; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	12
;

; assembly # 1	seed: aaaaaaa	1 assembled patterns	length 7
;alignt	rev_cpl	score
aaaaaaa	ttttttt	8.84
aaaaaaa	ttttttt	8.84	best consensus

; assembly # 2	seed: tttaaaa	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
tttttaa...	...ttaaaaa	0.94
.ttttaaa..	..tttaaaa.	3.64
..tttaaaa.	.ttttaaa..	3.64
...ttaaaaa	tttttaa...	0.94
tttttaaaaa	tttttaaaaa	3.64	best consensus

; assembly # 3	seed: aacaatg	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
gaacaat..	..attgttc	2.77
.aacaatg.	.cattgtt.	3.22
..acaatgg	ccattgt..	2.64
gaacaatgg	ccattgttc	3.22	best consensus

; assembly # 4	seed: atttaaa	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
atttaaa..	..tttaaat	2.50
.tttaaaa.	.ttttaaa.	3.64
..ttaaaaa	tttttaa..	0.94
atttaaaaa	tttttaaat	3.64	best consensus

; assembly # 5	seed: acaatag	1 assembled patterns	length 7
;alignt	rev_cpl	score
acaatag	ctattgt	2.33
acaatag	ctattgt	2.33	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 3.
; Host name	rsat
; Job started	2026-01-05.143923
; Job done	2026-01-05.143923
; Seconds	0.29
;	user	0.29
;	system	0.02
;	cuser	0
;	csystem	0
