/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
 Matrices
	file1	20 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	6734
		file1	2	11	6546
		file1	3	10	1881
		file1	4	12	10636
		file1	5	11	6444
		file1	6	22	1125
		file1	7	13	4860
		file1	8	10	4967
		file1	9	20	2692
		file1	10	21	1483
		file1	11	12	10108
		...	10 more matrices
	file2	20 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.143635_2026-01-05.143635_7Pttt5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		6734
		file2		2		11		6546
		file2		3		10		1881
		file2		4		12		10636
		file2		5		11		6444
		file2		6		22		1125
		file2		7		13		4860
		file2		8		10		4967
		file2		9		20		2692
		file2		10		21		1483
		file2		11		12		10108
		...	10 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m4 positions_7nt_m4 positions_7nt_m4 positions_7nt_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_7nt_m3 positions_7nt_m3 positions_7nt_m3 positions_7nt_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_7nt_m5 positions_7nt_m5 positions_7nt_m5 positions_7nt_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_7nt_m3 positions_6nt_m2 positions_7nt_m3 0.987 0.987 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m3 positions_6nt_m2 positions_7nt_m3 positions_6nt_m2 0.987 0.987 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 0.959 0.915 22 21 21 22 0.9545 0.9545 1.0000 D 0
positions_6nt_m5 positions_6nt_m1 positions_6nt_m5 positions_6nt_m1 0.959 0.915 21 22 21 22 0.9545 1.0000 0.9545 D 0
oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m1 0.879 0.879 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m4 oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m4 0.879 0.879 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m5 positions_6nt_m4 positions_6nt_m5 0.911 0.867 20 21 20 21 0.9524 1.0000 0.9524 R -1
positions_6nt_m5 positions_6nt_m4 positions_6nt_m5 positions_6nt_m4 0.911 0.867 21 20 20 21 0.9524 0.9524 1.0000 R 0
positions_7nt_m5 oligos_6nt_mkv4_m2 positions_7nt_m5 oligos_6nt_mkv4_m2 0.858 0.858 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m2 positions_7nt_m5 oligos_6nt_mkv4_m2 positions_7nt_m5 0.858 0.858 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 0.845 0.845 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 0.845 0.845 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m1 positions_6nt_m4 positions_6nt_m1 0.921 0.837 20 22 20 22 0.9091 1.0000 0.9091 R -2
positions_6nt_m1 positions_6nt_m4 positions_6nt_m1 positions_6nt_m4 0.921 0.837 22 20 20 22 0.9091 0.9091 1.0000 R 0
positions_7nt_m2 positions_7nt_m4 positions_7nt_m2 positions_7nt_m4 0.854 0.793 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_7nt_m4 positions_7nt_m2 positions_7nt_m4 positions_7nt_m2 0.854 0.793 13 14 13 14 0.9286 1.0000 0.9286 R -1
positions_6nt_m2 oligos_6nt_mkv4_m2 positions_6nt_m2 oligos_6nt_mkv4_m2 0.928 0.785 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6nt_mkv4_m2 positions_6nt_m2 oligos_6nt_mkv4_m2 positions_6nt_m2 0.928 0.785 11 13 11 13 0.8462 1.0000 0.8462 D -2
positions_7nt_m3 oligos_6nt_mkv4_m2 positions_7nt_m3 oligos_6nt_mkv4_m2 0.915 0.774 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6nt_mkv4_m2 positions_7nt_m3 oligos_6nt_mkv4_m2 positions_7nt_m3 0.915 0.774 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv4_m2 positions_6nt_m3 oligos_6nt_mkv4_m2 positions_6nt_m3 0.760 0.691 11 10 10 11 0.9091 0.9091 1.0000 D 0
positions_6nt_m3 oligos_6nt_mkv4_m2 positions_6nt_m3 oligos_6nt_mkv4_m2 0.760 0.691 10 11 10 11 0.9091 1.0000 0.9091 D 0
positions_7nt_m5 positions_7nt_m3 positions_7nt_m5 positions_7nt_m3 0.798 0.675 11 13 11 13 0.8462 1.0000 0.8462 D -2
positions_7nt_m3 positions_7nt_m5 positions_7nt_m3 positions_7nt_m5 0.798 0.675 13 11 11 13 0.8462 0.8462 1.0000 D 2
positions_7nt_m5 positions_6nt_m2 positions_7nt_m5 positions_6nt_m2 0.780 0.660 11 13 11 13 0.8462 1.0000 0.8462 D -2
