; compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
; Program version       	1.118
; Quick mode 
; Input files
;	file2 	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;	file1 	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
; Output files
;	match_table_txt	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
;	match_table_html	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
;	prefix       	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa
;	alignments_1ton_html	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
;	alignments_1ton	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
;	html_index   	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
; Matrices
;	file1	20 matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file1	1	10	6734
;		file1	2	11	6546
;		file1	3	10	1881
;		file1	4	12	10636
;		file1	5	11	6444
;		file1	6	22	1125
;		file1	7	13	4860
;		file1	8	10	4967
;		file1	9	20	2692
;		file1	10	21	1483
;		file1	11	12	10108
;		...	10 more matrices
;	file2	20 matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file2		1		10		6734
;		file2		2		11		6546
;		file2		3		10		1881
;		file2		4		12		10636
;		file2		5		11		6444
;		file2		6		22		1125
;		file2		7		13		4860
;		file2		8		10		4967
;		file2		9		20		2692
;		file2		10		21		1483
;		file2		11		12		10108
;		...	10 more matrices
; Column content
;	1	id1          	Identifier of the first matrix
;	2	id2          	Identifier of the second matrix
;	3	name1        	Name of the first matrix
;	4	name2        	Name of the second matrix
;	5	cor          	Pearson coefficient of correlation between frequency matrices
;	6	Ncor         	Normalized correlation. Ncor = cor * Wr
;	7	w1           	Width of the first matrix
;	8	w2           	Width of the second matrix
;	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
;	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
;	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
;	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
;	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
;	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
;	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
#id1	id2	name1	name2	cor	Ncor	w1	w2	w	W	Wr	wr1	wr2	strand	offset
oligos_7nt_mkv5_m5	oligos_7nt_mkv5_m5	oligos_7nt_mkv5_m5	oligos_7nt_mkv5_m5	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m3	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
positions_6nt_m2	positions_6nt_m2	positions_6nt_m2	positions_6nt_m2	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
positions_7nt_m4	positions_7nt_m4	positions_7nt_m4	positions_7nt_m4	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m2	oligos_6nt_mkv4_m2	oligos_6nt_mkv4_m2	oligos_6nt_mkv4_m2	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_7nt_m1	positions_7nt_m1	positions_7nt_m1	positions_7nt_m1	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m1	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
positions_7nt_m3	positions_7nt_m3	positions_7nt_m3	positions_7nt_m3	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m2	oligos_7nt_mkv5_m2	oligos_7nt_mkv5_m2	oligos_7nt_mkv5_m2	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_6nt_m3	positions_6nt_m3	positions_6nt_m3	positions_6nt_m3	1.000	1.000	10	10	10	10	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m3	oligos_6nt_mkv4_m3	oligos_6nt_mkv4_m3	oligos_6nt_mkv4_m3	1.000	1.000	10	10	10	10	1.0000	1.0000	1.0000	D	0
positions_6nt_m1	positions_6nt_m1	positions_6nt_m1	positions_6nt_m1	1.000	1.000	22	22	22	22	1.0000	1.0000	1.0000	D	0
positions_7nt_m2	positions_7nt_m2	positions_7nt_m2	positions_7nt_m2	1.000	1.000	14	14	14	14	1.0000	1.0000	1.0000	D	0
