513.2_shift1 (KLF15)
; oligos_7nt_mkv5_m5 versus MA1513.2 (KLF15); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.56218; -cCCCGCCC--- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1959.2_rc_shift1 (KLF7_rc)
; oligos_7nt_mkv5_m5 versus MA1959.2_rc (KLF7_rc); m=3/10; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.530425; -CcMCGCCC--- ; cor=; Ncor= a 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1728.2_shift1 (ZNF549)
; oligos_7nt_mkv5_m5 versus MA1728.2 (ZNF549); m=4/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.512978; -TGCTGCCC--- ; cor=; Ncor= a 0 483.0 72.0 50.0 229.0 28.0 55.0 106.0 183.0 0 0 0 c 0 349.0 161.0 4622.0 175.0 80.0 4364.0 4435.0 4133.0 0 0 0 g 0 498.0 4489.0 77.0 128.0 4566.0 177.0 98.0 75.0 0 0 0 t 0 3497.0 105.0 78.0 4295.0 153.0 231.0 188.0 436.0 0 0 0

MA0079.5_rc_shift0 (SP1_rc)
; oligos_7nt_mkv5_m5 versus MA0079.5_rc (SP1_rc); m=5/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.496096; CyCCKCCCC--- ; cor=; Ncor= a 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0

MA1511.2_rc_shift0 (KLF10_rc)
; oligos_7nt_mkv5_m5 versus MA1511.2_rc (KLF10_rc); m=6/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.493592; CCMCGCCCC--- ; cor=; Ncor= a 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0

MA0742.2_rc_shift0 (KLF12_rc)
; oligos_7nt_mkv5_m5 versus MA0742.2_rc (KLF12_rc); m=7/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.488013; CCCCGCCCC--- ; cor=; Ncor= a 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0

MA0516.3_rc_shift0 (SP2_rc)
; oligos_7nt_mkv5_m5 versus MA0516.3_rc (SP2_rc); m=8/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.474171; cCCCGCCCC--- ; cor=; Ncor= a 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0

MA0740.2_rc_shift0 (KLF14_rc)
; oligos_7nt_mkv5_m5 versus MA0740.2_rc (KLF14_rc); m=9/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.472542; CCMCGCCCm--- ; cor=; Ncor= a 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0

MA0685.2_rc_shift0 (SP4_rc)
; oligos_7nt_mkv5_m5 versus MA0685.2_rc (SP4_rc); m=10/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.468893; CyCCKCCCc--- ; cor=; Ncor= a 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGGCtGCGss ; Alignment reference a 0 0 0 3074 2716 794 792 558 414 775 469 594 1166 2755 2976 c 0 0 0 8848 6386 20775 1624 1327 21919 3947 1322 21439 3085 8024 8987 g 0 0 0 8643 11960 1509 20646 21088 1136 5423 21556 1084 18188 10068 8620 t 0 0 0 3174 2677 661 677 766 270 13594 392 622 1300 2892 3156

MA1721.2_shift0 (ZNF93)
; oligos_7nt_mkv5_m4 versus MA1721.2 (ZNF93); m=1/7; ncol2=14; w=-3; offset=-3; strand=D; shift=0; score=0.59329; gGyrkCrGCAGCGG- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0

MA0048.3_rc_shift4 (NHLH1_rc)
; oligos_7nt_mkv5_m4 versus MA0048.3_rc (NHLH1_rc); m=2/7; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.567642; ----GCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1529.2_shift0 (NHLH2)
; oligos_7nt_mkv5_m4 versus MA1529.2 (NHLH2); m=3/7; ncol2=16; w=-3; offset=-3; strand=D; shift=0; score=0.551442; gGyMGCAGCTGCGyC ; cor=; Ncor= a 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 c 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 g 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 t 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0

MA0500.3_shift4 (MYOG)
; oligos_7nt_mkv5_m4 versus MA0500.3 (MYOG); m=4/7; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.484246; ----rCAGCTGy--- ; cor=; Ncor= a 0 0 0 0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 0 0 0 c 0 0 0 0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 0 0 0 g 0 0 0 0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 0 0 0 t 0 0 0 0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 0 0 0

MA1100.3_shift4 (ASCL1)
; oligos_7nt_mkv5_m4 versus MA1100.3 (ASCL1); m=5/7; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.46788; ----rCAGCTGc--- ; cor=; Ncor= a 0 0 0 0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 0 0 0 c 0 0 0 0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 0 0 0 g 0 0 0 0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 0 0 0 t 0 0 0 0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 0 0 0

MA1713.2_rc_shift1 (ZNF610_rc)
; oligos_7nt_mkv5_m4 versus MA1713.2_rc (ZNF610_rc); m=6/7; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.43223; -GGAGCGGCgs---- ; cor=; Ncor= a 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 293.0 250.0 0 0 0 0 c 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 392.0 738.0 0 0 0 0 g 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 1347.0 1222.0 0 0 0 0 t 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0 354.0 176.0 0 0 0 0

MA1583.2_rc_shift3 (ZFP57_rc)
; oligos_7nt_mkv5_m4 versus MA1583.2_rc (ZFP57_rc); m=7/7; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.414406; ---TGCGGCA----- ; cor=; Ncor= a 0 0 0 156.0 187.0 59.0 7.0 36.0 24.0 6143.0 0 0 0 0 0 c 0 0 0 729.0 279.0 6166.0 719.0 16.0 6213.0 140.0 0 0 0 0 0 g 0 0 0 331.0 5828.0 16.0 5595.0 6254.0 71.0 37.0 0 0 0 0 0 t 0 0 0 5116.0 38.0 91.0 11.0 26.0 24.0 12.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift3 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCcCGss ; Alignment reference a 0 0 0 4657 5308 275 963 978 2156 225 511 3532 5045 c 0 0 0 16270 11482 34656 645 30153 24740 32366 1737 16452 11879 g 0 0 0 10762 15785 1055 34376 3580 7014 3296 33918 11798 14594 t 0 0 0 4776 3890 479 481 1754 2555 578 299 4683 4947

MA0162.5_shift4 (EGR1)
; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=1/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.586389; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0

MA1564.2_shift2 (SP9)
; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=2/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.586216; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA1959.2_rc_shift2 (KLF7_rc)
; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.577906; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA0131.3_shift4 (HINFP)
; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=4/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.573013; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0

MA1513.2_shift2 (KLF15)
; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=5/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.564741; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1515.2_shift2 (KLF2)
; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=6/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.548766; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA2126.1_rc_shift2 (Zfp961_rc)
; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.546038; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0

MA0493.3_rc_shift2 (KLF1_rc)
; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=8/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.536887; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA0742.2_rc_shift2 (KLF12_rc)
; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=9/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536654; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA0733.2_shift4 (EGR4)
; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=10/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534311; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0

MA0740.2_rc_shift2 (KLF14_rc)
; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=11/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.528721; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA1511.2_rc_shift2 (KLF10_rc)
; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=12/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.522703; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=13/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.512405; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA1516.2_shift0 (KLF3)
; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=14/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.47977; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0

MA0632.3_rc_shift6 (TCFL5_rc)
; oligos_6nt_mkv4_m1 versus MA0632.3_rc (TCFL5_rc); m=15/19; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.477468; ------GCGCGyG ; cor=; Ncor= a 0 0 0 0 0 0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 c 0 0 0 0 0 0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 g 0 0 0 0 0 0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 t 0 0 0 0 0 0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0

MA1727.2_rc_shift2 (ZNF417_rc)
; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=16/19; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.461691; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0

MA1650.2_shift2 (ZBTB14)
; oligos_6nt_mkv4_m1 versus MA1650.2 (ZBTB14); m=17/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.453905; --CCGCGCAC--- ; cor=; Ncor= a 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 0 0 c 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 0 0 g 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 0 0 t 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=18/19; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.417394; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

MA0471.3_rc_shift1 (E2F6_rc)
; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=19/19; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.415448; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift3 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift3 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGGCCGss ; Alignment reference a 0 0 0 4509 4870 250 351 978 1754 268 576 3846 4128 c 0 0 0 17107 9705 34881 5715 3792 30330 30520 1147 18433 11110 g 0 0 0 11110 18433 1147 30520 30330 3792 5715 34881 9705 17107 t 0 0 0 4128 3846 576 268 1754 978 351 250 4870 4509

MA0131.3_rc_shift4 (HINFP_rc)
; oligos_6nt_mkv4_m3 versus MA0131.3_rc (HINFP_rc); m=1/2; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.583634; ----GCGGACGy- ; cor=; Ncor= a 0 0 0 0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 0 c 0 0 0 0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 0 g 0 0 0 0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 0 t 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 0

MA1721.2_shift0 (ZNF93)
; oligos_6nt_mkv4_m3 versus MA1721.2 (ZNF93); m=2/2; ncol2=14; w=-3; offset=-3; strand=D; shift=0; score=0.51061; gGyrkCrGCAGCG ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift1 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -ssCGmGCGss ; Alignment reference a 0 3796 3555 730 199 13654 555 593 342 2929 3804 c 0 10187 8999 23151 457 7014 978 24686 1475 11936 7796 g 0 8780 11678 2251 25572 3792 24633 692 24381 8031 11847 t 0 3853 2384 484 388 2156 450 645 418 3720 3169

