; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: taatga	1 assembled patterns	length 6
;alignt	rev_cpl	score
taatga	tcatta	37.97
taatga	tcatta	37.97	best consensus

; assembly # 2	seed: acaatg	2 assembled patterns	length 7
;alignt	rev_cpl	score
acaatg.	.cattgt	35.54
.caatgg	ccattg.	4.83
acaatgg	ccattgt	35.54	best consensus

; assembly # 3	seed: ccaatc	1 assembled patterns	length 6
;alignt	rev_cpl	score
ccaatc	gattgg	33.02
ccaatc	gattgg	33.02	best consensus

; assembly # 4	seed: cccctc	3 assembled patterns	length 8
; alignt	 rev_cpl	score
cccctc..	..gagggg	22.63
.ccctcc.	.ggaggg.	6.50
..cctccc	gggagg..	8.51
cccctccc	gggagggg	22.63	best consensus

; assembly # 5	seed: caaaag	2 assembled patterns	length 7
;alignt	rev_cpl	score
caaaag.	.cttttg	21.14
.aaaaga	tctttt.	4.06
caaaaga	tcttttg	21.14	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 90.
; Host name	rsat
; Job started	2026-01-05.143736
; Job done	2026-01-05.143738
; Seconds	1.68
;	user	1.69
;	system	0.01
;	cuser	0
;	csystem	0
