AC  assembly_1
XX
ID  atattttttaaaaaatat
XX
DE  nnATATTTTTTAAAAAATATnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         3.38      0.00      0.00      0.00
4         0.00      0.00      0.00      7.22
5        12.79      0.00      0.00      0.00
6         0.00      0.00      0.00     21.05
7         0.00      0.00      0.00     21.05
8         0.00      0.00      0.00     21.05
9         0.00      0.00      0.00     21.05
10        0.00      0.00      0.00     21.05
11        0.00      0.00      0.00     21.05
12       21.05      0.00      0.00      0.00
13       21.05      0.00      0.00      0.00
14       21.05      0.00      0.00      0.00
15       21.05      0.00      0.00      0.00
16       21.05      0.00      0.00      0.00
17       21.05      0.00      0.00      0.00
18        0.00      0.00      0.00     12.79
19        7.22      0.00      0.00      0.00
20        0.00      0.00      0.00      3.38
21        0.00      0.00      0.00      0.00
22        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: atattttttaaaaaatat
CC  asmb.seed: aaaaaa
CC  matrix.nb: 1
CC  sites: 13
CC  consensus.strict: --ATATTTTTTAAAAAATAT--
CC  consensus.strict.rc: --ATATTTTTTAAAAAATAT--
CC  consensus.IUPAC: nnATATTTTTTAAAAAATATnn
CC  consensus.IUPAC.rc: NNATATTTTTTAAAAAATATNN
CC  consensus.regexp: [acgt][acgt]ATATTTTTTAAAAAATAT[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]ATATTTTTTAAAAAATAT[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  gaacaatgg
XX
DE  nnGAACAATGgnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      3.20      0.00
4         4.93      0.00      0.00      0.00
5         9.45      0.00      0.00      0.00
6         0.00      9.45      0.00      0.00
7         9.45      0.00      0.00      0.00
8         9.45      0.00      0.00      0.00
9         0.00      0.00      0.00      9.45
10        0.00      0.00      9.45      0.00
11        0.00      0.00      1.14      0.00
12        0.00      0.00      0.00      0.00
13        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: gaacaatgg
CC  asmb.seed: acaatg
CC  matrix.nb: 2
CC  sites: 4
CC  consensus.strict: --GAACAATGg--
CC  consensus.strict.rc: --CCATTGTTC--
CC  consensus.IUPAC: nnGAACAATGgnn
CC  consensus.IUPAC.rc: NNCCATTGTTCNN
CC  consensus.regexp: [acgt][acgt]GAACAATGg[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]CCATTGTTC[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  acaaag
XX
DE  nnACAAAGnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         6.48      0.00      0.00      0.00
4         0.00      6.48      0.00      0.00
5         6.48      0.00      0.00      0.00
6         6.48      0.00      0.00      0.00
7         6.48      0.00      0.00      0.00
8         0.00      0.00      6.48      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: acaaag
CC  asmb.seed: acaaag
CC  matrix.nb: 3
CC  sites: 1
CC  consensus.strict: --ACAAAG--
CC  consensus.strict.rc: --CTTTGT--
CC  consensus.IUPAC: nnACAAAGnn
CC  consensus.IUPAC.rc: NNCTTTGTNN
CC  consensus.regexp: [acgt][acgt]ACAAAG[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]CTTTGT[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  atattttaaaaaatat
XX
DE  nnATATTTTAAAAAATATnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         3.38      0.00      0.00      0.00
4         0.00      0.00      0.00      7.22
5         7.22      0.00      0.00      0.00
6         0.00      0.00      0.00      7.22
7         0.00      0.00      0.00      7.22
8         0.00      0.00      0.00      7.22
9         0.00      0.00      0.00     10.26
10       21.05      0.00      0.00      0.00
11       21.05      0.00      0.00      0.00
12       21.05      0.00      0.00      0.00
13       21.05      0.00      0.00      0.00
14       21.05      0.00      0.00      0.00
15       21.05      0.00      0.00      0.00
16        0.00      0.00      0.00     12.79
17        7.22      0.00      0.00      0.00
18        0.00      0.00      0.00      3.38
19        0.00      0.00      0.00      0.00
20        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: atattttaaaaaatat
CC  asmb.seed: atttta
CC  matrix.nb: 4
CC  sites: 11
CC  consensus.strict: --ATATTTTAAAAAATAT--
CC  consensus.strict.rc: --ATATTTTTTAAAATAT--
CC  consensus.IUPAC: nnATATTTTAAAAAATATnn
CC  consensus.IUPAC.rc: NNATATTTTTTAAAATATNN
CC  consensus.regexp: [acgt][acgt]ATATTTTAAAAAATAT[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]ATATTTTTTAAAATAT[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  atattttttaaaaaagt
XX
DE  nnATATTTTTTAAAAAAGtnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         3.38      0.00      0.00      0.00
4         0.00      0.00      0.00      7.22
5        12.79      0.00      0.00      0.00
6         0.00      0.00      0.00     21.05
7         0.00      0.00      0.00     21.05
8         0.00      0.00      0.00     21.05
9         0.00      0.00      0.00     21.05
10        0.00      0.00      0.00     21.05
11        0.00      0.00      0.00     21.05
12       21.05      0.00      0.00      0.00
13       21.05      0.00      0.00      0.00
14       21.05      0.00      0.00      0.00
15       21.05      0.00      0.00      0.00
16       21.05      0.00      0.00      0.00
17       21.05      0.00      0.00      0.00
18        0.00      0.00      3.35      0.00
19        0.00      0.00      0.00      0.50
20        0.00      0.00      0.00      0.00
21        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: atattttttaaaaaagt
CC  asmb.seed: aaaaag
CC  matrix.nb: 5
CC  sites: 12
CC  consensus.strict: --ATATTTTTTAAAAAAGt--
CC  consensus.strict.rc: --ACTTTTTTAAAAAATAT--
CC  consensus.IUPAC: nnATATTTTTTAAAAAAGtnn
CC  consensus.IUPAC.rc: NNACTTTTTTAAAAAATATNN
CC  consensus.regexp: [acgt][acgt]ATATTTTTTAAAAAAGt[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]ACTTTTTTAAAAAATAT[ACGT][ACGT]
XX
//