MA0632.3_shift0 (TCFL5)
; oligos_6nt_mkv4_m2 versus MA0632.3 (TCFL5); m=1/9; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.50485; kCrCGCGC--- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0

MA1959.2_shift4 (KLF7)
; oligos_6nt_mkv4_m2 versus MA1959.2 (KLF7); m=2/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.490307; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0

MA1513.2_rc_shift4 (KLF15_rc)
; oligos_6nt_mkv4_m2 versus MA1513.2_rc (KLF15_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.489252; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0

MA2126.1_shift4 (Zfp961)
; oligos_6nt_mkv4_m2 versus MA2126.1 (Zfp961); m=4/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.47311; ----GGGCGCC ; cor=; Ncor= a 0 0 0 0 18.0 13.0 11.0 8.0 23.0 12.0 9.0 c 0 0 0 0 20.0 22.0 13.0 1219.0 8.0 1367.0 1353.0 g 0 0 0 0 1372.0 1312.0 1278.0 9.0 1372.0 23.0 30.0 t 0 0 0 0 8.0 71.0 116.0 182.0 15.0 16.0 26.0

MA1650.2_rc_shift4 (ZBTB14_rc)
; oligos_6nt_mkv4_m2 versus MA1650.2_rc (ZBTB14_rc); m=5/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.472593; ----GTGCGCG ; cor=; Ncor= a 0 0 0 0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 c 0 0 0 0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 g 0 0 0 0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 t 0 0 0 0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0

MA1713.2_rc_shift3 (ZNF610_rc)
; oligos_6nt_mkv4_m2 versus MA1713.2_rc (ZNF610_rc); m=6/9; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.46982; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0

MA1515.2_rc_shift4 (KLF2_rc)
; oligos_6nt_mkv4_m2 versus MA1515.2_rc (KLF2_rc); m=7/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.46288; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 c 0 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 g 0 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 t 0 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0

MA0493.3_shift4 (KLF1)
; oligos_6nt_mkv4_m2 versus MA0493.3 (KLF1); m=8/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.451451; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 c 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 g 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 t 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0

MA1516.2_rc_shift4 (KLF3_rc)
; oligos_6nt_mkv4_m2 versus MA1516.2_rc (KLF3_rc); m=9/9; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.410316; ----GGGCGyG ; cor=; Ncor= a 0 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 c 0 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 g 0 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 t 0 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift1 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=16; shift=1; ncol=17; -ssCtGGGCaGGGCass ; Alignment reference a 0 1487 1329 301 711 204 419 324 435 5875 299 426 415 511 4441 1191 1602 c 0 2788 2612 7584 1001 530 653 562 7570 1059 504 595 388 7306 1482 2673 2255 g 0 3118 3383 722 1240 7798 7309 7721 635 1084 7754 7491 7786 717 1897 3729 3561 t 0 1437 1506 223 5878 298 449 223 190 812 273 318 241 296 1010 1237 1412

MA1979.2_shift0 (ZNF416)
; oligos_6nt_mkv4_m4 versus MA1979.2 (ZNF416); m=1/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.477111; TaTCTGGGCa------- ; cor=; Ncor= a 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 0 0 0 0 0 0 c 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 0 0 0 0 0 0 g 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 0 0 0 0 0 0 t 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0 0 0 0 0 0 0

MA0599.1_rc_shift4 (KLF5_rc)
; oligos_6nt_mkv4_m4 versus MA0599.1_rc (KLF5_rc); m=2/14; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.474488; ----dGGGyGKGGc--- ; cor=; Ncor= a 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 0 c 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 0 g 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 0 t 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0 0

MA2328.1_rc_shift7 (ZBED4_rc)
; oligos_6nt_mkv4_m4 versus MA2328.1_rc (ZBED4_rc); m=3/14; ncol2=10; w=0; offset=6; strand=R; shift=7; score=0.470035; -------GCGGrGCGgG ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 0 0 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 0 0 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 0 0 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0

MA0597.3_shift7 (THAP1)
; oligos_6nt_mkv4_m4 versus MA0597.3 (THAP1); m=4/14; ncol2=8; w=0; offset=6; strand=D; shift=7; score=0.467395; -------gcAGGGCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 477.0 553.0 4731.0 22.0 40.0 91.0 98.0 4900.0 0 0 c 0 0 0 0 0 0 0 966.0 3351.0 219.0 127.0 183.0 67.0 4861.0 95.0 0 0 g 0 0 0 0 0 0 0 3186.0 933.0 220.0 4958.0 4893.0 4942.0 104.0 172.0 0 0 t 0 0 0 0 0 0 0 549.0 341.0 8.0 71.0 62.0 78.0 115.0 11.0 0 0

MA0742.2_shift4 (KLF12)
; oligos_6nt_mkv4_m4 versus MA0742.2 (KLF12); m=5/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.450788; ----GGGGCGGGG---- ; cor=; Ncor= a 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0

MA0740.2_shift4 (KLF14)
; oligos_6nt_mkv4_m4 versus MA0740.2 (KLF14); m=6/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.45016; ----kGGGCGKGG---- ; cor=; Ncor= a 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0

MA0685.2_shift4 (SP4)
; oligos_6nt_mkv4_m4 versus MA0685.2 (SP4); m=7/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.443194; ----gGGGMGGrG---- ; cor=; Ncor= a 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0

MA1511.2_shift4 (KLF10)
; oligos_6nt_mkv4_m4 versus MA1511.2 (KLF10); m=8/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.431645; ----GGGGCGKGG---- ; cor=; Ncor= a 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0

MA0516.3_shift4 (SP2)
; oligos_6nt_mkv4_m4 versus MA0516.3 (SP2); m=9/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.427293; ----GGGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0

MA1513.2_rc_shift5 (KLF15_rc)
; oligos_6nt_mkv4_m4 versus MA1513.2_rc (KLF15_rc); m=10/14; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.422258; -----GGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0

MA0079.5_shift4 (SP1)
; oligos_6nt_mkv4_m4 versus MA0079.5 (SP1); m=11/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.413526; ----GGGGMGGrG---- ; cor=; Ncor= a 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0

MA1959.2_shift5 (KLF7)
; oligos_6nt_mkv4_m4 versus MA1959.2 (KLF7); m=12/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.413264; -----GGGCGKgG---- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0

MA2125.1_rc_shift1 (Zfp809_rc)
; oligos_6nt_mkv4_m4 versus MA2125.1_rc (Zfp809_rc); m=13/14; ncol2=9; w=0; offset=0; strand=R; shift=1; score=0.40711; -gGCTGGGAw------- ; cor=; Ncor= a 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 1578.0 690.0 0 0 0 0 0 0 0 c 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 23.0 81.0 0 0 0 0 0 0 0 g 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 41.0 66.0 0 0 0 0 0 0 0 t 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0 23.0 828.0 0 0 0 0 0 0 0

MA0493.3_shift5 (KLF1)
; oligos_6nt_mkv4_m4 versus MA0493.3 (KLF1); m=14/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.403702; -----GGGyGkGG---- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -ssgCttGGCaGCCGCss ; Alignment reference a 0 968 1100 537 189 305 269 242 149 216 3768 178 232 444 327 194 956 789 c 0 2073 1848 1200 5220 978 1354 731 357 5186 1012 400 5210 4544 386 5171 1987 1792 g 0 1986 2022 3541 349 1161 992 4753 5311 446 829 5231 392 534 4923 406 1943 2440 t 0 953 1010 702 222 3536 3365 254 163 132 371 171 146 458 344 209 1094 959

MA0048.3_rc_shift8 (NHLH1_rc)
; positions_7nt_m2 versus MA0048.3_rc (NHLH1_rc); m=1/3; ncol2=9; w=0; offset=7; strand=R; shift=8; score=0.411905; --------GCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 0 0 0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 0 0 0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 0 0 0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA1599.2_rc_shift0 (ZNF682_rc)
; positions_7nt_m2 versus MA1599.2_rc (ZNF682_rc); m=2/3; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.404945; GGGGCTTrGCC------- ; cor=; Ncor= a 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 0 0 0 0 0 0 0 c 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 0 0 0 0 0 0 0 g 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 0 0 0 0 0 0 0 t 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 0 0 0 0 0 0 0

MA1721.2_shift7 (ZNF93)
; positions_7nt_m2 versus MA1721.2 (ZNF93); m=3/3; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.401757; -------gGyrkCrGCAG ; cor=; Ncor= a 0 0 0 0 0 0 0 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 c 0 0 0 0 0 0 0 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 g 0 0 0 0 0 0 0 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 t 0 0 0 0 0 0 0 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)
; positions_6nt_m3; m=0 (reference); ncol1=14; shift=0; ncol=14; awAcATATATgTwt ; Alignment reference a 4863 3175 10539 1420 11163 1114 9757 1021 9453 467 2247 619 4059 3027 c 1852 2994 433 8000 252 922 573 847 709 316 531 607 1970 2456 g 2456 1970 607 531 316 709 847 573 922 252 8000 433 2994 1852 t 3027 4059 619 2247 467 9453 1021 9757 1114 11163 1420 10539 3175 4863

