; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	35
;

; assembly # 1	seed: aaaaaa	13 assembled patterns	length 18
;           alignt	           rev_cpl	score
atattt............	............aaatat	3.38
.tatttt...........	...........aaaata.	7.22
..attttt..........	..........aaaaat..	12.79
...tttttt.........	.........aaaaaa...	21.05
....ttttta........	........taaaaa....	10.26
.....ttttaa.......	.......ttaaaa.....	3.41
......tttaaa......	......tttaaa......	5.82
.......ttaaaa.....	.....ttttaa.......	3.41
........taaaaa....	....ttttta........	10.26
.........aaaaaa...	...tttttt.........	21.05
..........aaaaat..	..attttt..........	12.79
...........aaaata.	.tatttt...........	7.22
............aaatat	atattt............	3.38
atattttttaaaaaatat	atattttttaaaaaatat	21.05	best consensus

; assembly # 2	seed: acaatg	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
gaacaa...	...ttgttc	3.20
.aacaat..	..attgtt.	4.93
..acaatg.	.cattgt..	9.45
...caatgg	ccattg...	1.14
gaacaatgg	ccattgttc	9.45	best consensus

; assembly # 3	seed: acaaag	1 assembled patterns	length 6
;alignt	rev_cpl	score
acaaag	ctttgt	6.48
acaaag	ctttgt	6.48	best consensus

; assembly # 4	seed: atttta	11 assembled patterns	length 16
;         alignt	         rev_cpl	score
atattt..........	..........aaatat	3.38
.tatttt.........	.........aaaata.	7.22
..atttta........	........taaaat..	6.32
...ttttaa.......	.......ttaaaa...	3.41
....tttaaa......	......tttaaa....	5.82
.....ttaaaa.....	.....ttttaa.....	3.41
......taaaaa....	....ttttta......	10.26
.......aaaaaa...	...tttttt.......	21.05
........aaaaat..	..attttt........	12.79
.........aaaata.	.tatttt.........	7.22
..........aaatat	atattt..........	3.38
atattttaaaaaatat	atattttttaaaatat	21.05	best consensus

; assembly # 5	seed: aaaaag	12 assembled patterns	length 17
;          alignt	          rev_cpl	score
atattt...........	...........aaatat	3.38
.tatttt..........	..........aaaata.	7.22
..attttt.........	.........aaaaat..	12.79
...tttttt........	........aaaaaa...	21.05
....ttttta.......	.......taaaaa....	10.26
.....ttttaa......	......ttaaaa.....	3.41
......tttaaa.....	.....tttaaa......	5.82
.......ttaaaa....	....ttttaa.......	3.41
........taaaaa...	...ttttta........	10.26
.........aaaaaa..	..tttttt.........	21.05
..........aaaaag.	.cttttt..........	3.35
...........aaaagt	actttt...........	0.50
atattttttaaaaaagt	acttttttaaaaaatat	21.05	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 19.
; Host name	rsat
; Job started	2026-01-05.143835
; Job done	2026-01-05.143836
; Seconds	1
;	user	1.01
;	system	0.01
;	cuser	0
;	csystem	0
