; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: cccgccc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
ccccgcc.	.ggcgggg	2.82
.cccgccc	gggcggg.	14.57
ccccgccc	gggcgggg	14.57	best consensus

; assembly # 2	seed: acttccg	1 assembled patterns	length 7
;alignt	rev_cpl	score
acttccg	cggaagt	14.33
acttccg	cggaagt	14.33	best consensus

; assembly # 3	seed: cgccccc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
cgccccc.	.gggggcg	13.91
.gcccccg	cgggggc.	3.24
cgcccccg	cgggggcg	13.91	best consensus

; assembly # 4	seed: cgccctc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
cgccctc.	.gagggcg	13.71
.gccctcg	cgagggc.	3.22
cgccctcg	cgagggcg	13.71	best consensus

; assembly # 5	seed: attttta	1 assembled patterns	length 7
;alignt	rev_cpl	score
attttta	taaaaat	12.32
attttta	taaaaat	12.32	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 91.
; Host name	rsat
; Job started	2026-01-05.143752
; Job done	2026-01-05.143754
; Seconds	1.87
;	user	1.87
;	system	0
;	cuser	0
;	csystem	0