MA0461.3_shift1 (Atoh1)
; positions_6nt_m3 versus MA0461.3 (Atoh1); m=1/1; ncol2=8; w=0; offset=1; strand=D; shift=1; score=0.41037; -rmCATATG----- ; cor=; Ncor= a 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 0 0 0 0 0 c 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 0 0 0 0 0 g 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 0 0 0 0 0 t 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; ssCGGAGCGss ; Alignment reference a 4147 4438 1172 1364 367 21283 250 1459 1420 4414 4612 c 10528 8928 24624 1253 1638 3017 484 25020 3468 9858 8095 g 9825 11285 1860 24938 26377 3567 27654 1289 21877 10412 11854 t 4085 3934 929 1030 203 718 197 817 1820 3901 4024
MA2328.1_rc_shift1 (ZBED4_rc)				; oligos_6nt_mkv4_m5 versus MA2328.1_rc (ZBED4_rc); m=1/10; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.803779; -GCGGrGCGgG ; cor=; Ncor= a 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0
MA1713.2_rc_shift3 (ZNF610_rc)				; oligos_6nt_mkv4_m5 versus MA1713.2_rc (ZNF610_rc); m=2/10; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.546507; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0
MA0079.5_shift3 (SP1)				; oligos_6nt_mkv4_m5 versus MA0079.5 (SP1); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.508049; ---GGGGMGGr ; cor=; Ncor= a 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 c 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 g 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 t 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101
MA1511.2_shift3 (KLF10)				; oligos_6nt_mkv4_m5 versus MA1511.2 (KLF10); m=4/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.505353; ---GGGGCGKG ; cor=; Ncor= a 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 c 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 g 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 t 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699
MA0742.2_shift3 (KLF12)				; oligos_6nt_mkv4_m5 versus MA0742.2 (KLF12); m=5/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.500732; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 c 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 g 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 t 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351
MA0516.3_shift3 (SP2)				; oligos_6nt_mkv4_m5 versus MA0516.3 (SP2); m=6/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484759; ---GGGGCGGG ; cor=; Ncor= a 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 c 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 g 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 t 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138
MA0740.2_shift3 (KLF14)				; oligos_6nt_mkv4_m5 versus MA0740.2 (KLF14); m=7/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.484072; ---kGGGCGKG ; cor=; Ncor= a 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 c 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 g 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 t 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877
MA0685.2_shift3 (SP4)				; oligos_6nt_mkv4_m5 versus MA0685.2 (SP4); m=8/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.480706; ---gGGGMGGr ; cor=; Ncor= a 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 c 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 g 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 t 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374
MA1959.2_shift4 (KLF7)				; oligos_6nt_mkv4_m5 versus MA1959.2 (KLF7); m=9/10; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.429877; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0
MA1513.2_rc_shift4 (KLF15_rc)				; oligos_6nt_mkv4_m5 versus MA1513.2_rc (KLF15_rc); m=10/10; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.429673; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wtATTTTTAww ; Alignment reference a 0 0 0 0 14257 12595 44664 2652 3292 2079 3039 4231 44303 16467 17323 c 0 0 0 0 7692 10974 1930 1691 1606 1549 2434 2302 1972 8249 9121 g 0 0 0 0 10772 8367 2187 1880 1831 1128 1899 1548 1846 9367 7532 t 0 0 0 0 18363 19148 2303 44861 44355 46328 43712 43003 2963 17001 17108
MA0052.5_rc_shift4 (MEF2A_rc)				; oligos_7nt_mkv5_m1 versus MA0052.5_rc (MEF2A_rc); m=1/46; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.780703; ----CTATTTTTAg- ; cor=; Ncor= a 0 0 0 0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 0 c 0 0 0 0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 0 g 0 0 0 0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 0 t 0 0 0 0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 0
MA2124.1_shift6 (Hmga1)				; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=2/46; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.725245; ------ATTTTTAw- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0
MA0773.1_rc_shift3 (MEF2D_rc)				; oligos_7nt_mkv5_m1 versus MA0773.1_rc (MEF2D_rc); m=3/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.700558; ---kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0
MA0497.2_rc_shift3 (MEF2C_rc)				; oligos_7nt_mkv5_m1 versus MA0497.2_rc (MEF2C_rc); m=4/46; ncol2=11; w=-1; offset=-1; strand=R; shift=3; score=0.683648; ---kCTATTTTTrg- ; cor=; Ncor= a 0 0 0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 0 c 0 0 0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 0 g 0 0 0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 0 t 0 0 0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 0
MA0660.1_rc_shift3 (MEF2B_rc)				; oligos_7nt_mkv5_m1 versus MA0660.1_rc (MEF2B_rc); m=5/46; ncol2=12; w=-1; offset=-1; strand=R; shift=3; score=0.682548; ---kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0
MA1125.2_rc_shift4 (ZNF384_rc)				; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=6/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.558678; ----ttTTTTTT--- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0
MA0148.5_rc_shift6 (FOXA1_rc)				; oligos_7nt_mkv5_m1 versus MA0148.5_rc (FOXA1_rc); m=7/46; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.537241; ------ATGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 0 c 0 0 0 0 0 0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 0 g 0 0 0 0 0 0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 0 t 0 0 0 0 0 0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 0
MA0108.3_rc_shift8 (TBP_rc)				; oligos_7nt_mkv5_m1 versus MA0108.3_rc (TBP_rc); m=8/46; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.531171; --------wTWTATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 121.0 6.0 121.0 30.0 374.0 35.0 309.0 c 0 0 0 0 0 0 0 0 44.0 20.0 0.0 5.0 2.0 2.0 18.0 g 0 0 0 0 0 0 0 0 2.0 3.0 0.0 0.0 10.0 0.0 46.0 t 0 0 0 0 0 0 0 0 222.0 360.0 268.0 354.0 3.0 352.0 16.0
MA1563.2_rc_shift4 (SOX18_rc)				; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=9/46; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.527056; ----bhATTGTt--- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0
MA0047.4_rc_shift7 (FOXA2_rc)				; oligos_7nt_mkv5_m1 versus MA0047.4_rc (FOXA2_rc); m=10/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.523683; -------TGTTTACw ; cor=; Ncor= a 0 0 0 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 c 0 0 0 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 g 0 0 0 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 t 0 0 0 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0
MA2118.1_rc_shift7 (FOXS1_rc)				; oligos_7nt_mkv5_m1 versus MA2118.1_rc (FOXS1_rc); m=11/46; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.517049; -------TGTTTACa ; cor=; Ncor= a 0 0 0 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 c 0 0 0 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 g 0 0 0 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 t 0 0 0 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0
MA0032.2_rc_shift6 (FOXC1_rc)				; oligos_7nt_mkv5_m1 versus MA0032.2_rc (FOXC1_rc); m=12/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.511243; ------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0
MA0845.1_rc_shift6 (FOXB1_rc)				; oligos_7nt_mkv5_m1 versus MA0845.1_rc (FOXB1_rc); m=13/46; ncol2=11; w=0; offset=2; strand=R; shift=6; score=0.49745; ------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0
MA0033.2_rc_shift7 (FOXL1_rc)				; oligos_7nt_mkv5_m1 versus MA0033.2_rc (FOXL1_rc); m=14/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.487399; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0
MA0901.3_rc_shift8 (HOXB13_rc)				; oligos_7nt_mkv5_m1 versus MA0901.3_rc (HOXB13_rc); m=15/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.484683; --------TTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 0 0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 0 0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 0 0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0
MA1606.2_rc_shift7 (Foxf1_rc)				; oligos_7nt_mkv5_m1 versus MA1606.2_rc (Foxf1_rc); m=16/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.478886; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 c 0 0 0 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 g 0 0 0 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 t 0 0 0 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0
MA0913.3_rc_shift8 (HOXD9_rc)				; oligos_7nt_mkv5_m1 versus MA0913.3_rc (HOXD9_rc); m=17/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.47261; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0