positions_7nt_m5	positions_7nt_m5	positions_7nt_m5	positions_7nt_m5	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m4	oligos_6nt_mkv4_m4	oligos_6nt_mkv4_m4	oligos_6nt_mkv4_m4	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m1	oligos_6nt_mkv4_m1	oligos_6nt_mkv4_m1	oligos_6nt_mkv4_m1	1.000	1.000	10	10	10	10	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m4	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m5	oligos_6nt_mkv4_m5	oligos_6nt_mkv4_m5	oligos_6nt_mkv4_m5	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
positions_6nt_m5	positions_6nt_m5	positions_6nt_m5	positions_6nt_m5	1.000	1.000	21	21	21	21	1.0000	1.0000	1.0000	D	0
positions_6nt_m4	positions_6nt_m4	positions_6nt_m4	positions_6nt_m4	1.000	1.000	20	20	20	20	1.0000	1.0000	1.0000	D	0
positions_6nt_m2	positions_7nt_m3	positions_6nt_m2	positions_7nt_m3	0.987	0.987	13	13	13	13	1.0000	1.0000	1.0000	D	0
positions_7nt_m3	positions_6nt_m2	positions_7nt_m3	positions_6nt_m2	0.987	0.987	13	13	13	13	1.0000	1.0000	1.0000	D	0
positions_6nt_m1	positions_6nt_m5	positions_6nt_m1	positions_6nt_m5	0.959	0.915	22	21	21	22	0.9545	0.9545	1.0000	D	0
positions_6nt_m5	positions_6nt_m1	positions_6nt_m5	positions_6nt_m1	0.959	0.915	21	22	21	22	0.9545	1.0000	0.9545	D	0
oligos_6nt_mkv4_m4	oligos_7nt_mkv5_m1	oligos_6nt_mkv4_m4	oligos_7nt_mkv5_m1	0.879	0.879	12	12	12	12	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m1	oligos_6nt_mkv4_m4	oligos_7nt_mkv5_m1	oligos_6nt_mkv4_m4	0.879	0.879	12	12	12	12	1.0000	1.0000	1.0000	D	0
positions_6nt_m4	positions_6nt_m5	positions_6nt_m4	positions_6nt_m5	0.911	0.867	20	21	20	21	0.9524	1.0000	0.9524	R	-1
positions_6nt_m5	positions_6nt_m4	positions_6nt_m5	positions_6nt_m4	0.911	0.867	21	20	20	21	0.9524	0.9524	1.0000	R	0
positions_7nt_m5	oligos_6nt_mkv4_m2	positions_7nt_m5	oligos_6nt_mkv4_m2	0.858	0.858	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv4_m2	positions_7nt_m5	oligos_6nt_mkv4_m2	positions_7nt_m5	0.858	0.858	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m3	0.845	0.845	12	12	12	12	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m4	0.845	0.845	12	12	12	12	1.0000	1.0000	1.0000	D	0
positions_6nt_m4	positions_6nt_m1	positions_6nt_m4	positions_6nt_m1	0.921	0.837	20	22	20	22	0.9091	1.0000	0.9091	R	-2
positions_6nt_m1	positions_6nt_m4	positions_6nt_m1	positions_6nt_m4	0.921	0.837	22	20	20	22	0.9091	0.9091	1.0000	R	0
positions_7nt_m2	positions_7nt_m4	positions_7nt_m2	positions_7nt_m4	0.854	0.793	14	13	13	14	0.9286	0.9286	1.0000	R	0
positions_7nt_m4	positions_7nt_m2	positions_7nt_m4	positions_7nt_m2	0.854	0.793	13	14	13	14	0.9286	1.0000	0.9286	R	-1
positions_6nt_m2	oligos_6nt_mkv4_m2	positions_6nt_m2	oligos_6nt_mkv4_m2	0.928	0.785	13	11	11	13	0.8462	0.8462	1.0000	D	2
oligos_6nt_mkv4_m2	positions_6nt_m2	oligos_6nt_mkv4_m2	positions_6nt_m2	0.928	0.785	11	13	11	13	0.8462	1.0000	0.8462	D	-2
positions_7nt_m3	oligos_6nt_mkv4_m2	positions_7nt_m3	oligos_6nt_mkv4_m2	0.915	0.774	13	11	11	13	0.8462	0.8462	1.0000	D	2
oligos_6nt_mkv4_m2	positions_7nt_m3	oligos_6nt_mkv4_m2	positions_7nt_m3	0.915	0.774	11	13	11	13	0.8462	1.0000	0.8462	D	-2
oligos_6nt_mkv4_m2	positions_6nt_m3	oligos_6nt_mkv4_m2	positions_6nt_m3	0.760	0.691	11	10	10	11	0.9091	0.9091	1.0000	D	0
positions_6nt_m3	oligos_6nt_mkv4_m2	positions_6nt_m3	oligos_6nt_mkv4_m2	0.760	0.691	10	11	10	11	0.9091	1.0000	0.9091	D	0
positions_7nt_m5	positions_7nt_m3	positions_7nt_m5	positions_7nt_m3	0.798	0.675	11	13	11	13	0.8462	1.0000	0.8462	D	-2
positions_7nt_m3	positions_7nt_m5	positions_7nt_m3	positions_7nt_m5	0.798	0.675	13	11	11	13	0.8462	0.8462	1.0000	D	2
positions_7nt_m5	positions_6nt_m2	positions_7nt_m5	positions_6nt_m2	0.780	0.660	11	13	11	13	0.8462	1.0000	0.8462	D	-2
positions_6nt_m2	positions_7nt_m5	positions_6nt_m2	positions_7nt_m5	0.780	0.660	13	11	11	13	0.8462	0.8462	1.0000	D	2
oligos_6nt_mkv4_m5	positions_7nt_m5	oligos_6nt_mkv4_m5	positions_7nt_m5	0.745	0.621	11	11	10	12	0.8333	0.9091	0.9091	D	-1