positions_6nt_m2 positions_7nt_m5 positions_6nt_m2 positions_7nt_m5 0.780 0.660 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6nt_mkv4_m5 positions_7nt_m5 oligos_6nt_mkv4_m5 positions_7nt_m5 0.745 0.621 11 11 10 12 0.8333 0.9091 0.9091 D -1
positions_7nt_m5 oligos_6nt_mkv4_m5 positions_7nt_m5 oligos_6nt_mkv4_m5 0.745 0.621 11 11 10 12 0.8333 0.9091 0.9091 D 1
positions_6nt_m5 positions_7nt_m2 positions_6nt_m5 positions_7nt_m2 0.920 0.614 21 14 14 21 0.6667 0.6667 1.0000 D 4
positions_7nt_m2 positions_6nt_m5 positions_7nt_m2 positions_6nt_m5 0.920 0.614 14 21 14 21 0.6667 1.0000 0.6667 D -4
oligos_7nt_mkv5_m5 positions_7nt_m4 oligos_7nt_mkv5_m5 positions_7nt_m4 0.815 0.582 11 13 10 14 0.7143 0.9091 0.7692 R 1
positions_7nt_m4 oligos_7nt_mkv5_m5 positions_7nt_m4 oligos_7nt_mkv5_m5 0.815 0.582 13 11 10 14 0.7143 0.7692 0.9091 R 3
positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 0.756 0.582 10 13 10 13 0.7692 1.0000 0.7692 D -2
positions_6nt_m2 positions_6nt_m3 positions_6nt_m2 positions_6nt_m3 0.756 0.582 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_6nt_m4 positions_7nt_m2 positions_6nt_m4 positions_7nt_m2 0.825 0.577 20 14 14 20 0.7000 0.7000 1.0000 D 2
positions_7nt_m2 positions_6nt_m4 positions_7nt_m2 positions_6nt_m4 0.825 0.577 14 20 14 20 0.7000 1.0000 0.7000 D -2
positions_6nt_m1 positions_7nt_m2 positions_6nt_m1 positions_7nt_m2 0.905 0.576 22 14 14 22 0.6364 0.6364 1.0000 D 4
positions_7nt_m2 positions_6nt_m1 positions_7nt_m2 positions_6nt_m1 0.905 0.576 14 22 14 22 0.6364 1.0000 0.6364 D -4
positions_7nt_m3 positions_6nt_m3 positions_7nt_m3 positions_6nt_m3 0.728 0.560 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_6nt_m3 positions_7nt_m3 positions_6nt_m3 positions_7nt_m3 0.728 0.560 10 13 10 13 0.7692 1.0000 0.7692 D -2
positions_7nt_m2 oligos_7nt_mkv5_m5 positions_7nt_m2 oligos_7nt_mkv5_m5 0.816 0.544 14 11 10 15 0.6667 0.7143 0.9091 D -1
oligos_7nt_mkv5_m5 positions_7nt_m2 oligos_7nt_mkv5_m5 positions_7nt_m2 0.816 0.544 11 14 10 15 0.6667 0.9091 0.7143 D 1
positions_6nt_m4 positions_7nt_m4 positions_6nt_m4 positions_7nt_m4 0.779 0.506 20 13 13 20 0.6500 0.6500 1.0000 D 3
positions_7nt_m4 positions_6nt_m4 positions_7nt_m4 positions_6nt_m4 0.779 0.506 13 20 13 20 0.6500 1.0000 0.6500 D -3
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m1 0.844 0.506 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m3 0.844 0.506 12 12 9 15 0.6000 0.7500 0.7500 D 3
positions_7nt_m4 positions_6nt_m5 positions_7nt_m4 positions_6nt_m5 0.793 0.491 13 21 13 21 0.6190 1.0000 0.6190 D -5
positions_6nt_m5 positions_7nt_m4 positions_6nt_m5 positions_7nt_m4 0.793 0.491 21 13 13 21 0.6190 0.6190 1.0000 D 5
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m1 0.800 0.480 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m4 0.800 0.480 12 12 9 15 0.6000 0.7500 0.7500 D 3
positions_6nt_m1 positions_7nt_m4 positions_6nt_m1 positions_7nt_m4 0.783 0.463 22 13 13 22 0.5909 0.5909 1.0000 R 4
positions_7nt_m4 positions_6nt_m1 positions_7nt_m4 positions_6nt_m1 0.783 0.463 13 22 13 22 0.5909 1.0000 0.5909 R -5
positions_6nt_m4 positions_7nt_m1 positions_6nt_m4 positions_7nt_m1 0.772 0.424 20 11 11 20 0.5500 0.5500 1.0000 D 8
positions_7nt_m1 positions_6nt_m4 positions_7nt_m1 positions_6nt_m4 0.772 0.424 11 20 11 20 0.5500 1.0000 0.5500 D -8
positions_6nt_m4 oligos_7nt_mkv5_m5 positions_6nt_m4 oligos_7nt_mkv5_m5 0.743 0.409 20 11 11 20 0.5500 0.5500 1.0000 R 7
oligos_7nt_mkv5_m5 positions_6nt_m4 oligos_7nt_mkv5_m5 positions_6nt_m4 0.743 0.409 11 20 11 20 0.5500 1.0000 0.5500 R -2
positions_6nt_m5 positions_7nt_m1 positions_6nt_m5 positions_7nt_m1 0.768 0.402 21 11 11 21 0.5238 0.5238 1.0000 R 1
positions_7nt_m1 positions_6nt_m5 positions_7nt_m1 positions_6nt_m5 0.768 0.402 11 21 11 21 0.5238 1.0000 0.5238 R -9 
 Host name	rsat
 Job started	2026-01-05.143941
 Job done	2026-01-05.144013
 Seconds	4.41
	user	4.41
	system	1.62
	cuser	22.92
;	csystem	2.7