MA0899.2_rc_shift8 (HOXA10_rc)				; oligos_7nt_mkv5_m1 versus MA0899.2_rc (HOXA10_rc); m=18/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.468723; --------tTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0
MA1103.3_rc_shift7 (FOXK2_rc)				; oligos_7nt_mkv5_m1 versus MA1103.3_rc (FOXK2_rc); m=19/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.467094; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 c 0 0 0 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 g 0 0 0 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 t 0 0 0 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0
MA1473.2_rc_shift8 (CDX4_rc)				; oligos_7nt_mkv5_m1 versus MA1473.2_rc (CDX4_rc); m=20/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.46642; --------tTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0
MA0481.4_rc_shift7 (FOXP1_rc)				; oligos_7nt_mkv5_m1 versus MA0481.4_rc (FOXP1_rc); m=21/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464603; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 c 0 0 0 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 g 0 0 0 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 t 0 0 0 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0
MA0868.3_rc_shift5 (SOX8_rc)				; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=22/46; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.464153; -----yATTGTT--- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0
MA0031.2_rc_shift7 (FOXD1_rc)				; oligos_7nt_mkv5_m1 versus MA0031.2_rc (FOXD1_rc); m=23/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.464036; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0
MA0848.1_rc_shift7 (FOXO4_rc)				; oligos_7nt_mkv5_m1 versus MA0848.1_rc (FOXO4_rc); m=24/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.463267; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0
MA0042.2_rc_shift7 (FOXI1_rc)				; oligos_7nt_mkv5_m1 versus MA0042.2_rc (FOXI1_rc); m=25/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462816; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0
MA1683.2_rc_shift7 (FOXA3_rc)				; oligos_7nt_mkv5_m1 versus MA1683.2_rc (FOXA3_rc); m=26/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.462789; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 c 0 0 0 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 g 0 0 0 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 t 0 0 0 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0
MA2117.1_rc_shift7 (FOXP4_rc)				; oligos_7nt_mkv5_m1 versus MA2117.1_rc (FOXP4_rc); m=27/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.459429; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 c 0 0 0 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 g 0 0 0 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 t 0 0 0 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0
MA0852.3_rc_shift7 (FOXK1_rc)				; oligos_7nt_mkv5_m1 versus MA0852.3_rc (FOXK1_rc); m=28/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456679; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 c 0 0 0 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 g 0 0 0 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 t 0 0 0 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0
MA0850.1_rc_shift7 (FOXP3_rc)				; oligos_7nt_mkv5_m1 versus MA0850.1_rc (FOXP3_rc); m=29/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456436; -------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0
MA0157.4_rc_shift7 (Foxo3_rc)				; oligos_7nt_mkv5_m1 versus MA0157.4_rc (Foxo3_rc); m=30/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.456047; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 c 0 0 0 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 g 0 0 0 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 t 0 0 0 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0
MA0849.1_rc_shift7 (FOXO6_rc)				; oligos_7nt_mkv5_m1 versus MA0849.1_rc (FOXO6_rc); m=31/46; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.453778; -------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0
MA0601.2_shift8 (Arid3b)				; oligos_7nt_mkv5_m1 versus MA0601.2 (Arid3b); m=32/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447254; --------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0
MA0619.2_shift8 (LIN54)				; oligos_7nt_mkv5_m1 versus MA0619.2 (LIN54); m=33/46; ncol2=7; w=0; offset=4; strand=D; shift=8; score=0.447239; --------TTTrAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 c 0 0 0 0 0 0 0 0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 999.0 999.0 788.0 0.0 0.0 0.0 685.0
MA0878.3_rc_shift8 (CDX1_rc)				; oligos_7nt_mkv5_m1 versus MA0878.3_rc (CDX1_rc); m=34/46; ncol2=10; w=0; offset=4; strand=R; shift=8; score=0.443001; --------TTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 854.0 0.0 29.0 230.0 8617.0 0.0 355.0 c 0 0 0 0 0 0 0 0 754.0 0.0 97.0 0.0 0.0 344.0 0.0 g 0 0 0 0 0 0 0 0 1418.0 0.0 72.0 56.0 0.0 0.0 3795.0 t 0 0 0 0 0 0 0 0 7199.0 8617.0 8617.0 8617.0 0.0 8617.0 4822.0
MA0757.2_rc_shift0 (ONECUT3_rc)				; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=35/46; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.441202; tTATyGATTTTt--- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0
MA1607.2_rc_shift7 (Foxl2_rc)				; oligos_7nt_mkv5_m1 versus MA1607.2_rc (Foxl2_rc); m=36/46; ncol2=10; w=0; offset=3; strand=R; shift=7; score=0.436214; -------TGTTTACA ; cor=; Ncor= a 0 0 0 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 c 0 0 0 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 g 0 0 0 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 t 0 0 0 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0
MA0907.2_rc_shift8 (HOXC13_rc)				; oligos_7nt_mkv5_m1 versus MA0907.2_rc (HOXC13_rc); m=37/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.433776; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0
MA0905.2_rc_shift8 (HOXC10_rc)				; oligos_7nt_mkv5_m1 versus MA0905.2_rc (HOXC10_rc); m=38/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.427605; --------tTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0
MA0908.2_rc_shift8 (HOXD11_rc)				; oligos_7nt_mkv5_m1 versus MA0908.2_rc (HOXD11_rc); m=39/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.42637; --------tTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 230.0 230.0 230.0 175.0 8.0 68.0 16.0
MA0485.3_rc_shift8 (HOXC9_rc)				; oligos_7nt_mkv5_m1 versus MA0485.3_rc (HOXC9_rc); m=40/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.420922; --------TTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0
MA0151.1_rc_shift9 (Arid3a_rc)				; oligos_7nt_mkv5_m1 versus MA0151.1_rc (Arid3a_rc); m=41/46; ncol2=6; w=0; offset=5; strand=R; shift=9; score=0.415824; ---------TTTrAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 t 0 0 0 0 0 0 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0
MA1503.2_rc_shift8 (HOXB9_rc)				; oligos_7nt_mkv5_m1 versus MA1503.2_rc (HOXB9_rc); m=42/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.415501; --------tTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0
MA0909.4_rc_shift9 (Hoxd13_rc)				; oligos_7nt_mkv5_m1 versus MA0909.4_rc (Hoxd13_rc); m=43/46; ncol2=7; w=0; offset=5; strand=R; shift=9; score=0.412869; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 c 0 0 0 0 0 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 g 0 0 0 0 0 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 t 0 0 0 0 0 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0
MA0650.4_rc_shift9 (Hoxa13_rc)				; oligos_7nt_mkv5_m1 versus MA0650.4_rc (Hoxa13_rc); m=44/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.411922; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 247.0 212.0 832.0 16662.0 929.0 1439.0 c 0 0 0 0 0 0 0 0 0 145.0 98.0 407.0 232.0 666.0 146.0 g 0 0 0 0 0 0 0 0 0 306.0 125.0 205.0 249.0 243.0 1594.0 t 0 0 0 0 0 0 0 0 0 16550.0 16813.0 15804.0 105.0 15410.0 14069.0
MA0911.2_rc_shift8 (Hoxa11_rc)				; oligos_7nt_mkv5_m1 versus MA0911.2_rc (Hoxa11_rc); m=45/46; ncol2=9; w=0; offset=4; strand=R; shift=8; score=0.410005; --------tTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 0 704.0 704.0 704.0 489.0 14.0 250.0 30.0
MA0465.3_rc_shift9 (CDX2_rc)				; oligos_7nt_mkv5_m1 versus MA0465.3_rc (CDX2_rc); m=46/46; ncol2=8; w=0; offset=5; strand=R; shift=9; score=0.404557; ---------TTTATT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 804.0 666.0 1045.0 30975.0 459.0 1810.0 c 0 0 0 0 0 0 0 0 0 502.0 366.0 999.0 386.0 1196.0 184.0 g 0 0 0 0 0 0 0 0 0 595.0 349.0 761.0 391.0 414.0 3312.0 t 0 0 0 0 0 0 0 0 0 30125.0 30645.0 29221.0 274.0 29957.0 26720.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCtCgss ; Alignment reference a 0 0 0 2391 2623 447 409 474 684 352 1013 255 1266 2121 2608 c 0 0 0 9671 7499 19833 620 18867 16303 18433 2890 19765 4274 9655 8592 g 0 0 0 6340 8452 614 19580 1112 3586 2131 4922 950 14070 6666 7016 t 0 0 0 2875 2703 383 668 824 704 361 12452 307 1667 2835 3061
MA0733.2_shift4 (EGR4)				; oligos_7nt_mkv5_m3 versus MA0733.2 (EGR4); m=1/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.728418; ----mCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0
MA0732.2_shift4 (EGR3)				; oligos_7nt_mkv5_m3 versus MA0732.2 (EGR3); m=2/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.719175; ----mCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0
MA0472.2_shift4 (EGR2)				; oligos_7nt_mkv5_m3 versus MA0472.2 (EGR2); m=3/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.703682; ----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0