positions_7nt_m5	oligos_6nt_mkv4_m5	positions_7nt_m5	oligos_6nt_mkv4_m5	0.745	0.621	11	11	10	12	0.8333	0.9091	0.9091	D	1
positions_6nt_m5	positions_7nt_m2	positions_6nt_m5	positions_7nt_m2	0.920	0.614	21	14	14	21	0.6667	0.6667	1.0000	D	4
positions_7nt_m2	positions_6nt_m5	positions_7nt_m2	positions_6nt_m5	0.920	0.614	14	21	14	21	0.6667	1.0000	0.6667	D	-4
oligos_7nt_mkv5_m5	positions_7nt_m4	oligos_7nt_mkv5_m5	positions_7nt_m4	0.815	0.582	11	13	10	14	0.7143	0.9091	0.7692	R	1
positions_7nt_m4	oligos_7nt_mkv5_m5	positions_7nt_m4	oligos_7nt_mkv5_m5	0.815	0.582	13	11	10	14	0.7143	0.7692	0.9091	R	3
positions_6nt_m3	positions_6nt_m2	positions_6nt_m3	positions_6nt_m2	0.756	0.582	10	13	10	13	0.7692	1.0000	0.7692	D	-2
positions_6nt_m2	positions_6nt_m3	positions_6nt_m2	positions_6nt_m3	0.756	0.582	13	10	10	13	0.7692	0.7692	1.0000	D	2
positions_6nt_m4	positions_7nt_m2	positions_6nt_m4	positions_7nt_m2	0.825	0.577	20	14	14	20	0.7000	0.7000	1.0000	D	2
positions_7nt_m2	positions_6nt_m4	positions_7nt_m2	positions_6nt_m4	0.825	0.577	14	20	14	20	0.7000	1.0000	0.7000	D	-2
positions_6nt_m1	positions_7nt_m2	positions_6nt_m1	positions_7nt_m2	0.905	0.576	22	14	14	22	0.6364	0.6364	1.0000	D	4
positions_7nt_m2	positions_6nt_m1	positions_7nt_m2	positions_6nt_m1	0.905	0.576	14	22	14	22	0.6364	1.0000	0.6364	D	-4
positions_7nt_m3	positions_6nt_m3	positions_7nt_m3	positions_6nt_m3	0.728	0.560	13	10	10	13	0.7692	0.7692	1.0000	D	2
positions_6nt_m3	positions_7nt_m3	positions_6nt_m3	positions_7nt_m3	0.728	0.560	10	13	10	13	0.7692	1.0000	0.7692	D	-2
positions_7nt_m2	oligos_7nt_mkv5_m5	positions_7nt_m2	oligos_7nt_mkv5_m5	0.816	0.544	14	11	10	15	0.6667	0.7143	0.9091	D	-1
oligos_7nt_mkv5_m5	positions_7nt_m2	oligos_7nt_mkv5_m5	positions_7nt_m2	0.816	0.544	11	14	10	15	0.6667	0.9091	0.7143	D	1
positions_6nt_m4	positions_7nt_m4	positions_6nt_m4	positions_7nt_m4	0.779	0.506	20	13	13	20	0.6500	0.6500	1.0000	D	3
positions_7nt_m4	positions_6nt_m4	positions_7nt_m4	positions_6nt_m4	0.779	0.506	13	20	13	20	0.6500	1.0000	0.6500	D	-3
oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m1	0.844	0.506	12	12	9	15	0.6000	0.7500	0.7500	D	-3
oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m3	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m3	0.844	0.506	12	12	9	15	0.6000	0.7500	0.7500	D	3
positions_7nt_m4	positions_6nt_m5	positions_7nt_m4	positions_6nt_m5	0.793	0.491	13	21	13	21	0.6190	1.0000	0.6190	D	-5
positions_6nt_m5	positions_7nt_m4	positions_6nt_m5	positions_7nt_m4	0.793	0.491	21	13	13	21	0.6190	0.6190	1.0000	D	5
oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m1	0.800	0.480	12	12	9	15	0.6000	0.7500	0.7500	D	-3
oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m4	oligos_7nt_mkv5_m1	oligos_7nt_mkv5_m4	0.800	0.480	12	12	9	15	0.6000	0.7500	0.7500	D	3
positions_6nt_m1	positions_7nt_m4	positions_6nt_m1	positions_7nt_m4	0.783	0.463	22	13	13	22	0.5909	0.5909	1.0000	R	4
positions_7nt_m4	positions_6nt_m1	positions_7nt_m4	positions_6nt_m1	0.783	0.463	13	22	13	22	0.5909	1.0000	0.5909	R	-5
positions_6nt_m4	positions_7nt_m1	positions_6nt_m4	positions_7nt_m1	0.772	0.424	20	11	11	20	0.5500	0.5500	1.0000	D	8
positions_7nt_m1	positions_6nt_m4	positions_7nt_m1	positions_6nt_m4	0.772	0.424	11	20	11	20	0.5500	1.0000	0.5500	D	-8
positions_6nt_m4	oligos_7nt_mkv5_m5	positions_6nt_m4	oligos_7nt_mkv5_m5	0.743	0.409	20	11	11	20	0.5500	0.5500	1.0000	R	7
oligos_7nt_mkv5_m5	positions_6nt_m4	oligos_7nt_mkv5_m5	positions_6nt_m4	0.743	0.409	11	20	11	20	0.5500	1.0000	0.5500	R	-2
positions_6nt_m5	positions_7nt_m1	positions_6nt_m5	positions_7nt_m1	0.768	0.402	21	11	11	21	0.5238	0.5238	1.0000	R	1
positions_7nt_m1	positions_6nt_m5	positions_7nt_m1	positions_6nt_m5	0.768	0.402	11	21	11	21	0.5238	1.0000	0.5238	R	-9
; Host name	rsat
; Job started	2026-01-05.143941
; Job done	2026-01-05.144013
; Seconds	4.41
;	user	4.41
;	system	1.62
;	cuser	22.92
;	csystem	2.7