MA0162.5_shift4 (EGR1)				; oligos_7nt_mkv5_m3 versus MA0162.5 (EGR1); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.702654; ----mCGCCCACgC- ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0
MA1564.2_shift2 (SP9)				; oligos_7nt_mkv5_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.570122; --cCmCGCCCmc--- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0 0
MA1512.2_shift2 (KLF11)				; oligos_7nt_mkv5_m3 versus MA1512.2 (KLF11); m=6/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.545948; --cCACGCCCmC--- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_7nt_mkv5_m3 versus MA0742.2_rc (KLF12_rc); m=7/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.520956; --CCCCGCCCC---- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0 0
MA0746.3_shift1 (SP3)				; oligos_7nt_mkv5_m3 versus MA0746.3 (SP3); m=8/24; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.510847; -rCCACGCCCmC--- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0 0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_7nt_mkv5_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.507513; --CCMCGCCCm---- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_7nt_mkv5_m3 versus MA0685.2_rc (SP4_rc); m=10/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.507333; --CyCCKCCCc---- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_7nt_mkv5_m3 versus MA1511.2_rc (KLF10_rc); m=11/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.506709; --CCMCGCCCC---- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_7nt_mkv5_m3 versus MA0516.3_rc (SP2_rc); m=12/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.501458; --cCCCGCCCC---- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0 0
MA0741.1_shift1 (KLF16)				; oligos_7nt_mkv5_m3 versus MA0741.1 (KLF16); m=13/24; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.499108; -gmCMCgCCCMC--- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_7nt_mkv5_m3 versus MA1959.2_rc (KLF7_rc); m=14/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.498872; --CcMCGCCC----- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0 0
MA1517.2_shift2 (KLF6)				; oligos_7nt_mkv5_m3 versus MA1517.2 (KLF6); m=15/24; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.492853; --cCACRCCCm---- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0
MA1513.2_shift2 (KLF15)				; oligos_7nt_mkv5_m3 versus MA1513.2 (KLF15); m=16/24; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.487325; --cCCCGCCC----- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_7nt_mkv5_m3 versus MA0079.5_rc (SP1_rc); m=17/24; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.483552; --CyCCKCCCC---- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_7nt_mkv5_m3 versus MA1961.2_rc (PATZ1_rc); m=18/24; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.474528; -sCCCCkCCCCs--- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_7nt_mkv5_m3 versus MA1515.2 (KLF2); m=19/24; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.471508; --CCmCrCCC----- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0 0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_7nt_mkv5_m3 versus MA0493.3_rc (KLF1_rc); m=20/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.465791; --CCmCrCCC----- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0 0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_7nt_mkv5_m3 versus MA2126.1_rc (Zfp961_rc); m=21/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.460494; --TGGCGCCC----- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0 0
MA0599.1_shift1 (KLF5)				; oligos_7nt_mkv5_m3 versus MA0599.1 (KLF5); m=22/24; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.45675; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA0748.3_rc_shift4 (YY2_rc)				; oligos_7nt_mkv5_m3 versus MA0748.3_rc (YY2_rc); m=23/24; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.418895; ----CCGCCAT---- ; cor=; Ncor= a 0 0 0 0 303.0 79.0 186.0 101.0 27.0 5248.0 36.0 0 0 0 0 c 0 0 0 0 4474.0 5231.0 25.0 5376.0 5509.0 125.0 359.0 0 0 0 0 g 0 0 0 0 516.0 330.0 5384.0 101.0 120.0 273.0 46.0 0 0 0 0 t 0 0 0 0 411.0 64.0 109.0 126.0 48.0 58.0 5263.0 0 0 0 0
MA1516.2_shift0 (KLF3)				; oligos_7nt_mkv5_m3 versus MA1516.2 (KLF3); m=24/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.418273; grCCrCGCCC----- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m2_shift3 (oligos_7nt_mkv5_m2)				; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCCCgss ; Alignment reference a 0 0 0 4064 3832 847 844 833 848 927 1061 1091 2753 3753 4002 c 0 0 0 17323 16148 34228 575 32573 29928 28599 29983 31669 7154 17815 16802 g 0 0 0 11270 13293 1285 34377 2236 5120 6244 4931 3252 24236 11652 12013 t 0 0 0 4289 3673 586 1150 1304 1050 1176 971 934 2803 3726 4129
MA0732.2_shift4 (EGR3)				; oligos_7nt_mkv5_m2 versus MA0732.2 (EGR3); m=1/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.722721; ----mCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0
MA0733.2_shift4 (EGR4)				; oligos_7nt_mkv5_m2 versus MA0733.2 (EGR4); m=2/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.712632; ----mCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0
MA0162.5_shift4 (EGR1)				; oligos_7nt_mkv5_m2 versus MA0162.5 (EGR1); m=3/36; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.692645; ----mCGCCCACgC- ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0
MA0472.2_shift4 (EGR2)				; oligos_7nt_mkv5_m2 versus MA0472.2 (EGR2); m=4/36; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.678829; ----mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0
MA1627.2_shift4 (Wt1)				; oligos_7nt_mkv5_m2 versus MA1627.2 (Wt1); m=5/36; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.605825; ----cCTCCCCCAC- ; cor=; Ncor= a 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 0 c 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 0 g 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 0 t 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0 0
MA1564.2_shift2 (SP9)				; oligos_7nt_mkv5_m2 versus MA1564.2 (SP9); m=6/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.591507; --cCmCGCCCmc--- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0 0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_7nt_mkv5_m2 versus MA0742.2_rc (KLF12_rc); m=7/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.572646; --CCCCGCCCC---- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_7nt_mkv5_m2 versus MA1511.2_rc (KLF10_rc); m=8/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.571305; --CCMCGCCCC---- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0 0
MA0079.5_rc_shift2 (SP1_rc)				; oligos_7nt_mkv5_m2 versus MA0079.5_rc (SP1_rc); m=9/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.57081; --CyCCKCCCC---- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0 0
MA0747.2_shift2 (SP8)				; oligos_7nt_mkv5_m2 versus MA0747.2 (SP8); m=10/36; ncol2=11; w=-1; offset=-1; strand=D; shift=2; score=0.563903; --mCACgCCCmCy-- ; cor=; Ncor= a 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 c 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 g 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 t 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0
MA1512.2_shift2 (KLF11)				; oligos_7nt_mkv5_m2 versus MA1512.2 (KLF11); m=11/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.562829; --cCACGCCCmC--- ; cor=; Ncor= a 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_7nt_mkv5_m2 versus MA0516.3_rc (SP2_rc); m=12/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.559978; --cCCCGCCCC---- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0 0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_7nt_mkv5_m2 versus MA0740.2_rc (KLF14_rc); m=13/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.555153; --CCMCGCCCm---- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_7nt_mkv5_m2 versus MA0685.2_rc (SP4_rc); m=14/36; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.551578; --CyCCKCCCc---- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0 0
MA1630.3_rc_shift2 (ZNF281_rc)				; oligos_7nt_mkv5_m2 versus MA1630.3_rc (ZNF281_rc); m=15/36; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.551233; --CCCCTCCCCC--- ; cor=; Ncor= a 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 0 0 c 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 0 0 g 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 0 0 t 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0 0 0
MA0741.1_shift1 (KLF16)				; oligos_7nt_mkv5_m2 versus MA0741.1 (KLF16); m=16/36; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.551033; -gmCMCgCCCMC--- ; cor=; Ncor= a 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0
MA1102.3_rc_shift6 (CTCFL_rc)				; oligos_7nt_mkv5_m2 versus MA1102.3_rc (CTCFL_rc); m=17/36; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.540706; ------GCCCCCTG- ; cor=; Ncor= a 0 0 0 0 0 0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 0 c 0 0 0 0 0 0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 0 g 0 0 0 0 0 0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 0 t 0 0 0 0 0 0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 0
MA1961.2_rc_shift1 (PATZ1_rc)				; oligos_7nt_mkv5_m2 versus MA1961.2_rc (PATZ1_rc); m=18/36; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.538691; -sCCCCkCCCCs--- ; cor=; Ncor= a 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 0 0 c 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 0 0 g 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 0 0 t 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0 0 0
MA0746.3_shift1 (SP3)				; oligos_7nt_mkv5_m2 versus MA0746.3 (SP3); m=19/36; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.530123; -rCCACGCCCmC--- ; cor=; Ncor= a 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 0 0 c 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 0 0 g 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 0 0 t 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0 0 0
MA0155.1_rc_shift5 (INSM1_rc)				; oligos_7nt_mkv5_m2 versus MA0155.1_rc (INSM1_rc); m=20/36; ncol2=12; w=0; offset=2; strand=R; shift=5; score=0.514755; -----ygmCCCCwkr ; cor=; Ncor= a 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 c 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 g 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 t 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0
MA1653.2_shift2 (ZNF148)				; oligos_7nt_mkv5_m2 versus MA1653.2 (ZNF148); m=21/36; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.504202; --CCCCTCCCcc--- ; cor=; Ncor= a 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 c 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 g 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 t 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_7nt_mkv5_m2 versus MA1959.2_rc (KLF7_rc); m=22/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.503623; --CcMCGCCC----- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0 0 0
MA1513.2_shift2 (KLF15)				; oligos_7nt_mkv5_m2 versus MA1513.2 (KLF15); m=23/36; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.496628; --cCCCGCCC----- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0 0
MA0139.2_rc_shift4 (CTCF_rc)				; oligos_7nt_mkv5_m2 versus MA0139.2_rc (CTCF_rc); m=24/36; ncol2=15; w=0; offset=1; strand=R; shift=4; score=0.490064; ----syGCCmyCTrs ; cor=; Ncor= a 0 0 0 0 37.0 17.0 67.0 71.0 8.0 341.0 9.0 3.0 18.0 324.0 11.0 c 0 0 0 0 307.0 507.0 5.0 775.0 890.0 504.0 566.0 903.0 32.0 48.0 334.0 g 0 0 0 0 482.0 13.0 733.0 8.0 0.0 12.0 3.0 0.0 11.0 433.0 528.0 t 0 0 0 0 82.0 372.0 104.0 56.0 12.0 54.0 333.0 5.0 851.0 107.0 40.0
MA1517.2_shift2 (KLF6)				; oligos_7nt_mkv5_m2 versus MA1517.2 (KLF6); m=25/36; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.477573; --cCACRCCCm---- ; cor=; Ncor= a 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_7nt_mkv5_m2 versus MA0493.3_rc (KLF1_rc); m=26/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.470107; --CCmCrCCC----- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_7nt_mkv5_m2 versus MA1515.2 (KLF2); m=27/36; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.469817; --CCmCrCCC----- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0 0 0
MA1548.2_shift4 (PLAGL2)				; oligos_7nt_mkv5_m2 versus MA1548.2 (PLAGL2); m=28/36; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.466732; ----GGGCCCCC--- ; cor=; Ncor= a 0 0 0 0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 c 0 0 0 0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 g 0 0 0 0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 t 0 0 0 0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0
MA0599.1_shift1 (KLF5)				; oligos_7nt_mkv5_m2 versus MA0599.1 (KLF5); m=29/36; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.458893; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA0753.3_shift7 (ZNF740)				; oligos_7nt_mkv5_m2 versus MA0753.3 (ZNF740); m=30/36; ncol2=10; w=0; offset=4; strand=D; shift=7; score=0.456417; -------CCCCCCCC ; cor=; Ncor= a 0 0 0 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 c 0 0 0 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 g 0 0 0 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 t 0 0 0 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_7nt_mkv5_m2 versus MA2126.1_rc (Zfp961_rc); m=31/36; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.451205; --TGGCGCCC----- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0 0 0
MA1578.2_shift7 (VEZF1)				; oligos_7nt_mkv5_m2 versus MA1578.2 (VEZF1); m=32/36; ncol2=6; w=0; offset=4; strand=D; shift=7; score=0.414371; -------CCCCCC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0
MA1516.2_shift0 (KLF3)				; oligos_7nt_mkv5_m2 versus MA1516.2 (KLF3); m=33/36; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.412991; grCCrCGCCC----- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0 0 0
MA0039.5_shift8 (KLF4)				; oligos_7nt_mkv5_m2 versus MA0039.5 (KLF4); m=34/36; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.410211; --------CCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0
MA1713.2_shift1 (ZNF610)				; oligos_7nt_mkv5_m2 versus MA1713.2 (ZNF610); m=35/36; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.409649; -scGCCGCTCC---- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0 0 0
MA1522.2_shift8 (MAZ)				; oligos_7nt_mkv5_m2 versus MA1522.2 (MAZ); m=36/36; ncol2=8; w=0; offset=5; strand=D; shift=8; score=0.402532; --------CCCCTCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 c 0 0 0 0 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 g 0 0 0 0 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 t 0 0 0 0 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ssCGGCCCGss ; Alignment reference a 0 4639 4281 1031 1932 605 439 520 1420 1087 4604 5305 c 0 15820 13706 32008 3533 3658 32581 31692 30617 2714 13014 12535 g 0 10449 12994 1799 28576 30724 2430 2652 2576 30984 14046 13556 t 0 4981 4908 1051 1848 902 439 1025 1276 1104 4225 4493
MA2328.1_shift1 (ZBED4)				; oligos_7nt_mkv5_m5 versus MA2328.1 (ZBED4); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.66465; -CcCGCyCCGC- ; cor=; Ncor= a 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0
MA1513.2_shift1 (KLF15)				; oligos_7nt_mkv5_m5 versus MA1513.2 (KLF15); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.56218; -cCCCGCCC--- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1959.2_rc_shift1 (KLF7_rc)				; oligos_7nt_mkv5_m5 versus MA1959.2_rc (KLF7_rc); m=3/10; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.530425; -CcMCGCCC--- ; cor=; Ncor= a 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1728.2_shift1 (ZNF549)				; oligos_7nt_mkv5_m5 versus MA1728.2 (ZNF549); m=4/10; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.512978; -TGCTGCCC--- ; cor=; Ncor= a 0 483.0 72.0 50.0 229.0 28.0 55.0 106.0 183.0 0 0 0 c 0 349.0 161.0 4622.0 175.0 80.0 4364.0 4435.0 4133.0 0 0 0 g 0 498.0 4489.0 77.0 128.0 4566.0 177.0 98.0 75.0 0 0 0 t 0 3497.0 105.0 78.0 4295.0 153.0 231.0 188.0 436.0 0 0 0
MA0079.5_rc_shift0 (SP1_rc)				; oligos_7nt_mkv5_m5 versus MA0079.5_rc (SP1_rc); m=5/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.496096; CyCCKCCCC--- ; cor=; Ncor= a 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0
MA1511.2_rc_shift0 (KLF10_rc)				; oligos_7nt_mkv5_m5 versus MA1511.2_rc (KLF10_rc); m=6/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.493592; CCMCGCCCC--- ; cor=; Ncor= a 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0
MA0742.2_rc_shift0 (KLF12_rc)				; oligos_7nt_mkv5_m5 versus MA0742.2_rc (KLF12_rc); m=7/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.488013; CCCCGCCCC--- ; cor=; Ncor= a 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0
MA0516.3_rc_shift0 (SP2_rc)				; oligos_7nt_mkv5_m5 versus MA0516.3_rc (SP2_rc); m=8/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.474171; cCCCGCCCC--- ; cor=; Ncor= a 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0
MA0740.2_rc_shift0 (KLF14_rc)				; oligos_7nt_mkv5_m5 versus MA0740.2_rc (KLF14_rc); m=9/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.472542; CCMCGCCCm--- ; cor=; Ncor= a 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0
MA0685.2_rc_shift0 (SP4_rc)				; oligos_7nt_mkv5_m5 versus MA0685.2_rc (SP4_rc); m=10/10; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.468893; CyCCKCCCc--- ; cor=; Ncor= a 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 0 c 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 0 g 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 t 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGGCtGCGss ; Alignment reference a 0 0 0 3074 2716 794 792 558 414 775 469 594 1166 2755 2976 c 0 0 0 8848 6386 20775 1624 1327 21919 3947 1322 21439 3085 8024 8987 g 0 0 0 8643 11960 1509 20646 21088 1136 5423 21556 1084 18188 10068 8620 t 0 0 0 3174 2677 661 677 766 270 13594 392 622 1300 2892 3156
MA1721.2_shift0 (ZNF93)				; oligos_7nt_mkv5_m4 versus MA1721.2 (ZNF93); m=1/7; ncol2=14; w=-3; offset=-3; strand=D; shift=0; score=0.59329; gGyrkCrGCAGCGG- ; cor=; Ncor= a 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 19.0 340.0 72.0 0 c 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 2292.0 138.0 134.0 0 g 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 33.0 1784.0 2145.0 0 t 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0 44.0 126.0 37.0 0
MA0048.3_rc_shift4 (NHLH1_rc)				; oligos_7nt_mkv5_m4 versus MA0048.3_rc (NHLH1_rc); m=2/7; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.567642; ----GCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA1529.2_shift0 (NHLH2)				; oligos_7nt_mkv5_m4 versus MA1529.2 (NHLH2); m=3/7; ncol2=16; w=-3; offset=-3; strand=D; shift=0; score=0.551442; gGyMGCAGCTGCGyC ; cor=; Ncor= a 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 c 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 g 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 t 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0
MA0500.3_shift4 (MYOG)				; oligos_7nt_mkv5_m4 versus MA0500.3 (MYOG); m=4/7; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.484246; ----rCAGCTGy--- ; cor=; Ncor= a 0 0 0 0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 0 0 0 c 0 0 0 0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 0 0 0 g 0 0 0 0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 0 0 0 t 0 0 0 0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 0 0 0
MA1100.3_shift4 (ASCL1)				; oligos_7nt_mkv5_m4 versus MA1100.3 (ASCL1); m=5/7; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.46788; ----rCAGCTGc--- ; cor=; Ncor= a 0 0 0 0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 0 0 0 c 0 0 0 0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 0 0 0 g 0 0 0 0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 0 0 0 t 0 0 0 0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 0 0 0
MA1713.2_rc_shift1 (ZNF610_rc)				; oligos_7nt_mkv5_m4 versus MA1713.2_rc (ZNF610_rc); m=6/7; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.43223; -GGAGCGGCgs---- ; cor=; Ncor= a 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 293.0 250.0 0 0 0 0 c 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 392.0 738.0 0 0 0 0 g 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 1347.0 1222.0 0 0 0 0 t 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0 354.0 176.0 0 0 0 0
MA1583.2_rc_shift3 (ZFP57_rc)				; oligos_7nt_mkv5_m4 versus MA1583.2_rc (ZFP57_rc); m=7/7; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.414406; ---TGCGGCA----- ; cor=; Ncor= a 0 0 0 156.0 187.0 59.0 7.0 36.0 24.0 6143.0 0 0 0 0 0 c 0 0 0 729.0 279.0 6166.0 719.0 16.0 6213.0 140.0 0 0 0 0 0 g 0 0 0 331.0 5828.0 16.0 5595.0 6254.0 71.0 37.0 0 0 0 0 0 t 0 0 0 5116.0 38.0 91.0 11.0 26.0 24.0 12.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCcCGss ; Alignment reference a 0 0 0 4657 5308 275 963 978 2156 225 511 3532 5045 c 0 0 0 16270 11482 34656 645 30153 24740 32366 1737 16452 11879 g 0 0 0 10762 15785 1055 34376 3580 7014 3296 33918 11798 14594 t 0 0 0 4776 3890 479 481 1754 2555 578 299 4683 4947
MA0162.5_shift4 (EGR1)				; oligos_6nt_mkv4_m1 versus MA0162.5 (EGR1); m=1/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.586389; ----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0
MA1564.2_shift2 (SP9)				; oligos_6nt_mkv4_m1 versus MA1564.2 (SP9); m=2/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.586216; --cCmCGCCCmc- ; cor=; Ncor= a 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA1959.2_rc_shift2 (KLF7_rc)				; oligos_6nt_mkv4_m1 versus MA1959.2_rc (KLF7_rc); m=3/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.577906; --CcMCGCCC--- ; cor=; Ncor= a 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA0131.3_shift4 (HINFP)				; oligos_6nt_mkv4_m1 versus MA0131.3 (HINFP); m=4/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.573013; ----rCGTCCGC- ; cor=; Ncor= a 0 0 0 0 276.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0 c 0 0 0 0 45.0 388.0 14.0 0.0 404.0 413.0 31.0 395.0 0 g 0 0 0 0 217.0 97.0 484.0 0.0 13.0 0.0 472.0 15.0 0 t 0 0 0 0 17.0 7.0 10.0 470.0 0.0 3.0 21.0 12.0 0
MA1513.2_shift2 (KLF15)				; oligos_6nt_mkv4_m1 versus MA1513.2 (KLF15); m=5/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.564741; --cCCCGCCC--- ; cor=; Ncor= a 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1515.2_shift2 (KLF2)				; oligos_6nt_mkv4_m1 versus MA1515.2 (KLF2); m=6/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.548766; --CCmCrCCC--- ; cor=; Ncor= a 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA2126.1_rc_shift2 (Zfp961_rc)				; oligos_6nt_mkv4_m1 versus MA2126.1_rc (Zfp961_rc); m=7/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.546038; --TGGCGCCC--- ; cor=; Ncor= a 0 0 61.0 26.0 16.0 15.0 182.0 116.0 71.0 8.0 0 0 0 c 0 0 69.0 30.0 23.0 1372.0 9.0 1278.0 1312.0 1372.0 0 0 0 g 0 0 74.0 1353.0 1367.0 8.0 1219.0 13.0 22.0 20.0 0 0 0 t 0 0 1214.0 9.0 12.0 23.0 8.0 11.0 13.0 18.0 0 0 0
MA0493.3_rc_shift2 (KLF1_rc)				; oligos_6nt_mkv4_m1 versus MA0493.3_rc (KLF1_rc); m=8/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.536887; --CCmCrCCC--- ; cor=; Ncor= a 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA0742.2_rc_shift2 (KLF12_rc)				; oligos_6nt_mkv4_m1 versus MA0742.2_rc (KLF12_rc); m=9/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.536654; --CCCCGCCCC-- ; cor=; Ncor= a 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA0733.2_shift4 (EGR4)				; oligos_6nt_mkv4_m1 versus MA0733.2 (EGR4); m=10/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.534311; ----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0
MA0740.2_rc_shift2 (KLF14_rc)				; oligos_6nt_mkv4_m1 versus MA0740.2_rc (KLF14_rc); m=11/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.528721; --CCMCGCCCm-- ; cor=; Ncor= a 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA1511.2_rc_shift2 (KLF10_rc)				; oligos_6nt_mkv4_m1 versus MA1511.2_rc (KLF10_rc); m=12/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.522703; --CCMCGCCCC-- ; cor=; Ncor= a 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_6nt_mkv4_m1 versus MA0685.2_rc (SP4_rc); m=13/19; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.512405; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA1516.2_shift0 (KLF3)				; oligos_6nt_mkv4_m1 versus MA1516.2 (KLF3); m=14/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.47977; grCCrCGCCC--- ; cor=; Ncor= a 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0
MA0632.3_rc_shift6 (TCFL5_rc)				; oligos_6nt_mkv4_m1 versus MA0632.3_rc (TCFL5_rc); m=15/19; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.477468; ------GCGCGyG ; cor=; Ncor= a 0 0 0 0 0 0 635.0 0.0 15451.0 0.0 1643.0 9359.0 0.0 c 0 0 0 0 0 0 4594.0 72543.0 0.0 72543.0 0.0 29710.0 0.0 g 0 0 0 0 0 0 72543.0 657.0 57092.0 0.0 72543.0 0.0 72543.0 t 0 0 0 0 0 0 1593.0 3520.0 1765.0 1566.0 0.0 72543.0 0.0
MA1727.2_rc_shift2 (ZNF417_rc)				; oligos_6nt_mkv4_m1 versus MA1727.2_rc (ZNF417_rc); m=16/19; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.461691; --TGGCGCC---- ; cor=; Ncor= a 0 0 1.0 13.0 7.0 1.0 55.0 1.0 1.0 0 0 0 0 c 0 0 1.0 1.0 1.0 996.0 1.0 996.0 996.0 0 0 0 0 g 0 0 13.0 954.0 990.0 1.0 936.0 1.0 1.0 0 0 0 0 t 0 0 984.0 31.0 1.0 1.0 7.0 1.0 1.0 0 0 0 0
MA1650.2_shift2 (ZBTB14)				; oligos_6nt_mkv4_m1 versus MA1650.2 (ZBTB14); m=17/19; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.453905; --CCGCGCAC--- ; cor=; Ncor= a 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 0 0 c 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 0 0 g 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 0 0 t 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv4_m1 versus MA1122.2_rc (TFDP1_rc); m=18/19; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.417394; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0
MA0471.3_rc_shift1 (E2F6_rc)				; oligos_6nt_mkv4_m1 versus MA0471.3_rc (E2F6_rc); m=19/19; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.415448; -TTCCCGCC---- ; cor=; Ncor= a 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift1 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -ssCGmGCGss ; Alignment reference a 0 3796 3555 730 199 13654 555 593 342 2929 3804 c 0 10187 8999 23151 457 7014 978 24686 1475 11936 7796 g 0 8780 11678 2251 25572 3792 24633 692 24381 8031 11847 t 0 3853 2384 484 388 2156 450 645 418 3720 3169
MA0632.3_shift0 (TCFL5)				; oligos_6nt_mkv4_m2 versus MA0632.3 (TCFL5); m=1/9; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.50485; kCrCGCGC--- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0
MA1959.2_shift4 (KLF7)				; oligos_6nt_mkv4_m2 versus MA1959.2 (KLF7); m=2/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.490307; ----GGGCGKg ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 c 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 g 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 t 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0
MA1513.2_rc_shift4 (KLF15_rc)				; oligos_6nt_mkv4_m2 versus MA1513.2_rc (KLF15_rc); m=3/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.489252; ----GGGCGGG ; cor=; Ncor= a 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 c 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 g 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 t 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0
MA2126.1_shift4 (Zfp961)				; oligos_6nt_mkv4_m2 versus MA2126.1 (Zfp961); m=4/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.47311; ----GGGCGCC ; cor=; Ncor= a 0 0 0 0 18.0 13.0 11.0 8.0 23.0 12.0 9.0 c 0 0 0 0 20.0 22.0 13.0 1219.0 8.0 1367.0 1353.0 g 0 0 0 0 1372.0 1312.0 1278.0 9.0 1372.0 23.0 30.0 t 0 0 0 0 8.0 71.0 116.0 182.0 15.0 16.0 26.0
MA1650.2_rc_shift4 (ZBTB14_rc)				; oligos_6nt_mkv4_m2 versus MA1650.2_rc (ZBTB14_rc); m=5/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.472593; ----GTGCGCG ; cor=; Ncor= a 0 0 0 0 123.0 0.0 52.0 67.0 82.0 62.0 59.0 c 0 0 0 0 651.0 10.0 261.0 4043.0 319.0 4098.0 155.0 g 0 0 0 0 3674.0 37.0 4178.0 305.0 4078.0 294.0 4292.0 t 0 0 0 0 99.0 4500.0 56.0 132.0 68.0 93.0 41.0
MA1713.2_rc_shift3 (ZNF610_rc)				; oligos_6nt_mkv4_m2 versus MA1713.2_rc (ZNF610_rc); m=6/9; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.46982; ---GGAGCGGC ; cor=; Ncor= a 0 0 0 101.0 3.0 2289.0 4.0 11.0 15.0 20.0 79.0 c 0 0 0 186.0 62.0 45.0 21.0 2312.0 41.0 84.0 2118.0 g 0 0 0 1976.0 2315.0 34.0 2357.0 45.0 2312.0 2245.0 121.0 t 0 0 0 123.0 6.0 18.0 4.0 18.0 18.0 37.0 68.0
MA1515.2_rc_shift4 (KLF2_rc)				; oligos_6nt_mkv4_m2 versus MA1515.2_rc (KLF2_rc); m=7/9; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.46288; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 444.0 9.0 22.0 167.0 78.0 214.0 312.0 c 0 0 0 0 105.0 195.0 49.0 2920.0 0.0 1060.0 186.0 g 0 0 0 0 4622.0 4622.0 4622.0 274.0 4622.0 2265.0 4622.0 t 0 0 0 0 68.0 128.0 0.0 1702.0 0.0 4622.0 403.0
MA0493.3_shift4 (KLF1)				; oligos_6nt_mkv4_m2 versus MA0493.3 (KLF1); m=8/9; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.451451; ----GGGyGkG ; cor=; Ncor= a 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 c 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 g 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 t 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0
MA1516.2_rc_shift4 (KLF3_rc)				; oligos_6nt_mkv4_m2 versus MA1516.2_rc (KLF3_rc); m=9/9; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.410316; ----GGGCGyG ; cor=; Ncor= a 0 0 0 0 1218.0 0.0 0.0 1212.0 1409.0 419.0 335.0 c 0 0 0 0 48.0 29.0 31.0 43259.0 21.0 16503.0 248.0 g 0 0 0 0 43259.0 43259.0 43259.0 334.0 43259.0 707.0 43259.0 t 0 0 0 0 77.0 83.0 202.0 4245.0 2261.0 26757.0 298.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=16; shift=1; ncol=17; -ssCtGGGCaGGGCass ; Alignment reference a 0 1487 1329 301 711 204 419 324 435 5875 299 426 415 511 4441 1191 1602 c 0 2788 2612 7584 1001 530 653 562 7570 1059 504 595 388 7306 1482 2673 2255 g 0 3118 3383 722 1240 7798 7309 7721 635 1084 7754 7491 7786 717 1897 3729 3561 t 0 1437 1506 223 5878 298 449 223 190 812 273 318 241 296 1010 1237 1412
MA1979.2_shift0 (ZNF416)				; oligos_6nt_mkv4_m4 versus MA1979.2 (ZNF416); m=1/14; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.477111; TaTCTGGGCa------- ; cor=; Ncor= a 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 0 0 0 0 0 0 c 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 0 0 0 0 0 0 g 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 0 0 0 0 0 0 t 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0 0 0 0 0 0 0
MA0599.1_rc_shift4 (KLF5_rc)				; oligos_6nt_mkv4_m4 versus MA0599.1_rc (KLF5_rc); m=2/14; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.474488; ----dGGGyGKGGc--- ; cor=; Ncor= a 0 0 0 0 4101.0 476.0 0.0 0.0 3378.0 0.0 565.0 1603.0 1711.0 2587.0 0 0 0 c 0 0 0 0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 7572.0 0 0 0 g 0 0 0 0 5595.0 13135.0 13611.0 13611.0 0.0 13611.0 9569.0 12008.0 11900.0 2023.0 0 0 0 t 0 0 0 0 3915.0 0.0 0.0 0.0 5051.0 0.0 3477.0 0.0 0.0 1429.0 0 0 0
MA2328.1_rc_shift7 (ZBED4_rc)				; oligos_6nt_mkv4_m4 versus MA2328.1_rc (ZBED4_rc); m=3/14; ncol2=10; w=0; offset=6; strand=R; shift=7; score=0.470035; -------GCGGrGCGgG ; cor=; Ncor= a 0 0 0 0 0 0 0 17.0 39.0 21.0 14.0 230.0 7.0 21.0 20.0 150.0 60.0 c 0 0 0 0 0 0 0 35.0 580.0 23.0 34.0 28.0 26.0 608.0 62.0 65.0 80.0 g 0 0 0 0 0 0 0 589.0 19.0 604.0 598.0 391.0 621.0 14.0 549.0 419.0 479.0 t 0 0 0 0 0 0 0 19.0 22.0 12.0 14.0 11.0 6.0 17.0 29.0 26.0 41.0
MA0597.3_shift7 (THAP1)				; oligos_6nt_mkv4_m4 versus MA0597.3 (THAP1); m=4/14; ncol2=8; w=0; offset=6; strand=D; shift=7; score=0.467395; -------gcAGGGCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 477.0 553.0 4731.0 22.0 40.0 91.0 98.0 4900.0 0 0 c 0 0 0 0 0 0 0 966.0 3351.0 219.0 127.0 183.0 67.0 4861.0 95.0 0 0 g 0 0 0 0 0 0 0 3186.0 933.0 220.0 4958.0 4893.0 4942.0 104.0 172.0 0 0 t 0 0 0 0 0 0 0 549.0 341.0 8.0 71.0 62.0 78.0 115.0 11.0 0 0
MA0742.2_shift4 (KLF12)				; oligos_6nt_mkv4_m4 versus MA0742.2 (KLF12); m=5/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.450788; ----GGGGCGGGG---- ; cor=; Ncor= a 0 0 0 0 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0 0 0 0 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 0 0 0 0 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 0 0 0 0 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0
MA0740.2_shift4 (KLF14)				; oligos_6nt_mkv4_m4 versus MA0740.2 (KLF14); m=6/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.45016; ----kGGGCGKGG---- ; cor=; Ncor= a 0 0 0 0 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0 0 0 0 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 0 0 0 0 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 0 0 0 0 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0
MA0685.2_shift4 (SP4)				; oligos_6nt_mkv4_m4 versus MA0685.2 (SP4); m=7/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.443194; ----gGGGMGGrG---- ; cor=; Ncor= a 0 0 0 0 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 0 0 0 0 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 0 0 0 0 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0
MA1511.2_shift4 (KLF10)				; oligos_6nt_mkv4_m4 versus MA1511.2 (KLF10); m=8/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.431645; ----GGGGCGKGG---- ; cor=; Ncor= a 0 0 0 0 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0 0 0 0 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 0 0 0 0 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 0 0 0 0 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0
MA0516.3_shift4 (SP2)				; oligos_6nt_mkv4_m4 versus MA0516.3 (SP2); m=9/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.427293; ----GGGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0 0 0 0 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 0 0 0 0 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 0 0 0 0 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0
MA1513.2_rc_shift5 (KLF15_rc)				; oligos_6nt_mkv4_m4 versus MA1513.2_rc (KLF15_rc); m=10/14; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.422258; -----GGGCGGGg---- ; cor=; Ncor= a 0 0 0 0 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 0 0 0 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 0 0 0 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 0 0 0 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0
MA0079.5_shift4 (SP1)				; oligos_6nt_mkv4_m4 versus MA0079.5 (SP1); m=11/14; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.413526; ----GGGGMGGrG---- ; cor=; Ncor= a 0 0 0 0 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 0 0 0 0 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 0 0 0 0 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 0 0 0 0 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0
MA1959.2_shift5 (KLF7)				; oligos_6nt_mkv4_m4 versus MA1959.2 (KLF7); m=12/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.413264; -----GGGCGKgG---- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 0 0 0 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 0 0 0 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0
MA2125.1_rc_shift1 (Zfp809_rc)				; oligos_6nt_mkv4_m4 versus MA2125.1_rc (Zfp809_rc); m=13/14; ncol2=9; w=0; offset=0; strand=R; shift=1; score=0.40711; -gGCTGGGAw------- ; cor=; Ncor= a 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 1578.0 690.0 0 0 0 0 0 0 0 c 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 23.0 81.0 0 0 0 0 0 0 0 g 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 41.0 66.0 0 0 0 0 0 0 0 t 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0 23.0 828.0 0 0 0 0 0 0 0
MA0493.3_shift5 (KLF1)				; oligos_6nt_mkv4_m4 versus MA0493.3 (KLF1); m=14/14; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.403702; -----GGGyGkGG---- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 0 0 0 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 0 0 0 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=17; shift=1; ncol=18; -ssgCttGGCaGCCGCss ; Alignment reference a 0 968 1100 537 189 305 269 242 149 216 3768 178 232 444 327 194 956 789 c 0 2073 1848 1200 5220 978 1354 731 357 5186 1012 400 5210 4544 386 5171 1987 1792 g 0 1986 2022 3541 349 1161 992 4753 5311 446 829 5231 392 534 4923 406 1943 2440 t 0 953 1010 702 222 3536 3365 254 163 132 371 171 146 458 344 209 1094 959
MA0048.3_rc_shift8 (NHLH1_rc)				; positions_7nt_m2 versus MA0048.3_rc (NHLH1_rc); m=1/3; ncol2=9; w=0; offset=7; strand=R; shift=8; score=0.411905; --------GCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 0 0 0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 0 0 0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 0 0 0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0
MA1599.2_rc_shift0 (ZNF682_rc)				; positions_7nt_m2 versus MA1599.2_rc (ZNF682_rc); m=2/3; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.404945; GGGGCTTrGCC------- ; cor=; Ncor= a 64.0 7.0 11.0 33.0 7.0 6.0 13.0 358.0 58.0 36.0 89.0 0 0 0 0 0 0 0 c 32.0 10.0 9.0 13.0 1038.0 22.0 20.0 55.0 105.0 877.0 774.0 0 0 0 0 0 0 0 g 896.0 1034.0 1033.0 999.0 7.0 31.0 72.0 597.0 795.0 42.0 85.0 0 0 0 0 0 0 0 t 66.0 7.0 5.0 13.0 6.0 999.0 953.0 48.0 100.0 103.0 110.0 0 0 0 0 0 0 0
MA1721.2_shift7 (ZNF93)				; positions_7nt_m2 versus MA1721.2 (ZNF93); m=3/3; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.401757; -------gGyrkCrGCAG ; cor=; Ncor= a 0 0 0 0 0 0 0 467.0 175.0 117.0 1455.0 61.0 38.0 1001.0 18.0 23.0 1659.0 30.0 c 0 0 0 0 0 0 0 279.0 233.0 1120.0 177.0 114.0 2278.0 92.0 26.0 2279.0 96.0 20.0 g 0 0 0 0 0 0 0 1499.0 1857.0 211.0 663.0 1483.0 22.0 1263.0 2334.0 42.0 576.0 2328.0 t 0 0 0 0 0 0 0 143.0 123.0 940.0 93.0 730.0 50.0 32.0 10.0 44.0 57.0 10.0